Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Reverse (-)

16658006 .. 16659220

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGATCATCACCCCCTTCACAACACCCACGTAAAGCTCTTAGCTTTTGACTTGCTCACTCTCACCCAAACCTCCTCCTCCAACCCAACCTCCTTCTCCCGCAACGGCCTCCTACTCTCACGCGCCGAGGCCGTCGGCACCGTCACCTCACGCGACCTCATACCCAACAAGTTCCTCCGCTTCACCATCGACGACGGCACCGGCTGCGTCAGCTGCATTCTCTGGCTCAACCACCTCACCTCCCCTTACTTCTCCCGACGAAGCCCACCAGATGTTCGACTCATTGCCTCAATGGCCTCCCGTTTCGCCGCCGACGTGAGCCTCGGAGCTGTGGCCAGAGTGCGCGGGAAAATCTCGAGCTTCAGGGGTGAAATGCAGATCACTGTGACCGATGTTGTGATCGAGAGGGACCCGAATGCGGAGATGTTGCATTGGATTGAGTGCATGAGGTTGGCGCGGAAGGTTTACAACGTGGTTGCTACTGCTCCCTGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

165

Amino Acids

18.34

Weight (kDa)

9.33

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	45 - 133	5.8e-08	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	137, 197
AccII	CGCG	4 cut(s)	123, 153, 345, 457
AciI	CCGC	6 cut(s)	100, 178, 309, 345, 419, 457
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	418
AjiI	CACGTC	1 cut(s)	316
AluBI	AGCT	5 cut(s)	37, 44, 213, 329, 360
AluI	AGCT	5 cut(s)	37, 44, 213, 329, 360
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	4 cut(s)	106, 129, 294, 333
ApeKI	GCWGC	2 cut(s)	204, 213
AspLEI	GCGC	3 cut(s)	125, 345, 457
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	5 cut(s)	55, 136, 175, 229, 380
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	2 cut(s)	137, 197
BbvI	GCAGC	2 cut(s)	191, 200
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	3 cut(s)	116, 121, 211
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	3 cut(s)	205, 214, 309
BlsI	GCNGC	3 cut(s)	206, 215, 310
Bme18I	GGWCC	1 cut(s)	409
BmeT110I	CYCGRG	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	4 cut(s)	139, 199, 410, 411
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	126, 322
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	126, 322
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	282
BseRI	GAGGAG	2 cut(s)	64, 67
BseXI	GCAGC	2 cut(s)	191, 200
Bsh1236I	CGCG	4 cut(s)	123, 153, 345, 457
BshFI	GGCC	4 cut(s)	108, 131, 296, 335
BshNI	GGYRCC	2 cut(s)	137, 197
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	2 cut(s)	216, 421
BsnI	GGCC	4 cut(s)	108, 131, 296, 335
BsoBI	CYCGRG	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	4, 378, 399
BspACI	CCGC	6 cut(s)	100, 178, 309, 345, 419, 457
BspANI	GGCC	4 cut(s)	108, 131, 296, 335
BspFNI	CGCG	4 cut(s)	123, 153, 345, 457
BspLI	GGNNCC	4 cut(s)	139, 199, 410, 411
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	137, 197
BsrDI	GCAATG	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	126, 322
BssMI	GATC	3 cut(s)	4, 378, 399
Bst4CI	ACNGT	2 cut(s)	142, 385
BstAPI	GCANNNNNTGC	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	40
BstFNI	CGCG	4 cut(s)	123, 153, 345, 457
BstHHI	GCGC	3 cut(s)	125, 345, 457
BstKTI	GATC	3 cut(s)	7, 381, 402
BstMBI	GATC	3 cut(s)	4, 378, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 210, 213, 293
BstUI	CGCG	4 cut(s)	123, 153, 345, 457
BstV1I	GCAGC	2 cut(s)	191, 200
BsuRI	GGCC	4 cut(s)	108, 131, 296, 335
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	381
CfoI	GCGC	3 cut(s)	125, 345, 457
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	196
CviAII	CATG	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	6, 380, 401
DpnII	GATC	3 cut(s)	4, 378, 399
EaeI	YGGCCR	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	409
FaeI	CATG	1 cut(s)	448
FaiI	YATR	2 cut(s)	161, 446
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	1 cut(s)	444
FauI	CCCGC	2 cut(s)	107, 338
Fnu4HI	GCNGC	3 cut(s)	205, 214, 309
Fsp4HI	GCNGC	3 cut(s)	205, 214, 309
GlaI	GCGC	3 cut(s)	124, 344, 456
GluI	GCNGC	3 cut(s)	205, 214, 309
HaeIII	GGCC	4 cut(s)	108, 131, 296, 335
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	3 cut(s)	125, 345, 457
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	3 cut(s)	123, 343, 455
HinP1I	GCGC	3 cut(s)	123, 343, 455
HinfI	GANTC	1 cut(s)	279
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	5 cut(s)	55, 136, 175, 229, 380
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	3 cut(s)	255, 355, 403
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	5 cut(s)	137, 194, 197, 261, 317
HpyAV	CCTTC	3 cut(s)	26, 103, 454
HpyCH4III	ACNGT	2 cut(s)	142, 385
HpyCH4IV	ACGT	3 cut(s)	30, 315, 471
HpyCH4V	TGCA	5 cut(s)	216, 376, 430, 444, 492
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 210, 213, 293
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	3 cut(s)	30, 315, 471
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	3 cut(s)	123, 343, 455
KflI	GGGWCCC	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	4, 378, 399
LmnI	GCTCC	2 cut(s)	326, 490
LpnPI	CCDG	5 cut(s)	208, 214, 282, 349, 349
Lsp1109I	GCAGC	2 cut(s)	191, 200
MaeII	ACGT	3 cut(s)	30, 315, 471
MaeIII	GTNAC	2 cut(s)	142, 385
MalI	GATC	3 cut(s)	6, 380, 401
MboI	GATC	3 cut(s)	4, 378, 399
MlsI	TGGCCA	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	105
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	1 cut(s)	201
Mva1269I	GAATGC	2 cut(s)	216, 421
MvnI	CGCG	4 cut(s)	123, 153, 345, 457
MwoI	GCNNNNNNNGC	4 cut(s)	204, 210, 213, 293
NdeII	GATC	3 cut(s)	4, 378, 399
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	4 cut(s)	139, 199, 410, 411
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	142, 385
PaeR7I	CTCGAG	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PctI	GAATGC	2 cut(s)	216, 421
PkrI	GCNGC	3 cut(s)	206, 215, 310
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Ppu21I	YACGTR	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	139, 199, 410, 411
PspPI	GGNCC	1 cut(s)	409
PspPPI	RGGWCCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	213
SatI	GCNGC	3 cut(s)	205, 214, 309
Sau3AI	GATC	3 cut(s)	4, 378, 399
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	409
SlaI	CTCGAG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SsiI	CCGC	6 cut(s)	100, 178, 309, 345, 419, 457
TaaI	ACNGT	2 cut(s)	142, 385
TaiI	ACGT	3 cut(s)	33, 318, 474
TaqI	TCGA	4 cut(s)	189, 277, 356, 402
TaqII	GACCGA	1 cut(s)	404
TauI	GCSGC	1 cut(s)	311
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	142, 385
TseI	GCWGC	2 cut(s)	204, 213
Tsp45I	GTSAC	2 cut(s)	142, 385
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.