Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Forward (+)

34730906 .. 34731403

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1260600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGCATTCACTATACAACACCCACGTAAAACTCTTGGCCTTCGACCTCAACTCTCTCACCCAAACCTCCTCCTCCTCCTCGGACCCAATCTCCTTCTCCCGCAACGGCGCTCTCCTCTCCCGCGCTGAGACCGTCGGCACCGTCACGTCTCGCGACCTCAAACCCAACAAGTTCCTCAGGTTCACCATCGACGACGGCACCGGCTGCGTCAGCTGCATTCTCTGGCTCAACCAGCTCTCCTCCCCCTACTTCTCCCGCCGCAGCCCGCCAGATGTTCGACTTATTGCCCAACACGCACTGCGCTTCGCCGCGGAGATTAAGCTCGGCGTGGTGGCCAGAGTGCGCGGGAAGATCACCAGCTACAGGGGCGTTACGCAGATCACGGTGTCGGACGTCGTGATCGAGAGAGACCCCAACGTGGAGATGTTGCACTGGTTGGACTGCATCAGGTTGGCGCGAAAAGTTTACAACATCATCCCTCATTCAAATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

166

Amino Acids

18.53

Weight (kDa)

9.66

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	46 - 134	7.1e-08	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	399
AccB1I	GGYRCC	2 cut(s)	140, 200
AccII	CGCG	5 cut(s)	126, 156, 314, 348, 460
AciI	CCGC	8 cut(s)	103, 124, 259, 262, 269, 312, 314, 348
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	366, 421
AgsI	TTSAA	1 cut(s)	489
AjiI	CACGTC	1 cut(s)	150
AluBI	AGCT	4 cut(s)	216, 238, 325, 363
AluI	AGCT	4 cut(s)	216, 238, 325, 363
Alw26I	GTCTC	3 cut(s)	125, 156, 405
AoxI	GGCC	2 cut(s)	39, 336
ApeKI	GCWGC	3 cut(s)	207, 216, 264
AspLEI	GCGC	5 cut(s)	113, 128, 306, 348, 460
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	3 cut(s)	52, 178, 349
AvaII	GGWCC	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	140, 200
BbvI	GCAGC	3 cut(s)	194, 203, 276
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	2 cut(s)	124, 214
BcoDI	GTCTC	3 cut(s)	125, 156, 405
BfmI	CTRYAG	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
BlsI	GCNGC	5 cut(s)	209, 218, 263, 266, 313
Bme18I	GGWCC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	87, 142, 202
BmsI	GCATC	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	2 cut(s)	125, 405
BsaJI	CCNNGG	2 cut(s)	81, 312
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 421
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	440
Bse21I	CCTNAGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	81, 312
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	366, 421
BseMII	CTCAG	2 cut(s)	120, 193
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	6 cut(s)	61, 64, 67, 70, 107, 232
BseXI	GCAGC	3 cut(s)	194, 203, 276
Bsh1236I	CGCG	5 cut(s)	126, 156, 314, 348, 460
BshFI	GGCC	2 cut(s)	41, 338
BshNI	GGYRCC	2 cut(s)	140, 200
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	366, 421
BsmAI	GTCTC	3 cut(s)	125, 156, 405
BsmBI	CGTCTC	1 cut(s)	156
BsmI	GAATGC	2 cut(s)	7, 219
BsnI	GGCC	2 cut(s)	41, 338
Bso31I	GGTCTC	2 cut(s)	125, 405
Bsp143I	GATC	3 cut(s)	354, 381, 402
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	8 cut(s)	103, 124, 259, 262, 269, 312, 314, 348
BspANI	GGCC	2 cut(s)	41, 338
BspCNI	CTCAG	2 cut(s)	121, 192
BspFNI	CGCG	5 cut(s)	126, 156, 314, 348, 460
BspLI	GGNNCC	3 cut(s)	87, 142, 202
BspT107I	GGYRCC	2 cut(s)	140, 200
BspTNI	GGTCTC	2 cut(s)	125, 405
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	81, 312
BssMI	GATC	3 cut(s)	354, 381, 402
BssNI	GRCGYC	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	136, 145, 388
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	129, 179
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	5 cut(s)	126, 156, 314, 348, 460
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	5 cut(s)	113, 128, 306, 348, 460
BstKTI	GATC	3 cut(s)	357, 384, 405
BstMAI	GTCTC	3 cut(s)	125, 156, 405
BstMBI	GATC	3 cut(s)	354, 381, 402
BstMWI	GCNNNNNNNGC	6 cut(s)	207, 213, 216, 235, 296, 369
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	5 cut(s)	126, 156, 314, 348, 460
BstV1I	GCAGC	3 cut(s)	194, 203, 276
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	41, 338
BtgI	CCRYGG	1 cut(s)	312
BtrI	CACGTC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	477
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	2 cut(s)	299, 433
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	5 cut(s)	113, 128, 306, 348, 460
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	315
CseI	GACGC	1 cut(s)	199
CviJI	RGCY	9 cut(s)	41, 207, 216, 229, 238, 267, 325, 338, 363
CviKI_1	RGCY	9 cut(s)	41, 207, 216, 229, 238, 267, 325, 338, 363
DdeI	CTNAG	2 cut(s)	129, 179
DpnI	GATC	3 cut(s)	356, 383, 404
DpnII	GATC	3 cut(s)	354, 381, 402
EaeI	YGGCCR	1 cut(s)	336
Eco31I	GGTCTC	2 cut(s)	125, 405
Eco47I	GGWCC	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	156
FaiI	YATR	1 cut(s)	16
FauI	CCCGC	5 cut(s)	110, 131, 266, 276, 341
Fnu4HI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
GlaI	GCGC	5 cut(s)	112, 127, 305, 347, 459
GluI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	41, 338
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	5 cut(s)	113, 128, 306, 348, 460
Hin1I	GRCGYC	1 cut(s)	396
Hin6I	GCGC	5 cut(s)	111, 126, 304, 346, 458
HinP1I	GCGC	5 cut(s)	111, 126, 304, 346, 458
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	52, 178, 349
Hpy166II	GTNNAC	2 cut(s)	186, 469
Hpy188I	TCNGA	2 cut(s)	85, 394
Hpy188III	TCNNGA	3 cut(s)	155, 400, 406
Hpy8I	GTNNAC	2 cut(s)	186, 469
Hpy99I	CGWCG	4 cut(s)	140, 197, 200, 401
HpyAV	CCTTC	2 cut(s)	52, 106
HpyCH4III	ACNGT	3 cut(s)	136, 145, 388
HpyCH4IV	ACGT	4 cut(s)	27, 149, 396, 420
HpyCH4V	TGCA	3 cut(s)	219, 433, 447
HpyF10VI	GCNNNNNNNGC	6 cut(s)	207, 213, 216, 235, 296, 369
HpyF3I	CTNAG	2 cut(s)	129, 179
HpySE526I	ACGT	4 cut(s)	27, 149, 396, 420
Hsp92I	GRCGYC	1 cut(s)	396
HspAI	GCGC	5 cut(s)	111, 126, 304, 346, 458
KspI	CCGCGG	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	354, 381, 402
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	194, 203, 276
LweI	GCATC	1 cut(s)	456
MaeII	ACGT	4 cut(s)	27, 149, 396, 420
MaeIII	GTNAC	2 cut(s)	145, 373
MalI	GATC	3 cut(s)	356, 383, 404
MboI	GATC	3 cut(s)	354, 381, 402
MboII	GAAGA	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	372, 420
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	216, 314
MspI	CCGG	1 cut(s)	204
Mva1269I	GAATGC	2 cut(s)	7, 219
MvnI	CGCG	5 cut(s)	126, 156, 314, 348, 460
MwoI	GCNNNNNNNGC	6 cut(s)	207, 213, 216, 235, 296, 369
NdeII	GATC	3 cut(s)	354, 381, 402
NlaIV	GGNNCC	3 cut(s)	87, 142, 202
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	2 cut(s)	7, 219
PkrI	GCNGC	5 cut(s)	209, 218, 263, 266, 313
Ppu21I	YACGTR	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	87, 142, 202
PspPI	GGNCC	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	216
RruI	TCGCGA	1 cut(s)	156
SacII	CCGCGG	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
Sau3AI	GATC	3 cut(s)	354, 381, 402
Sau96I	GGNCC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	1 cut(s)	364
Sfr303I	CCGCGG	1 cut(s)	315
SgrBI	CCGCGG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	85
SsiI	CCGC	8 cut(s)	103, 124, 259, 262, 269, 312, 314, 348
TaaI	ACNGT	3 cut(s)	136, 145, 388
TaiI	ACGT	4 cut(s)	30, 152, 399, 423
TaqI	TCGA	4 cut(s)	45, 192, 280, 405
TauI	GCSGC	2 cut(s)	264, 314
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	306, 440
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	3 cut(s)	207, 216, 264
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	2 cut(s)	306, 440
VpaK11BI	GGWCC	1 cut(s)	85
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.