Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Forward (+)

21239198 .. 21239695

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGCATTCACTACACAACACCCACGTAAAACTCTTGGCCTTCGACCTCAACTCTCTCACCCAAACCTCCTCCTCCTCCTCGGACCCAATCTCCTTCTCCCGCAACGGCGCTCTCCTCTCCCGCGCTGAGACCGTCGGCACCGTCACCTCTCGCGACCTCAAACCCAACAAGTTCCTCAGGTTCACCATCGACGACGGCACCGGCTGCGTCAGCTGCATTCTCTGGCTCAACCAGCTCTCCTCCCTCTACTTCTCCCGCCGCAGCCCGCCAGATGTTCGACTTATTGCCCAAAACGCAATGCGCTTCGCTGCCGATATTAAGCTCGGCGTGGTGGCCAGAGTGCGCGGGAAGATCACCAGCTACAGGGGCGTTACGCAGATCACGGTGTCGGACGTCGTGATCGAGAGAGACCCCAATGTGGAGATGTTGCACTGGTTGGACTGCATCAGGTTGGCGCGAAAAGTTTACAACGTCGTTCCTTGTTCAAATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

166

Amino Acids

18.44

Weight (kDa)

9.58

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	46 - 134	1.8e-08	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	399
AccB1I	GGYRCC	2 cut(s)	140, 200
AccII	CGCG	4 cut(s)	126, 156, 348, 460
AciI	CCGC	6 cut(s)	103, 124, 259, 262, 269, 348
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	366, 421
AgsI	TTSAA	1 cut(s)	489
AluBI	AGCT	4 cut(s)	216, 238, 325, 363
AluI	AGCT	4 cut(s)	216, 238, 325, 363
Alw26I	GTCTC	2 cut(s)	125, 405
AoxI	GGCC	2 cut(s)	39, 336
ApeKI	GCWGC	4 cut(s)	207, 216, 264, 311
AspLEI	GCGC	5 cut(s)	113, 128, 306, 348, 460
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	4 cut(s)	52, 139, 178, 349
AvaII	GGWCC	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	140, 200
BbvI	GCAGC	4 cut(s)	194, 203, 276, 298
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	2 cut(s)	124, 214
BcoDI	GTCTC	2 cut(s)	125, 405
BfmI	CTRYAG	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
BlsI	GCNGC	5 cut(s)	209, 218, 263, 266, 313
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	87, 142, 202
BmsI	GCATC	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	2 cut(s)	125, 405
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 421
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	440
Bse21I	CCTNAGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	366, 421
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	120, 193
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	6 cut(s)	61, 64, 67, 70, 107, 232
BseXI	GCAGC	4 cut(s)	194, 203, 276, 298
Bsh1236I	CGCG	4 cut(s)	126, 156, 348, 460
BshFI	GGCC	2 cut(s)	41, 338
BshNI	GGYRCC	2 cut(s)	140, 200
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	366, 421
BsmAI	GTCTC	2 cut(s)	125, 405
BsmI	GAATGC	2 cut(s)	7, 219
BsnI	GGCC	2 cut(s)	41, 338
Bso31I	GGTCTC	2 cut(s)	125, 405
Bsp143I	GATC	3 cut(s)	354, 381, 402
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	6 cut(s)	103, 124, 259, 262, 269, 348
BspANI	GGCC	2 cut(s)	41, 338
BspCNI	CTCAG	2 cut(s)	121, 192
BspFNI	CGCG	4 cut(s)	126, 156, 348, 460
BspLI	GGNNCC	3 cut(s)	87, 142, 202
BspT107I	GGYRCC	2 cut(s)	140, 200
BspTNI	GGTCTC	2 cut(s)	125, 405
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	3 cut(s)	354, 381, 402
BssNI	GRCGYC	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	136, 145, 388
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	129, 179
BstFNI	CGCG	4 cut(s)	126, 156, 348, 460
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	5 cut(s)	113, 128, 306, 348, 460
BstKTI	GATC	3 cut(s)	357, 384, 405
BstMAI	GTCTC	2 cut(s)	125, 405
BstMBI	GATC	3 cut(s)	354, 381, 402
BstMWI	GCNNNNNNNGC	6 cut(s)	207, 213, 216, 235, 296, 369
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	4 cut(s)	126, 156, 348, 460
BstV1I	GCAGC	4 cut(s)	194, 203, 276, 298
Bsu36I	CCTNAGG	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	41, 338
BtsIMutI	CAGTG	1 cut(s)	433
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	269
CfoI	GCGC	5 cut(s)	113, 128, 306, 348, 460
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	199
CviJI	RGCY	9 cut(s)	41, 207, 216, 229, 238, 267, 325, 338, 363
CviKI_1	RGCY	9 cut(s)	41, 207, 216, 229, 238, 267, 325, 338, 363
DdeI	CTNAG	2 cut(s)	129, 179
DpnI	GATC	3 cut(s)	356, 383, 404
DpnII	GATC	3 cut(s)	354, 381, 402
EaeI	YGGCCR	1 cut(s)	336
Eco31I	GGTCTC	2 cut(s)	125, 405
Eco47I	GGWCC	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	179
FauI	CCCGC	5 cut(s)	110, 131, 266, 276, 341
Fnu4HI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
Fsp4HI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
GlaI	GCGC	5 cut(s)	112, 127, 305, 347, 459
GluI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	41, 338
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	5 cut(s)	113, 128, 306, 348, 460
Hin1I	GRCGYC	1 cut(s)	396
Hin6I	GCGC	5 cut(s)	111, 126, 304, 346, 458
HinP1I	GCGC	5 cut(s)	111, 126, 304, 346, 458
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	4 cut(s)	52, 139, 178, 349
Hpy166II	GTNNAC	2 cut(s)	186, 469
Hpy188I	TCNGA	2 cut(s)	85, 394
Hpy188III	TCNNGA	3 cut(s)	155, 400, 406
Hpy8I	GTNNAC	2 cut(s)	186, 469
Hpy99I	CGWCG	5 cut(s)	140, 197, 200, 401, 479
HpyAV	CCTTC	2 cut(s)	52, 106
HpyCH4III	ACNGT	3 cut(s)	136, 145, 388
HpyCH4IV	ACGT	3 cut(s)	27, 396, 474
HpyCH4V	TGCA	3 cut(s)	219, 433, 447
HpyF10VI	GCNNNNNNNGC	6 cut(s)	207, 213, 216, 235, 296, 369
HpyF3I	CTNAG	2 cut(s)	129, 179
HpySE526I	ACGT	3 cut(s)	27, 396, 474
Hsp92I	GRCGYC	1 cut(s)	396
HspAI	GCGC	5 cut(s)	111, 126, 304, 346, 458
Kzo9I	GATC	3 cut(s)	354, 381, 402
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	4 cut(s)	194, 203, 276, 298
LweI	GCATC	1 cut(s)	456
MaeII	ACGT	3 cut(s)	27, 396, 474
MaeIII	GTNAC	2 cut(s)	145, 373
MalI	GATC	3 cut(s)	356, 383, 404
MboI	GATC	3 cut(s)	354, 381, 402
MboII	GAAGA	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	338
MluNI	TGGCCA	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	372, 420
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	204
Mva1269I	GAATGC	2 cut(s)	7, 219
MvnI	CGCG	4 cut(s)	126, 156, 348, 460
MwoI	GCNNNNNNNGC	6 cut(s)	207, 213, 216, 235, 296, 369
NdeII	GATC	3 cut(s)	354, 381, 402
NlaIV	GGNNCC	3 cut(s)	87, 142, 202
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	145
NruI	TCGCGA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PctI	GAATGC	2 cut(s)	7, 219
PkrI	GCNGC	5 cut(s)	209, 218, 263, 266, 313
Ppu21I	YACGTR	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	87, 142, 202
PspPI	GGNCC	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	216
RruI	TCGCGA	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	5 cut(s)	208, 217, 262, 265, 312
Sau3AI	GATC	3 cut(s)	354, 381, 402
Sau96I	GGNCC	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	85
SsiI	CCGC	6 cut(s)	103, 124, 259, 262, 269, 348
TaaI	ACNGT	3 cut(s)	136, 145, 388
TaiI	ACGT	3 cut(s)	30, 399, 477
TaqI	TCGA	4 cut(s)	45, 192, 280, 405
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	440
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	4 cut(s)	207, 216, 264, 311
Tsp45I	GTSAC	1 cut(s)	145
TspRI	CASTG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	85
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.