Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Forward (+)

52403813 .. 52404394

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG336000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCAGATTCATTGTTTCACCCTCACTTTCTTCGCGAGCAAATCAAACCCAGATCAAATTTACAGTCCTTGTTACTAATGGATCATCACCCCCTTCACAACACCCACGTAAAGCTCTTAGCTTTCGACTTGCTCACTCTCACCCAAACCTCCTCCTCCTCCTCCGACCCAACCTCCTTCTCCCGCAACGGCCTCCTCCTCTCACGCGCCGAGGCCGTCGGCACCGTCACCTCACGCGACCTCAAACCCAACAAGTTCCTCCGCTTCACCATCGACGACGGCACCGGCTGCGTCAGCTGCATTCTCTGGCTCAACCACCTCACCTCCCCTTACTTCTCCCGACGAAGCCCACCAGATGTTCGACTCATTGCCTCAATGGCCGCCCGTTTCGCAGCCGACGTCAGCCTCGGAGCGGTTGCCAGAGTGCGCGGGAAAGTCTCGAGCTTCAGGGGTGAAATGCAGATCACTGTGACCGATGTTGTGATGGAGAGGGACCCGAATGCGGAGATGTTGCATTGGATTGAGTGCATGAGGTTGGCGCGGAAGGTTTACAATGTGGTTGCTGCTGCTCCCTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

193

Amino Acids

21.59

Weight (kDa)

9.46

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	73 - 160	1.2e-08	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	402
AccB1I	GGYRCC	2 cut(s)	221, 281
AccBSI	CCGCTC	1 cut(s)	413
AccII	CGCG	5 cut(s)	36, 207, 237, 429, 541
AciI	CCGC	7 cut(s)	184, 262, 381, 413, 429, 503, 541
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	412, 502
AluBI	AGCT	4 cut(s)	115, 122, 297, 444
AluI	AGCT	4 cut(s)	115, 122, 297, 444
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	90
Ama87I	CYCGRG	1 cut(s)	439
AoxI	GGCC	3 cut(s)	190, 213, 378
ApeKI	GCWGC	5 cut(s)	288, 297, 392, 563, 566
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	3 cut(s)	209, 429, 541
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	7 cut(s)	11, 80, 133, 220, 259, 313, 464
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	493
BanI	GGYRCC	2 cut(s)	221, 281
BbvI	GCAGC	5 cut(s)	275, 284, 404, 550, 553
BccI	CCATC	2 cut(s)	278, 478
BceAI	ACGGC	3 cut(s)	200, 205, 295
BcoDI	GTCTC	1 cut(s)	442
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	6 cut(s)	289, 298, 381, 393, 564, 567
BlsI	GCNGC	6 cut(s)	290, 299, 382, 394, 565, 568
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	4 cut(s)	223, 283, 494, 495
BsaAI	YACGTR	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	210, 406
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 502
Bse118I	RCCGGY	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	210, 406
BseLI	CCNNNNNNNGG	2 cut(s)	412, 502
BseMI	GCAATG	1 cut(s)	366
BseRI	GAGGAG	6 cut(s)	142, 145, 148, 151, 185, 188
BseXI	GCAGC	5 cut(s)	275, 284, 404, 550, 553
Bsh1236I	CGCG	5 cut(s)	36, 207, 237, 429, 541
BshFI	GGCC	3 cut(s)	192, 215, 380
BshNI	GGYRCC	2 cut(s)	221, 281
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	412, 502
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	2 cut(s)	300, 505
BsnI	GGCC	3 cut(s)	192, 215, 380
BsoBI	CYCGRG	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	53, 82, 462
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	7 cut(s)	184, 262, 381, 413, 429, 503, 541
BspANI	GGCC	3 cut(s)	192, 215, 380
BspFNI	CGCG	5 cut(s)	36, 207, 237, 429, 541
BspLI	GGNNCC	4 cut(s)	223, 283, 494, 495
BspPI	GGATC	1 cut(s)	90
BspT107I	GGYRCC	2 cut(s)	221, 281
BsrBI	CCGCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	210, 406
BssMI	GATC	3 cut(s)	53, 82, 462
BssNI	GRCGYC	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	66, 226, 469
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	118
BstFNI	CGCG	5 cut(s)	36, 207, 237, 429, 541
BstHHI	GCGC	3 cut(s)	209, 429, 541
BstKTI	GATC	3 cut(s)	56, 85, 465
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	3 cut(s)	53, 82, 462
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 294, 297, 377, 389
BstUI	CGCG	5 cut(s)	36, 207, 237, 429, 541
BstV1I	GCAGC	5 cut(s)	275, 284, 404, 550, 553
BsuRI	GGCC	3 cut(s)	192, 215, 380
BtsIMutI	CAGTG	1 cut(s)	465
BtuMI	TCGCGA	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	3 cut(s)	209, 429, 541
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	1 cut(s)	280
CviAII	CATG	1 cut(s)	529
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	3 cut(s)	55, 84, 464
DpnII	GATC	3 cut(s)	53, 82, 462
EaeI	YGGCCR	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	493
FaeI	CATG	1 cut(s)	532
FaiI	YATR	1 cut(s)	530
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	1 cut(s)	528
FauI	CCCGC	2 cut(s)	191, 422
Fnu4HI	GCNGC	6 cut(s)	289, 298, 381, 393, 564, 567
Fsp4HI	GCNGC	6 cut(s)	289, 298, 381, 393, 564, 567
GlaI	GCGC	3 cut(s)	208, 428, 540
GluI	GCNGC	6 cut(s)	289, 298, 381, 393, 564, 567
HaeIII	GGCC	3 cut(s)	192, 215, 380
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	3 cut(s)	209, 429, 541
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	532
Hin6I	GCGC	3 cut(s)	207, 427, 539
HinP1I	GCGC	3 cut(s)	207, 427, 539
HinfI	GANTC	2 cut(s)	8, 363
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	7 cut(s)	11, 80, 133, 220, 259, 313, 464
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	166, 410
Hpy188III	TCNNGA	3 cut(s)	35, 339, 439
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	5 cut(s)	221, 278, 281, 345, 401
HpyAV	CCTTC	3 cut(s)	104, 187, 538
HpyCH4III	ACNGT	3 cut(s)	66, 226, 469
HpyCH4IV	ACGT	2 cut(s)	108, 399
HpyCH4V	TGCA	5 cut(s)	300, 460, 514, 528, 576
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 294, 297, 377, 389
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	108, 399
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	532
HspAI	GCGC	3 cut(s)	207, 427, 539
KflI	GGGWCCC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	53, 82, 462
LmnI	GCTCC	2 cut(s)	410, 574
LpnPI	CCDG	7 cut(s)	18, 64, 292, 298, 366, 433, 433
Lsp1109I	GCAGC	5 cut(s)	275, 284, 404, 550, 553
MaeII	ACGT	2 cut(s)	108, 399
MaeIII	GTNAC	3 cut(s)	72, 226, 469
MalI	GATC	3 cut(s)	55, 84, 464
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	53, 82, 462
MboII	GAAGA	1 cut(s)	23
MluCI	AATT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	1 cut(s)	285
Mva1269I	GAATGC	2 cut(s)	300, 505
MvnI	CGCG	5 cut(s)	36, 207, 237, 429, 541
MwoI	GCNNNNNNNGC	5 cut(s)	288, 294, 297, 377, 389
NdeII	GATC	3 cut(s)	53, 82, 462
NlaIII	CATG	1 cut(s)	532
NlaIV	GGNNCC	4 cut(s)	223, 283, 494, 495
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	226, 469
NruI	TCGCGA	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	2 cut(s)	300, 505
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	290, 299, 382, 394, 565, 568
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Ppu21I	YACGTR	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	493
PspN4I	GGNNCC	4 cut(s)	223, 283, 494, 495
PspPI	GGNCC	1 cut(s)	493
PspPPI	RGGWCCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	297
RruI	TCGCGA	1 cut(s)	36
SatI	GCNGC	6 cut(s)	289, 298, 381, 393, 564, 567
Sau3AI	GATC	3 cut(s)	53, 82, 462
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	493
SlaI	CTCGAG	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	7 cut(s)	184, 262, 381, 413, 429, 503, 541
TaaI	ACNGT	3 cut(s)	66, 226, 469
TaiI	ACGT	2 cut(s)	111, 402
TaqI	TCGA	4 cut(s)	126, 273, 361, 440
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	1 cut(s)	58
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	2 cut(s)	226, 469
TseI	GCWGC	5 cut(s)	288, 297, 392, 563, 566
Tsp45I	GTSAC	2 cut(s)	226, 469
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	439
ZraI	GACGTC	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.