AT1G07180

Internal alternative NAD(P)H-ubiquinone oxidoreductase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
2204104 .. 2207099
2996 bp
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UTR
Exon/CDS
Intron
AT1G07180.1

Sequence Viewer

Length: 1533 bp
ATGTTGTGGATCAAAAACCTAGCAAGAATCTCGCAGACCACTTCTTCGTCTGTCGGAAACGTGTTCAGAAACCCCGAATCCTACACTCTCTCGTCCCGTTTCTGCACCGCTCTGCAAAAGCAACAAGTAACCGACACGGTTCAAGCAAAGGAGGATGTAGTTAATGCGTTGGAGCCACAACGTTACGACGGTTTGGCTCCGACGAAAGAGGGAGAGAAGCCGAGAGTTTTGGTTCTCGGGTCGGGTTGGGCGGGTTGTCGGGTATTAAAAGGGATCGATACTAGTATTTACGACGTCGTTTGTGTCTCTCCTAGGAACCACATGGTCTTCACTCCTCTCTTGGCTTCTACTTGCGTTGGTACGCTTGAGTTTAGGTCTGTTGCTGAACCAATCTCTCGTATCCAACCGGCGATTTCACGAGAACCCGGTTCTTATTACTTCCTTGCTAATTGCTCCAAACTTGATGCTGATAATCATGAGGTGCATTGTGAGACTGTAACTGAGGGGTCTAGCACATTGAAGCCATGGAAGTTCAAGATAGCTTATGACAAACTGGTACTAGCTTGTGGTGCAGAAGCATCCACATTTGGAATTAATGGCGTCTTAGAAAACGCCATTTTCCTCCGTGAGGTTCACCACGCTCAGGAGATCCGTAGGAAGCTTCTTCTTAACCTCATGCTCTCTGAAGTTCCAGGCATAGGTGAAGATGAGAAGAAGAGGCTGTTGCATTGCGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGTTTAGTGGTGAATTGAGTGATTTCATCATGAAAGATGTTCGTCAGAGATATTCTCATGTGAAAGACGACATTCGTGTTACTCTGATTGAGGCAAGGGATATACTTTCTTCTTTTGACGATCGGCTAAGGCACTATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTTGTGCGTGGGATTGTGAAAGAAGTGAAGCCTCAGAAGCTAATCCTTGATGATGGCACTGAAGTTCCTTACGGTCCCTTAGTCTGGTCAACTGGTGTTGGTCCATCTTCATTTGTGAGGTCTCTTGATTTTCCTAAAGATCCAGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAGACGTGTTTGCAATTGGTGACTGTAGCGGTTATCTCGAGAGCACAGGGAAATCAACACTTCCTGCACTTGCACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCGAATCTGTTTAACGTGATGGGAAAAGCTGGAGGAGGACGGGCCAATAGCGCAAAGGAAATGGAGCTTGGGGAACCATTTGTGTATAAACATCTCGGAAGTATGGCTACTATTGGGAGATACAAAGCTCTCGTTGATCTCCGTGAGAGCAAGGAAGGGAAAGGAATATCAATGGCAGGTTTTCTGAGCTGGTTCATATGGAGGTCTGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTACGTTGCTATCAATTGGCTCACTACCTTTGTCTTTGGTCGGGACATTAGCCGAATCTGA

Protein Analysis

510

Amino Acids

56.63

Weight (kDa)

8.87

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 75 - 406 6.2e-51 Pyridine nucleotide-disulphide oxidoreductase
NDH2_C PF22366 440 - 506 9.8e-16 NDH2 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
Acc36I ACCTGC 1 cut(s) 1394
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 3 cut(s) 108, 251, 1152
AclI AACGTT 1 cut(s) 181
AclWI GGATC 4 cut(s) 17, 281, 643, 1067
AcuI CTGAAG 2 cut(s) 705, 1014
AcyI GRCGYC 2 cut(s) 294, 600
AfaI GTAC 4 cut(s) 361, 558, 1113, 1122
AfiI CCNNNNNNNGG 4 cut(s) 628, 643, 698, 1017
AflIII ACRYGT 2 cut(s) 60, 1128
AgsI TTSAA 3 cut(s) 143, 520, 535
AhlI ACTAGT 1 cut(s) 281
AjiI CACGTC 1 cut(s) 1129
AjnI CCWGG 2 cut(s) 691, 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 1278, 1310
Alw21I GWGCWC 1 cut(s) 1169
Alw26I GTCTC 3 cut(s) 310, 485, 1059
AlwI GGATC 4 cut(s) 17, 281, 643, 1067
Ama87I CYCGRG 3 cut(s) 236, 1160, 1446
AoxI GGCC 2 cut(s) 749, 1269
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
AseI ATTAAT 1 cut(s) 594
AspA2I CCTAGG 1 cut(s) 311
AspLEI GCGC 1 cut(s) 1280
AspS9I GGNCC 4 cut(s) 749, 1007, 1034, 1269
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 4 cut(s) 626, 713, 785, 1154
AvaI CYCGRG 3 cut(s) 236, 1160, 1446
AvaII GGWCC 2 cut(s) 1007, 1034
AvrII CCTAGG 1 cut(s) 311
BarI GAAGNNNNNNTAC 2 cut(s) 1318, 1350
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 1169
BccI CCATC 3 cut(s) 980, 1045, 1240
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciT130I CCWGG 2 cut(s) 693, 1077
BciVI GTATCC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 310, 485, 1059
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 5 cut(s) 20, 282, 312, 510, 560
BfmI CTRYAG 1 cut(s) 1147
BfuAI ACCTGC 1 cut(s) 1394
BfuI GTATCC 1 cut(s) 410
BlnI CCTAGG 1 cut(s) 311
Bme1390I CCNGG 3 cut(s) 426, 693, 1077
Bme18I GGWCC 2 cut(s) 1007, 1034
BmeT110I CYCGRG 3 cut(s) 236, 1160, 1446
BmgBI CACGTC 1 cut(s) 1129
BmgT120I GGNCC 4 cut(s) 749, 1007, 1034, 1269
BmiI GGNNCC 5 cut(s) 174, 198, 317, 1009, 1302
BmrFI CCNGG 3 cut(s) 426, 693, 1077
BmsI GCATC 3 cut(s) 454, 587, 1095
BoxI GACNNNNGTC 1 cut(s) 1448
BpiI GAAGAC 1 cut(s) 319
BplI GAGNNNNNCTC 2 cut(s) 802, 834
BpmI CTGGAG 3 cut(s) 945, 1278, 1480
Bpu10I CCTNAGC 2 cut(s) 642, 890
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 276
BsaHI GRCGYC 2 cut(s) 294, 600
BsaI GGTCTC 1 cut(s) 1059
BsaJI CCNNGG 2 cut(s) 311, 524
BsaXI ACNNNNNCTCC 2 cut(s) 1453, 1483
Bsc4I CCNNNNNNNGG 4 cut(s) 628, 643, 698, 1017
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 3 cut(s) 558, 760, 1030
Bse3DI GCAATG 1 cut(s) 727
BseBI CCWGG 2 cut(s) 693, 1077
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 311, 524
BseGI GGATG 3 cut(s) 160, 578, 1110
BseLI CCNNNNNNNGG 4 cut(s) 628, 643, 698, 1017
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 5 cut(s) 492, 656, 980, 1197, 1403
BseNI ACTGG 3 cut(s) 558, 760, 1030
BseRI GAGGAG 2 cut(s) 324, 1275
BsgI GTGCAG 3 cut(s) 88, 591, 1173
Bsh1285I CGRYCG 1 cut(s) 886
BshFI GGCC 2 cut(s) 751, 1271
BshVI ATCGAT 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 1169
BsiHKCI CYCGRG 3 cut(s) 236, 1160, 1446
BsiSI CCGG 2 cut(s) 407, 426
BslFI GGGAC 3 cut(s) 79, 993, 1529
BslI CCNNNNNNNGG 4 cut(s) 628, 643, 698, 1017
BsmAI GTCTC 3 cut(s) 310, 485, 1059
BsmFI GGGAC 3 cut(s) 79, 993, 1529
BsnI GGCC 2 cut(s) 751, 1271
Bso31I GGTCTC 1 cut(s) 1059
BsoBI CYCGRG 3 cut(s) 236, 1160, 1446
Bsp1286I GDGCHC 1 cut(s) 1169
Bsp1407I TGTACA 1 cut(s) 1120
Bsp143I GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
Bsp19I CCATGG 1 cut(s) 524
BspACI CCGC 3 cut(s) 108, 251, 1152
BspANI GGCC 2 cut(s) 751, 1271
BspCNI CTCAG 5 cut(s) 493, 655, 979, 1198, 1404
BspDI ATCGAT 1 cut(s) 276
BspHI TCATGA 2 cut(s) 475, 792
BspLI GGNNCC 5 cut(s) 174, 198, 317, 1009, 1302
BspMI ACCTGC 1 cut(s) 1394
BspPI GGATC 4 cut(s) 17, 281, 643, 1067
BspTNI GGTCTC 1 cut(s) 1059
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 727
BsrFI RCCGGY 1 cut(s) 406
BsrGI TGTACA 1 cut(s) 1120
BsrI ACTGG 3 cut(s) 558, 760, 1030
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 311, 524
BssMI GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
BssNI GRCGYC 2 cut(s) 294, 600
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 311, 524
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 693, 1077
Bst4CI ACNGT 6 cut(s) 139, 191, 496, 1007, 1148, 1469
Bst6I CTCTTC 1 cut(s) 710
BstACI GRCGYC 2 cut(s) 294, 600
BstAUI TGTACA 1 cut(s) 1120
BstDEI CTNAG 8 cut(s) 501, 604, 642, 890, 966, 1012, 1206, 1412
BstDSI CCRYGG 1 cut(s) 524
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 3 cut(s) 160, 578, 1110
BstHHI GCGC 1 cut(s) 1280
BstKTI GATC 6 cut(s) 12, 276, 651, 886, 1075, 1366
BstMAI GTCTC 3 cut(s) 310, 485, 1059
BstMBI GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
BstMCI CGRYCG 1 cut(s) 886
BstMWI GCNNNNNNNGC 4 cut(s) 569, 970, 1202, 1277
BstNI CCWGG 2 cut(s) 693, 1077
BstPAI GACNNNNGTC 1 cut(s) 1448
BstSCI CCNGG 3 cut(s) 424, 691, 1075
BstSFI CTRYAG 1 cut(s) 1147
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 648, 1072
BstYI RGATCY 2 cut(s) 648, 1072
Bsu15I ATCGAT 1 cut(s) 276
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 2 cut(s) 751, 1271
BsuTUI ATCGAT 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 524
BtrI CACGTC 1 cut(s) 1129
BtsCI GGATG 3 cut(s) 160, 578, 1110
BtsIMutI CAGTG 1 cut(s) 990
BveI ACCTGC 1 cut(s) 1394
CciI TCATGA 2 cut(s) 475, 792
CfoI GCGC 1 cut(s) 1280
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 4 cut(s) 749, 1007, 1034, 1269
ClaI ATCGAT 1 cut(s) 276
CseI GACGC 1 cut(s) 589
Csp6I GTAC 4 cut(s) 360, 557, 1112, 1121
CviAII CATG 6 cut(s) 322, 476, 525, 676, 793, 821
CviQI GTAC 4 cut(s) 360, 557, 1112, 1121
DdeI CTNAG 8 cut(s) 501, 604, 642, 890, 966, 1012, 1206, 1412
DpnI GATC 6 cut(s) 11, 275, 650, 885, 1074, 1365
DpnII GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Eco130I CCWWGG 2 cut(s) 311, 524
Eco31I GGTCTC 1 cut(s) 1059
Eco47I GGWCC 2 cut(s) 1007, 1034
Eco57I CTGAAG 2 cut(s) 705, 1014
Eco88I CYCGRG 3 cut(s) 236, 1160, 1446
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoRII CCWGG 2 cut(s) 691, 1075
EcoT14I CCWWGG 2 cut(s) 311, 524
ErhI CCWWGG 2 cut(s) 311, 524
FaeI CATG 6 cut(s) 325, 479, 528, 679, 796, 824
FaqI GGGAC 3 cut(s) 79, 993, 1529
FatI CATG 6 cut(s) 321, 475, 524, 675, 792, 820
FauI CCCGC 1 cut(s) 244
FauNDI CATATG 1 cut(s) 1424
FokI GGATG 3 cut(s) 167, 565, 1117
FspBI CTAG 5 cut(s) 20, 282, 312, 510, 560
GlaI GCGC 1 cut(s) 1279
GsuI CTGGAG 3 cut(s) 945, 1278, 1480
HaeIII GGCC 2 cut(s) 751, 1271
HapII CCGG 2 cut(s) 407, 426
HgaI GACGC 1 cut(s) 589
HhaI GCGC 1 cut(s) 1280
Hin1I GRCGYC 2 cut(s) 294, 600
Hin1II CATG 6 cut(s) 325, 479, 528, 679, 796, 824
Hin6I GCGC 1 cut(s) 1278
HinP1I GCGC 1 cut(s) 1278
HincII GTYRAC 1 cut(s) 1023
HindII GTYRAC 1 cut(s) 1023
HindIII AAGCTT 2 cut(s) 659, 932
HinfI GANTC 6 cut(s) 27, 77, 1231, 1444, 1449, 1527
HpaII CCGG 2 cut(s) 407, 426
HphI GGTGA 4 cut(s) 626, 713, 785, 1154
Hpy166II GTNNAC 3 cut(s) 634, 1023, 1112
Hpy8I GTNNAC 3 cut(s) 634, 1023, 1112
Hpy99I CGWCG 4 cut(s) 191, 205, 296, 299
HpyAV CCTTC 4 cut(s) 1077, 1125, 1208, 1376
HpyCH4III ACNGT 6 cut(s) 139, 191, 496, 1007, 1148, 1469
HpyCH4IV ACGT 6 cut(s) 60, 181, 294, 1128, 1242, 1476
HpyCH4V TGCA 9 cut(s) 105, 115, 484, 572, 727, 902, 1136, 1190, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 569, 970, 1202, 1277
HpyF3I CTNAG 8 cut(s) 501, 604, 642, 890, 966, 1012, 1206, 1412
HpySE526I ACGT 6 cut(s) 60, 181, 294, 1128, 1242, 1476
Hsp92I GRCGYC 2 cut(s) 294, 600
Hsp92II CATG 6 cut(s) 325, 479, 528, 679, 796, 824
HspAI GCGC 1 cut(s) 1278
Kzo9I GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
LmnI GCTCC 4 cut(s) 172, 202, 458, 1291
LweI GCATC 3 cut(s) 454, 587, 1095
MaeI CTAG 5 cut(s) 20, 282, 312, 510, 560
MaeII ACGT 6 cut(s) 60, 181, 294, 1128, 1242, 1476
MaeIII GTNAC 5 cut(s) 127, 182, 496, 841, 1142
MalI GATC 6 cut(s) 11, 275, 650, 885, 1074, 1365
MbiI CCGCTC 1 cut(s) 110
MboI GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
MboII GAAGA 8 cut(s) 36, 319, 656, 716, 724, 727, 864, 1032
MfeI CAATTG 2 cut(s) 1137, 1486
MflI RGATCY 2 cut(s) 648, 1072
MhlI GDGCHC 1 cut(s) 1169
MluCI AATT 5 cut(s) 448, 591, 776, 1137, 1486
MlyI GAGTC 2 cut(s) 1438, 1458
MmeI TCCRAC 5 cut(s) 34, 150, 224, 427, 721
MseI TTAA 6 cut(s) 162, 266, 594, 669, 914, 1239
MspA1I CMGCKG 1 cut(s) 1458
MspI CCGG 2 cut(s) 407, 426
MspR9I CCNGG 3 cut(s) 426, 693, 1077
MunI CAATTG 2 cut(s) 1137, 1486
MvaI CCWGG 2 cut(s) 693, 1077
MwoI GCNNNNNNNGC 4 cut(s) 569, 970, 1202, 1277
NciI CCSGG 1 cut(s) 426
NcoI CCATGG 1 cut(s) 524
NdeI CATATG 1 cut(s) 1424
NdeII GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
NlaIII CATG 6 cut(s) 325, 479, 528, 679, 796, 824
NlaIV GGNNCC 5 cut(s) 174, 198, 317, 1009, 1302
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 1142
PaeR7I CTCGAG 2 cut(s) 1160, 1446
PagI TCATGA 2 cut(s) 475, 792
PfeI GAWTC 4 cut(s) 27, 77, 1231, 1527
Ple19I CGATCG 1 cut(s) 886
PleI GAGTC 2 cut(s) 1438, 1457
PpsI GAGTC 2 cut(s) 1438, 1457
PshAI GACNNNNGTC 1 cut(s) 1448
PshBI ATTAAT 1 cut(s) 594
Psp1406I AACGTT 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 691, 1075
PspGI CCWGG 2 cut(s) 691, 1075
PspN4I GGNNCC 5 cut(s) 174, 198, 317, 1009, 1302
PspPI GGNCC 4 cut(s) 749, 1007, 1034, 1269
PspXI VCTCGAGB 1 cut(s) 1446
PsuI RGATCY 2 cut(s) 648, 1072
PvuI CGATCG 1 cut(s) 886
PvuII CAGCTG 1 cut(s) 1458
RsaI GTAC 4 cut(s) 361, 558, 1113, 1122
RsaNI GTAC 4 cut(s) 360, 557, 1112, 1121
SaqAI TTAA 6 cut(s) 162, 266, 594, 669, 914, 1239
Sau3AI GATC 6 cut(s) 9, 273, 648, 883, 1072, 1363
Sau96I GGNCC 4 cut(s) 749, 1007, 1034, 1269
SchI GAGTC 2 cut(s) 1438, 1458
ScrFI CCNGG 3 cut(s) 426, 693, 1077
SduI GDGCHC 1 cut(s) 1169
SfaNI GCATC 3 cut(s) 454, 587, 1095
SfcI CTRYAG 1 cut(s) 1147
Sfr274I CTCGAG 2 cut(s) 1160, 1446
SinI GGWCC 2 cut(s) 1007, 1034
SlaI CTCGAG 2 cut(s) 1160, 1446
SmlI CTYRAG 3 cut(s) 365, 1160, 1446
SmoI CTYRAG 3 cut(s) 365, 1160, 1446
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 5 cut(s) 448, 591, 776, 1137, 1486
SsiI CCGC 3 cut(s) 108, 251, 1152
SspMI CTAG 5 cut(s) 20, 282, 312, 510, 560
StyD4I CCNGG 3 cut(s) 424, 691, 1075
StyI CCWWGG 2 cut(s) 311, 524
TaaI ACNGT 6 cut(s) 139, 191, 496, 1007, 1148, 1469
TaiI ACGT 6 cut(s) 63, 184, 297, 1131, 1245, 1479
TaqI TCGA 3 cut(s) 276, 1161, 1447
TasI AATT 5 cut(s) 448, 591, 776, 1137, 1486
TatI WGTACW 1 cut(s) 1120
TfiI GAWTC 4 cut(s) 27, 77, 1231, 1527
Tru1I TTAA 6 cut(s) 162, 266, 594, 669, 914, 1239
Tru9I TTAA 6 cut(s) 162, 266, 594, 669, 914, 1239
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 1 cut(s) 1142
Tsp45I GTSAC 1 cut(s) 1142
TspDTI ATGAA 4 cut(s) 778, 809, 1032, 1411
TspGWI ACGGA 3 cut(s) 614, 641, 1358
TspRI CASTG 1 cut(s) 997
VpaK11BI GGWCC 2 cut(s) 1007, 1034
VspI ATTAAT 1 cut(s) 594
XagI CCTNNNNNAGG 1 cut(s) 626
XhoI CTCGAG 2 cut(s) 1160, 1446
XmaJI CCTAGG 1 cut(s) 311
XspI CTAG 5 cut(s) 20, 282, 312, 510, 560
ZraI GACGTC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.