Prupe.4G039000_v2.0.a1

Internal alternative NAD(P)H-ubiquinone oxidoreductase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
1827925 .. 1832210
4286 bp
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UTR
Exon/CDS
Intron
Prupe.4G039000.2

Sequence Viewer

Length: 1653 bp
ATGGCATTAGAAAGGATTGCTAGGACTGCTAGAAATGGCTTCAGAAGGTCGCCATCAGGAGCATCCGCCCGCACGAGTGAGAAGGAAATGTTGTGTGAGGGAGCATCCACACGCAAATATTGTTCCTTACCTTCACTCGAAACTGACACTAGAAATAGAAACTTTTTGTACCTCTCCAGCATTTCAAAAGTGAATCACAATAGTTTTTGGAGCAGGGGAATAAGGGCAACCCCAACTTATCAATTTCCTTCTGCAGAAAGGATTGTTGAGGAGTCTGATTCTGAGTACAACGATCCCAAATATCCGGGACTAGAAGCAACCAAGCCAGGTGAAAAGCCAAGAGTGGTTGTCCTTGGTACTGGCTGGGCGGCCTGTCGATTCCTTAAGGGACTAGACACCAAGATCTATGATGTTGTTTGCATATCACCAAGGAATCACATGGTCTTCACTCCTTTGCTTGCTTCAACTTGCGTTGGTACCCTGGAATTCCGTTCAGTCGCTGAACCTGTTACTCATATACAATCTGCATTGGCAACAGATCCCAATTCTTTCTTTTATATGGCTTCCTGCGTTGGTGTTGACACAGACAAACATGAGGTCTACTGTGAGACGATTAGCAAGGGTGGCTTGCCTCATGAACCTTACAGATTCAAAGTTGCCTATGACAAGCTCGTCATAGCTGCTGGAGCTGAGCCCCTGACATTTGGTATCAAGGGTGTGAAGGAACATGCATTTTTTCTCCGTGAAGTGAATCATGCCCAAGAGATTAGGAAGAAGCTTCTCTTGAACCTGATGCTCTCTGAACATCCAGGCATACCAGAGGAAGAAAGGAAACGCCTCCTACATTGTGTTGTTATTGGAGGTGGCCCTACAGGGGTAGAGTTCAGTGGCGAGCTGAGTGATTTTATTATGAAAGATGTCCGTGAACGGTATACTCATGTTAAGGATTACATCAAAGTCACTCTCATTGAGGCAAATGAGATTTTGTCATCCTTCGATGTTGGGTTAAGGCGATATGCAACAAATCACTTAACCAAGTGTGGTGTTCGCCTTATGAGAGGTGTTGTGAAAGAAGTGCATCCCGAGAAGATAGTTCTCAACGATGGCACTGATGTTCCATATGGCCTTTTGGTCTGGTCTACAGGCGTTGGTCCTTCAGAGTTTGTGAAATCACTTGATCTTCCCAAGTCCGCAGGCGGAAGGATTGGTGTCGACGGGTGGTTGCGGGTTCCTTCCGTGGAAGATGTGTTTGCACTTGGAGATTGCGCTGGTTTTCTTGAGCAGACAGGGAGGCCAGTTCTTCCAGCTTTAGCTCAGGTGGCAGAAAGGGAGGGAAAATATCTGGTCCAGTTGTTTAACAAGATTGGGACACAGAATGCAGGCAAGGCCTTGAGCTTAAAAGACATCCCTCTAGGAGAGCCTTTTGTGTACAAGCACCTTGGAAGCATGGCAACAGTTGGACGCTACAAGGCACTGGTTGATTTACGCCAGTCGAAGGATGCAAAAGGCATATCGCTTGCCGGATTCTTGAGCTGGTTCATTTGGCGTTCCGCTTATCTGACGCGAGTCGTCAGCTGGAGGAACAGGTTTTATGTTGCAGTAAACTGGGCTACCACGATTGTCTTTGGCAGAGACAACTCAAGAATAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

551

Amino Acids

61.18

Weight (kDa)

9.08

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
Acc65I GGTACC 1 cut(s) 476
AccB1I GGYRCC 1 cut(s) 476
AccI GTMKAC 4 cut(s) 600, 932, 1139, 1212
AccII CGCG 1 cut(s) 1564
AciI CCGC 7 cut(s) 66, 70, 368, 1191, 1197, 1225, 1551
AclWI GGATC 2 cut(s) 287, 533
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 2 cut(s) 25, 1140
AfaI GTAC 5 cut(s) 170, 287, 358, 478, 1430
AfiI CCNNNNNNNGG 2 cut(s) 874, 1495
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 4 cut(s) 186, 465, 652, 787
AjnI CCWGG 3 cut(s) 325, 480, 808
Alw26I GTCTC 2 cut(s) 602, 1626
AlwI GGATC 2 cut(s) 287, 533
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 1082
AoxI GGCC 5 cut(s) 369, 865, 1123, 1292, 1386
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 1 cut(s) 485
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
Asp718I GGTACC 1 cut(s) 476
AspLEI GCGC 1 cut(s) 1268
AspS9I GGNCC 3 cut(s) 866, 1151, 1345
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 341, 417
AvaI CYCGRG 1 cut(s) 1082
AvaII GGWCC 2 cut(s) 1151, 1345
BanI GGYRCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 696
BauI CACGAG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 667
BccI CCATC 2 cut(s) 61, 1097
BciT130I CCWGG 3 cut(s) 327, 482, 810
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 602, 1626
BfaI CTAG 6 cut(s) 21, 30, 150, 311, 392, 1412
BfmI CTRYAG 3 cut(s) 252, 870, 1140
BfrI CTTAAG 1 cut(s) 383
BglII AGATCT 1 cut(s) 402
BisI GCNGC 2 cut(s) 369, 681
BlpI GCTNAGC 1 cut(s) 690
BlsI GCNGC 2 cut(s) 370, 682
Bme1390I CCNGG 4 cut(s) 306, 327, 482, 810
Bme18I GGWCC 2 cut(s) 1151, 1345
BmeT110I CYCGRG 1 cut(s) 1082
BmgT120I GGNCC 3 cut(s) 866, 1151, 1345
BmiI GGNNCC 2 cut(s) 478, 1230
BmrFI CCNGG 4 cut(s) 306, 327, 482, 810
BmrI ACTGGG 1 cut(s) 1615
BmsI GCATC 5 cut(s) 71, 113, 783, 1087, 1489
BmuI ACTGGG 1 cut(s) 1615
BoxI GACNNNNGTC 1 cut(s) 1565
BpiI GAAGAC 1 cut(s) 436
BpmI CTGGAG 3 cut(s) 160, 705, 1597
Bpu10I CCTNAGC 1 cut(s) 1314
Bpu1102I GCTNAGC 1 cut(s) 690
BpuEI CTTGAG 4 cut(s) 1298, 1411, 1549, 1624
BpuMI CCSGG 1 cut(s) 306
BsaJI CCNNGG 5 cut(s) 352, 428, 480, 1236, 1438
Bsc4I CCNNNNNNNGG 2 cut(s) 874, 1495
Bse1I ACTGG 6 cut(s) 364, 1295, 1348, 1479, 1489, 1610
BseBI CCWGG 3 cut(s) 327, 482, 810
BseDI CCNNGG 5 cut(s) 352, 428, 480, 1236, 1438
BseGI GGATG 7 cut(s) 62, 104, 805, 989, 1078, 1404, 1504
BseLI CCNNNNNNNGG 2 cut(s) 874, 1495
BseMII CTCAG 4 cut(s) 273, 681, 887, 1328
BseNI ACTGG 6 cut(s) 364, 1295, 1348, 1479, 1489, 1610
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 667
BseYI CCCAGC 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 1564
BshFI GGCC 5 cut(s) 371, 867, 1125, 1294, 1388
BshNI GGYRCC 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 1082
BsiSI CCGG 2 cut(s) 305, 1521
BslFI GGGAC 3 cut(s) 321, 402, 1381
BslI CCNNNNNNNGG 2 cut(s) 874, 1495
BsmAI GTCTC 2 cut(s) 602, 1626
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 3 cut(s) 321, 402, 1381
BsmI GAATGC 1 cut(s) 1381
BsnI GGCC 5 cut(s) 371, 867, 1125, 1294, 1388
BsoBI CYCGRG 1 cut(s) 1082
Bsp1286I GDGCHC 1 cut(s) 696
Bsp1407I TGTACA 1 cut(s) 1428
Bsp143I GATC 4 cut(s) 292, 402, 538, 1177
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 7 cut(s) 66, 70, 368, 1191, 1197, 1225, 1551
BspANI GGCC 5 cut(s) 371, 867, 1125, 1294, 1388
BspCNI CTCAG 4 cut(s) 274, 682, 888, 1327
BspFNI CGCG 1 cut(s) 1564
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 478, 1230
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 2 cut(s) 287, 533
BspT107I GGYRCC 1 cut(s) 476
BspTI CTTAAG 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 1428
BsrI ACTGG 6 cut(s) 364, 1295, 1348, 1479, 1489, 1610
BssECI CCNNGG 5 cut(s) 352, 428, 480, 1236, 1438
BssMI GATC 4 cut(s) 292, 402, 538, 1177
BssNAI GTATAC 1 cut(s) 933
BssSI CACGAG 1 cut(s) 73
BssT1I CCWWGG 3 cut(s) 352, 428, 1438
Bst1107I GTATAC 1 cut(s) 933
Bst2BI CACGAG 1 cut(s) 73
Bst2UI CCWGG 3 cut(s) 327, 482, 810
Bst4CI ACNGT 3 cut(s) 605, 930, 1456
BstAFI CTTAAG 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 1428
BstC8I GCNNGC 7 cut(s) 70, 459, 629, 893, 1195, 1381, 1518
BstDEI CTNAG 4 cut(s) 282, 690, 896, 1314
BstDSI CCRYGG 1 cut(s) 1236
BstF5I GGATG 7 cut(s) 62, 104, 805, 989, 1078, 1404, 1504
BstFNI CGCG 1 cut(s) 1564
BstHHI GCGC 1 cut(s) 1268
BstKTI GATC 4 cut(s) 295, 405, 541, 1180
BstMAI GTCTC 2 cut(s) 602, 1626
BstMBI GATC 4 cut(s) 292, 402, 538, 1177
BstMWI GCNNNNNNNGC 5 cut(s) 26, 624, 686, 1319, 1385
BstNI CCWGG 3 cut(s) 327, 482, 810
BstNSI RCATGY 1 cut(s) 731
BstPAI GACNNNNGTC 1 cut(s) 1565
BstSCI CCNGG 4 cut(s) 304, 325, 480, 808
BstSFI CTRYAG 3 cut(s) 252, 870, 1140
BstUI CGCG 1 cut(s) 1564
BstV1I GCAGC 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 2 cut(s) 402, 538
BstYI RGATCY 2 cut(s) 402, 538
BstZ17I GTATAC 1 cut(s) 933
BsuRI GGCC 5 cut(s) 371, 867, 1125, 1294, 1388
BtgI CCRYGG 1 cut(s) 1236
BtsCI GGATG 7 cut(s) 62, 104, 805, 989, 1078, 1404, 1504
BtsIMutI CAGTG 3 cut(s) 892, 1107, 1472
Cac8I GCNNGC 7 cut(s) 70, 459, 629, 893, 1195, 1381, 1518
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 1268
Cfr13I GGNCC 3 cut(s) 866, 1151, 1345
CseI GACGC 2 cut(s) 1470, 1570
Csp6I GTAC 5 cut(s) 169, 286, 357, 477, 1429
CviAII CATG 7 cut(s) 439, 593, 635, 728, 755, 938, 1447
CviQI GTAC 5 cut(s) 169, 286, 357, 477, 1429
DdeI CTNAG 4 cut(s) 282, 690, 896, 1314
DpnI GATC 4 cut(s) 294, 404, 540, 1179
DpnII GATC 4 cut(s) 292, 402, 538, 1177
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
EciI GGCGGA 2 cut(s) 55, 1212
Eco130I CCWWGG 3 cut(s) 352, 428, 1438
Eco147I AGGCCT 1 cut(s) 1388
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 1151, 1345
Eco57I CTGAAG 2 cut(s) 25, 1140
Eco88I CYCGRG 1 cut(s) 1082
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 3 cut(s) 325, 480, 808
EcoT14I CCWWGG 3 cut(s) 352, 428, 1438
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 3 cut(s) 352, 428, 1438
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 7 cut(s) 442, 596, 638, 731, 758, 941, 1450
FalI AAGNNNNNCTT 4 cut(s) 611, 643, 767, 799
FaqI GGGAC 3 cut(s) 321, 402, 1381
FatI CATG 7 cut(s) 438, 592, 634, 727, 754, 937, 1446
FauI CCCGC 2 cut(s) 77, 1218
FauNDI CATATG 1 cut(s) 1120
FblI GTMKAC 4 cut(s) 600, 932, 1139, 1212
Fnu4HI GCNGC 2 cut(s) 369, 681
FokI GGATG 7 cut(s) 49, 91, 792, 976, 1065, 1391, 1511
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 2 cut(s) 369, 681
FspBI CTAG 6 cut(s) 21, 30, 150, 311, 392, 1412
GlaI GCGC 1 cut(s) 1267
GluI GCNGC 2 cut(s) 369, 681
GsaI CCCAGC 1 cut(s) 367
GsuI CTGGAG 3 cut(s) 160, 705, 1597
HaeIII GGCC 5 cut(s) 371, 867, 1125, 1294, 1388
HapII CCGG 2 cut(s) 305, 1521
HgaI GACGC 2 cut(s) 1470, 1570
HhaI GCGC 1 cut(s) 1268
Hin1II CATG 7 cut(s) 442, 596, 638, 731, 758, 941, 1450
Hin6I GCGC 1 cut(s) 1266
HinP1I GCGC 1 cut(s) 1266
HincII GTYRAC 2 cut(s) 580, 1213
HindII GTYRAC 2 cut(s) 580, 1213
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 9 cut(s) 193, 272, 278, 378, 433, 648, 751, 1524, 1566
HpaII CCGG 2 cut(s) 305, 1521
HphI GGTGA 2 cut(s) 341, 417
Hpy166II GTNNAC 8 cut(s) 580, 601, 926, 933, 1140, 1213, 1429, 1603
Hpy188I TCNGA 6 cut(s) 44, 277, 283, 802, 1159, 1560
Hpy188III TCNNGA 7 cut(s) 57, 635, 784, 1082, 1277, 1528, 1641
Hpy8I GTNNAC 8 cut(s) 580, 601, 926, 933, 1140, 1213, 1429, 1603
Hpy99I CGWCG 1 cut(s) 1217
HpyCH4III ACNGT 3 cut(s) 605, 930, 1456
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 624, 686, 1319, 1385
HpyF3I CTNAG 4 cut(s) 282, 690, 896, 1314
Hsp92II CATG 7 cut(s) 442, 596, 638, 731, 758, 941, 1450
HspAI GCGC 1 cut(s) 1266
KpnI GGTACC 1 cut(s) 480
Kzo9I GATC 4 cut(s) 292, 402, 538, 1177
LmnI GCTCC 4 cut(s) 59, 101, 210, 686
Lsp1109I GCAGC 1 cut(s) 667
LweI GCATC 5 cut(s) 71, 113, 783, 1087, 1489
MaeI CTAG 6 cut(s) 21, 30, 150, 311, 392, 1412
MaeIII GTNAC 2 cut(s) 508, 958
MalI GATC 4 cut(s) 294, 404, 540, 1179
MboI GATC 4 cut(s) 292, 402, 538, 1177
MboII GAAGA 7 cut(s) 436, 784, 836, 1099, 1172, 1253, 1292
MflI RGATCY 2 cut(s) 402, 538
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 3 cut(s) 242, 485, 544
MlyI GAGTC 2 cut(s) 281, 1575
MmeI TCCRAC 1 cut(s) 1438
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 6 cut(s) 384, 942, 1007, 1031, 1356, 1397
MspA1I CMGCKG 1 cut(s) 1575
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 2 cut(s) 305, 1521
MspR9I CCNGG 4 cut(s) 306, 327, 482, 810
Mva1269I GAATGC 1 cut(s) 1381
MvaI CCWGG 3 cut(s) 327, 482, 810
MvnI CGCG 1 cut(s) 1564
MwoI GCNNNNNNNGC 5 cut(s) 26, 624, 686, 1319, 1385
NciI CCSGG 1 cut(s) 306
NdeI CATATG 1 cut(s) 1120
NdeII GATC 4 cut(s) 292, 402, 538, 1177
NlaIII CATG 7 cut(s) 442, 596, 638, 731, 758, 941, 1450
NlaIV GGNNCC 2 cut(s) 478, 1230
NmuCI GTSAC 1 cut(s) 958
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 1 cut(s) 731
PagI TCATGA 1 cut(s) 634
PceI AGGCCT 1 cut(s) 1388
PctI GAATGC 1 cut(s) 1381
PfeI GAWTC 7 cut(s) 193, 278, 378, 433, 648, 751, 1524
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 2 cut(s) 370, 682
PleI GAGTC 2 cut(s) 280, 1574
PpsI GAGTC 2 cut(s) 280, 1574
PshAI GACNNNNGTC 1 cut(s) 1565
Psp6I CCWGG 3 cut(s) 325, 480, 808
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 3 cut(s) 325, 480, 808
PspN4I GGNNCC 2 cut(s) 478, 1230
PspPI GGNCC 3 cut(s) 866, 1151, 1345
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 402, 538
PvuII CAGCTG 1 cut(s) 1575
RsaI GTAC 5 cut(s) 170, 287, 358, 478, 1430
RsaNI GTAC 5 cut(s) 169, 286, 357, 477, 1429
SalI GTCGAC 1 cut(s) 1211
SaqAI TTAA 6 cut(s) 384, 942, 1007, 1031, 1356, 1397
SatI GCNGC 2 cut(s) 369, 681
Sau3AI GATC 4 cut(s) 292, 402, 538, 1177
Sau96I GGNCC 3 cut(s) 866, 1151, 1345
SchI GAGTC 2 cut(s) 281, 1575
ScrFI CCNGG 4 cut(s) 306, 327, 482, 810
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 5 cut(s) 71, 113, 783, 1087, 1489
SfcI CTRYAG 3 cut(s) 252, 870, 1140
SinI GGWCC 2 cut(s) 1151, 1345
SmlI CTYRAG 5 cut(s) 383, 1277, 1390, 1528, 1639
SmoI CTYRAG 5 cut(s) 383, 1277, 1390, 1528, 1639
Sse9I AATT 3 cut(s) 242, 485, 544
SseBI AGGCCT 1 cut(s) 1388
SsiI CCGC 7 cut(s) 66, 70, 368, 1191, 1197, 1225, 1551
SspI AATATT 1 cut(s) 119
SspMI CTAG 6 cut(s) 21, 30, 150, 311, 392, 1412
StuI AGGCCT 1 cut(s) 1388
StyD4I CCNGG 4 cut(s) 304, 325, 480, 808
StyI CCWWGG 3 cut(s) 352, 428, 1438
TaaI ACNGT 3 cut(s) 605, 930, 1456
TaqI TCGA 5 cut(s) 138, 376, 996, 1212, 1493
TasI AATT 3 cut(s) 242, 485, 544
TatI WGTACW 2 cut(s) 285, 1428
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 7 cut(s) 193, 278, 378, 433, 648, 751, 1524
Tru1I TTAA 6 cut(s) 384, 942, 1007, 1031, 1356, 1397
Tru9I TTAA 6 cut(s) 384, 942, 1007, 1031, 1356, 1397
TscAI CASTG 3 cut(s) 892, 1114, 1479
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 3 cut(s) 651, 926, 1528
TspGWI ACGGA 4 cut(s) 479, 731, 911, 1225
TspRI CASTG 3 cut(s) 892, 1114, 1479
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 1151, 1345
XapI RAATTY 1 cut(s) 485
XceI RCATGY 1 cut(s) 731
XmiI GTMKAC 4 cut(s) 600, 932, 1139, 1212
XspI CTAG 6 cut(s) 21, 30, 150, 311, 392, 1412
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.