Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Forward (+)

51838911 .. 51839500

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATCCTCACCCCCTTCACAACACCCACGTAAAGCTCTTAGCTTTCGACTTGCTCACTCTCACCCAAACCTCCCCCTCCTCCTCCGACCCAACCTCCTTCTCCCGCAACGGCCTCCTCCTCTCACGCGCCGAGGCCGTCGGCACCGTCACCTCACGTGACCTCAAACCCAACAAGTTCCTCCGCTTCACCATCGACGACGGCACCGGCTGCGTCAGCTGCATTCTCTGGCTCAACCACCTCACCTCCGCTTACTTCTCCCGACGAAGCCCACCAGATGTTCGACTCATTGCCTCAATGGCCGCCCGTTTCGCCGCCGACGTCAGCCTCGGAGCGGTGGCCAGAGTGCGCGGGAAAGTCTCGAGCTTCAGGGGTGAAATGCAGATCACTGTGACCGATGTTGTGATCGAGAGGGACCCGAATGCGGAGATGTTGCATTGGATTGAGAGCATGAGGTTGGCGCGGAAGGTTTACAATGTGGTTGCTACTGCTCCCTCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

167

Amino Acids

18.41

Weight (kDa)

9.62

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	47 - 135	5.1e-09	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccB1I	GGYRCC	2 cut(s)	143, 203
AccBSI	CCGCTC	1 cut(s)	335
AccII	CGCG	3 cut(s)	129, 351, 463
AciI	CCGC	9 cut(s)	106, 184, 249, 303, 315, 335, 351, 425, 463
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	300, 339
AcuI	CTGAAG	1 cut(s)	352
AcvI	CACGTG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	334, 424
AluBI	AGCT	4 cut(s)	37, 44, 219, 366
AluI	AGCT	4 cut(s)	37, 44, 219, 366
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	4 cut(s)	112, 135, 300, 339
ApeKI	GCWGC	2 cut(s)	210, 219
AspLEI	GCGC	3 cut(s)	131, 351, 463
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	5 cut(s)	55, 142, 181, 235, 386
AvaI	CYCGRG	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	143, 203
BbrPI	CACGTG	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	197, 206
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	3 cut(s)	122, 127, 217
BcoDI	GTCTC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	4 cut(s)	211, 220, 303, 315
BlsI	GCNGC	4 cut(s)	212, 221, 304, 316
Bme18I	GGWCC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	5 cut(s)	6, 145, 205, 416, 417
BsaAI	YACGTR	2 cut(s)	31, 158
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	132, 328
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 424
Bse118I	RCCGGY	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	132, 328
BseLI	CCNNNNNNNGG	2 cut(s)	334, 424
BseMI	GCAATG	1 cut(s)	288
BseRI	GAGGAG	4 cut(s)	70, 73, 107, 110
BseXI	GCAGC	2 cut(s)	197, 206
Bsh1236I	CGCG	3 cut(s)	129, 351, 463
BshFI	GGCC	4 cut(s)	114, 137, 302, 341
BshNI	GGYRCC	2 cut(s)	143, 203
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	334, 424
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	2 cut(s)	222, 427
BsnI	GGCC	4 cut(s)	114, 137, 302, 341
BsoBI	CYCGRG	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	4, 384, 405
BspACI	CCGC	9 cut(s)	106, 184, 249, 303, 315, 335, 351, 425, 463
BspANI	GGCC	4 cut(s)	114, 137, 302, 341
BspFNI	CGCG	3 cut(s)	129, 351, 463
BspLI	GGNNCC	5 cut(s)	6, 145, 205, 416, 417
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	143, 203
BsrBI	CCGCTC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	132, 328
BssMI	GATC	3 cut(s)	4, 384, 405
BssNI	GRCGYC	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	148, 391
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstBAI	YACGTR	2 cut(s)	31, 158
BstDEI	CTNAG	1 cut(s)	40
BstFNI	CGCG	3 cut(s)	129, 351, 463
BstHHI	GCGC	3 cut(s)	131, 351, 463
BstKTI	GATC	3 cut(s)	7, 387, 408
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	4, 384, 405
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 216, 219, 299, 311
BstUI	CGCG	3 cut(s)	129, 351, 463
BstV1I	GCAGC	2 cut(s)	197, 206
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	4 cut(s)	114, 137, 302, 341
BtsIMutI	CAGTG	1 cut(s)	387
CfoI	GCGC	3 cut(s)	131, 351, 463
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	202
CviAII	CATG	1 cut(s)	451
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	6, 386, 407
DpnII	GATC	3 cut(s)	4, 384, 405
EaeI	YGGCCR	2 cut(s)	300, 339
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	352
Eco72I	CACGTG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	415
FaeI	CATG	1 cut(s)	454
FaiI	YATR	1 cut(s)	452
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	450
FauI	CCCGC	2 cut(s)	113, 344
Fnu4HI	GCNGC	4 cut(s)	211, 220, 303, 315
Fsp4HI	GCNGC	4 cut(s)	211, 220, 303, 315
GlaI	GCGC	3 cut(s)	130, 350, 462
GluI	GCNGC	4 cut(s)	211, 220, 303, 315
HaeIII	GGCC	4 cut(s)	114, 137, 302, 341
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	3 cut(s)	131, 351, 463
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	454
Hin6I	GCGC	3 cut(s)	129, 349, 461
HinP1I	GCGC	3 cut(s)	129, 349, 461
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	5 cut(s)	55, 142, 181, 235, 386
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	88, 332
Hpy188III	TCNNGA	3 cut(s)	261, 361, 409
Hpy8I	GTNNAC	1 cut(s)	472
Hpy99I	CGWCG	5 cut(s)	143, 200, 203, 267, 323
HpyAV	CCTTC	3 cut(s)	26, 109, 460
HpyCH4III	ACNGT	2 cut(s)	148, 391
HpyCH4IV	ACGT	3 cut(s)	30, 157, 321
HpyCH4V	TGCA	3 cut(s)	222, 382, 436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 216, 219, 299, 311
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	3 cut(s)	30, 157, 321
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	454
HspAI	GCGC	3 cut(s)	129, 349, 461
KflI	GGGWCCC	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	4, 384, 405
LmnI	GCTCC	2 cut(s)	332, 496
LpnPI	CCDG	5 cut(s)	214, 220, 288, 355, 355
Lsp1109I	GCAGC	2 cut(s)	197, 206
MaeII	ACGT	3 cut(s)	30, 157, 321
MaeIII	GTNAC	3 cut(s)	148, 158, 391
MalI	GATC	3 cut(s)	6, 386, 407
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	3 cut(s)	4, 384, 405
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	111
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	207
Mva1269I	GAATGC	2 cut(s)	222, 427
MvnI	CGCG	3 cut(s)	129, 351, 463
MwoI	GCNNNNNNNGC	5 cut(s)	210, 216, 219, 299, 311
NdeII	GATC	3 cut(s)	4, 384, 405
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	5 cut(s)	6, 145, 205, 416, 417
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	148, 158, 391
PaeR7I	CTCGAG	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PctI	GAATGC	2 cut(s)	222, 427
PkrI	GCNGC	4 cut(s)	212, 221, 304, 316
PleI	GAGTC	1 cut(s)	279
PmaCI	CACGTG	1 cut(s)	158
PmlI	CACGTG	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	279
Ppu21I	YACGTR	2 cut(s)	31, 158
PpuMI	RGGWCCY	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	415
PspCI	CACGTG	1 cut(s)	158
PspN4I	GGNNCC	5 cut(s)	6, 145, 205, 416, 417
PspPI	GGNCC	1 cut(s)	415
PspPPI	RGGWCCY	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	219
SatI	GCNGC	4 cut(s)	211, 220, 303, 315
Sau3AI	GATC	3 cut(s)	4, 384, 405
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	415
SlaI	CTCGAG	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
SsiI	CCGC	9 cut(s)	106, 184, 249, 303, 315, 335, 351, 425, 463
TaaI	ACNGT	2 cut(s)	148, 391
TaiI	ACGT	3 cut(s)	33, 160, 324
TaqI	TCGA	5 cut(s)	48, 195, 283, 362, 408
TaqII	GACCGA	1 cut(s)	410
TauI	GCSGC	2 cut(s)	305, 317
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	3 cut(s)	148, 158, 391
TseI	GCWGC	2 cut(s)	210, 219
Tsp45I	GTSAC	3 cut(s)	148, 158, 391
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	415
XhoI	CTCGAG	1 cut(s)	361
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.