Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Reverse (-)

4566637 .. 4567026

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1065600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGCATCCGCTATACAACACCCACGTAAAACTCTTGGCCTTCGACCTCAACTCTCTCACCCAAACCTCATTTTCATCGGGTTCAATCTCCTTCTCCTGCAACGGCGCTCTCCTATCACGCGCAGAGGCCGTCGGCACTGTCACGTCTCGCGACCTCAAACCCAACAAGTTCCTCAGGTTCACCATAGACGACGGCACCGGCTGCATCAGCTGCATTCTCTGGCTCAACCAGCACTCCTCCCCCTACTTCTCCCGCCGCAGCCCGCCAGATGTTCGACTTATTGCCCAAACCGCATTGCGCTTCGCTGCGGAGATTAAGCTCGGCGTGGTGGCCAGAGTGCGGAGGAAGATCCCTAGCTACATGGGCGTTACGCAGAAGATGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

130

Amino Acids

14.31

Weight (kDa)

9.95

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	2 cut(s)	123, 153
AciI	CCGC	7 cut(s)	11, 256, 259, 266, 294, 311, 343
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	1 cut(s)	87
AjiI	CACGTC	1 cut(s)	147
AluBI	AGCT	3 cut(s)	213, 322, 360
AluI	AGCT	3 cut(s)	213, 322, 360
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	3 cut(s)	39, 129, 333
ApeKI	GCWGC	4 cut(s)	204, 213, 261, 308
AspLEI	GCGC	3 cut(s)	110, 125, 303
AsuHPI	GGTGA	2 cut(s)	52, 175
AxyI	CCTNAGG	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	191, 200, 273, 295
BceAI	ACGGC	3 cut(s)	116, 121, 211
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	5 cut(s)	205, 214, 259, 262, 309
BlsI	GCNGC	5 cut(s)	206, 215, 260, 263, 310
BmgBI	CACGTC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	2 cut(s)	16, 216
BsaAI	YACGTR	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	7
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	4 cut(s)	191, 200, 273, 295
Bsh1236I	CGCG	2 cut(s)	123, 153
BshFI	GGCC	3 cut(s)	41, 131, 335
BshNI	GGYRCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	41, 131, 335
Bsp143I	GATC	1 cut(s)	351
Bsp68I	TCGCGA	1 cut(s)	153
BspACI	CCGC	7 cut(s)	11, 256, 259, 266, 294, 311, 343
BspANI	GGCC	3 cut(s)	41, 131, 335
BspCNI	CTCAG	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	123, 153
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	346
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssMI	GATC	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	142
BstAPI	GCANNNNNTGC	2 cut(s)	204, 213
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	7
BstFNI	CGCG	2 cut(s)	123, 153
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	3 cut(s)	110, 125, 303
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	6 cut(s)	204, 210, 213, 232, 293, 366
BstUI	CGCG	2 cut(s)	123, 153
BstV1I	GCAGC	4 cut(s)	191, 200, 273, 295
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
Bsu36I	CCTNAGG	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	41, 131, 335
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	138
BtuMI	TCGCGA	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	3 cut(s)	110, 125, 303
Cfr10I	RCCGGY	1 cut(s)	200
CviAII	CATG	1 cut(s)	364
CviJI	RGCY	9 cut(s)	41, 131, 204, 213, 226, 264, 322, 335, 360
CviKI_1	RGCY	9 cut(s)	41, 131, 204, 213, 226, 264, 322, 335, 360
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	333
Eco81I	CCTNAGG	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	367
FaiI	YATR	3 cut(s)	16, 188, 365
FatI	CATG	1 cut(s)	363
FauI	CCCGC	2 cut(s)	263, 273
Fnu4HI	GCNGC	5 cut(s)	205, 214, 259, 262, 309
Fsp4HI	GCNGC	5 cut(s)	205, 214, 259, 262, 309
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	3 cut(s)	109, 124, 302
GluI	GCNGC	5 cut(s)	205, 214, 259, 262, 309
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	41, 131, 335
HapII	CCGG	1 cut(s)	201
HhaI	GCGC	3 cut(s)	110, 125, 303
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	3 cut(s)	108, 123, 301
HinP1I	GCGC	3 cut(s)	108, 123, 301
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	52, 175
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	152, 387
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	2 cut(s)	137, 197
HpyAV	CCTTC	2 cut(s)	52, 103
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	27, 146
HpyCH4V	TGCA	3 cut(s)	102, 207, 216
HpyF10VI	GCNNNNNNNGC	6 cut(s)	204, 210, 213, 232, 293, 366
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	2 cut(s)	27, 146
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	3 cut(s)	108, 123, 301
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	112, 163, 208, 214, 245, 282, 349
Lsp1109I	GCAGC	4 cut(s)	191, 200, 273, 295
LweI	GCATC	2 cut(s)	16, 216
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	2 cut(s)	27, 146
MaeIII	GTNAC	2 cut(s)	142, 370
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	1 cut(s)	361
MflI	RGATCY	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	335
MnlI	CCTC	7 cut(s)	59, 79, 121, 167, 185, 250, 339
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	216
MvnI	CGCG	2 cut(s)	123, 153
MwoI	GCNNNNNNNGC	6 cut(s)	204, 210, 213, 232, 293, 366
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	1 cut(s)	199
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	142
NruI	TCGCGA	1 cut(s)	153
PctI	GAATGC	1 cut(s)	216
PkrI	GCNGC	5 cut(s)	206, 215, 260, 263, 310
Ppu21I	YACGTR	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	213
RruI	TCGCGA	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	5 cut(s)	205, 214, 259, 262, 309
Sau3AI	GATC	1 cut(s)	351
SetI	ASST	9 cut(s)	30, 51, 71, 149, 159, 182, 215, 324, 362
SfaNI	GCATC	2 cut(s)	16, 216
SsiI	CCGC	7 cut(s)	11, 256, 259, 266, 294, 311, 343
SspMI	CTAG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	30, 149
TaqI	TCGA	2 cut(s)	45, 277
TauI	GCSGC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	4 cut(s)	204, 213, 261, 308
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	145
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.