Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Forward (+)

18982073 .. 18982785

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23151.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATCATCAAGCCCTTCACAACACCCACGTAAAGCTCTTAGCTTTCGACATCCTCACCCTCACCCAAACCCGAGACCCAACCTCCTTCTCCCGCAACGGCGTCCTCCTCTCACGCGCCGAGGCCGTCGGCACCGTCACCTCACGCGACCTCAAACCCAACAGGTTCCTCCGCTTCACCATCGACGACGGCACCGCCTCCCTCAGCTGCATTCTCTGGCTCAACCAACTCACCTCCCCTTACTTCTCCCGACGAAGCCCACCAGACGTTAGACTCATTGCCTCATCCGCCGCCCGCTTCGCCGCTGACGTCACCCTCGGAGCCGTGGCAAGAGTGCGCGGCAAAATCTCCAGCTTCAGGGGTGAAATGCAGATCACCGTCACCGATGTCGTCATCGAGAGGGACCCCAATGCCGAGATGTTGCATTGGATTGACTGCATGAGGTTGGCTCGAAAGGTCTACAATGTCATCCCTCAAAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

162

Amino Acids

18.04

Weight (kDa)

9.76

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	43 - 131	1.1e-08	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
AccB1I	GGYRCC	2 cut(s)	131, 191
AccI	GTMKAC	1 cut(s)	459
AccII	CGCG	3 cut(s)	117, 147, 339
AciI	CCGC	8 cut(s)	94, 172, 195, 288, 291, 295, 303, 339
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	340
AcyI	GRCGYC	2 cut(s)	102, 309
AfiI	CCNNNNNNNGG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	37, 44, 207, 354
AluI	AGCT	4 cut(s)	37, 44, 207, 354
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	72
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	119, 339
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	9 cut(s)	49, 55, 130, 169, 223, 304, 367, 373, 374
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	403
BanI	GGYRCC	2 cut(s)	131, 191
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	4 cut(s)	110, 115, 205, 308
BcoDI	GTCTC	1 cut(s)	69
BisI	GCNGC	4 cut(s)	208, 291, 303, 340
BlsI	GCNGC	4 cut(s)	209, 292, 304, 341
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	6 cut(s)	133, 167, 193, 322, 404, 405
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpmI	CTGGAG	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	31
BsaHI	GRCGYC	2 cut(s)	102, 309
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	120, 316, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	120, 316, 324
BseGI	GGATG	3 cut(s)	51, 284, 468
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	194
Bsh1236I	CGCG	3 cut(s)	117, 147, 339
BshFI	GGCC	1 cut(s)	125
BshNI	GGYRCC	2 cut(s)	131, 191
BsiHKCI	CYCGRG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	4, 372
BspACI	CCGC	8 cut(s)	94, 172, 195, 288, 291, 295, 303, 339
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	3 cut(s)	117, 147, 339
BspLI	GGNNCC	6 cut(s)	133, 167, 193, 322, 404, 405
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	131, 191
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	120, 316, 324
BssMI	GATC	2 cut(s)	4, 372
BssNI	GRCGYC	2 cut(s)	102, 309
Bst4CI	ACNGT	2 cut(s)	136, 379
BstACI	GRCGYC	2 cut(s)	102, 309
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	40, 203
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	51, 284, 468
BstFNI	CGCG	3 cut(s)	117, 147, 339
BstHHI	GCGC	2 cut(s)	119, 339
BstKTI	GATC	2 cut(s)	7, 375
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	4, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 299
BstUI	CGCG	3 cut(s)	117, 147, 339
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	51, 284, 468
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	2 cut(s)	119, 339
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	1 cut(s)	91
CviAII	CATG	1 cut(s)	439
DdeI	CTNAG	2 cut(s)	40, 203
DpnI	GATC	2 cut(s)	6, 374
DpnII	GATC	2 cut(s)	4, 372
EciI	GGCGGA	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	403
FaeI	CATG	1 cut(s)	442
FaiI	YATR	1 cut(s)	440
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	1 cut(s)	438
FauI	CCCGC	2 cut(s)	101, 302
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	208, 291, 303, 340
FokI	GGATG	3 cut(s)	38, 271, 455
Fsp4HI	GCNGC	4 cut(s)	208, 291, 303, 340
GlaI	GCGC	2 cut(s)	118, 338
GluI	GCNGC	4 cut(s)	208, 291, 303, 340
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	125
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	119, 339
Hin1I	GRCGYC	2 cut(s)	102, 309
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	2 cut(s)	117, 337
HinP1I	GCGC	2 cut(s)	117, 337
HinfI	GANTC	1 cut(s)	273
HphI	GGTGA	9 cut(s)	49, 55, 130, 169, 223, 304, 367, 373, 374
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	2 cut(s)	249, 397
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	4 cut(s)	131, 188, 191, 255
HpyAV	CCTTC	2 cut(s)	26, 97
HpyCH4III	ACNGT	2 cut(s)	136, 379
HpyCH4IV	ACGT	3 cut(s)	30, 267, 309
HpyCH4V	TGCA	4 cut(s)	210, 370, 424, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 299
HpyF3I	CTNAG	2 cut(s)	40, 203
HpySE526I	ACGT	3 cut(s)	30, 267, 309
Hsp92I	GRCGYC	2 cut(s)	102, 309
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	2 cut(s)	117, 337
KflI	GGGWCCC	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	4, 372
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	5 cut(s)	148, 202, 276, 343, 364
Lsp1109I	GCAGC	1 cut(s)	194
MaeII	ACGT	3 cut(s)	30, 267, 309
MaeIII	GTNAC	3 cut(s)	136, 310, 379
MalI	GATC	2 cut(s)	6, 374
MboI	GATC	2 cut(s)	4, 372
MlyI	GAGTC	1 cut(s)	267
MspA1I	CMGCKG	2 cut(s)	207, 305
Mva1269I	GAATGC	1 cut(s)	210
MvnI	CGCG	3 cut(s)	117, 147, 339
MwoI	GCNNNNNNNGC	2 cut(s)	287, 299
NdeII	GATC	2 cut(s)	4, 372
NlaIII	CATG	1 cut(s)	442
NlaIV	GGNNCC	6 cut(s)	133, 167, 193, 322, 404, 405
NmeAIII	GCCGAG	2 cut(s)	145, 439
NmuCI	GTSAC	3 cut(s)	136, 310, 379
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PctI	GAATGC	1 cut(s)	210
PkrI	GCNGC	4 cut(s)	209, 292, 304, 341
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Ppu21I	YACGTR	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	6 cut(s)	133, 167, 193, 322, 404, 405
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	207
SatI	GCNGC	4 cut(s)	208, 291, 303, 340
Sau3AI	GATC	2 cut(s)	4, 372
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	403
SsiI	CCGC	8 cut(s)	94, 172, 195, 288, 291, 295, 303, 339
TaaI	ACNGT	2 cut(s)	136, 379
TaiI	ACGT	3 cut(s)	33, 270, 312
TaqI	TCGA	4 cut(s)	48, 183, 396, 451
TauI	GCSGC	3 cut(s)	293, 305, 342
TseFI	GTSAC	3 cut(s)	136, 310, 379
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	3 cut(s)	136, 310, 379
VpaK11BI	GGWCC	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	459
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.