Internal alternative NAD(P)H-ubiquinone oxidoreductase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07180 AT2G29990 |
| fragaria_vesca | FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g38840 |
| malus_domestica | MD03G1067100.v1.1 MD05G1323500.v1.1 MD10G1301300.v1.1 |
| prunus_persica | Prupe.4G039000_v2.0.a1 Prupe.4G039000_v2.0.a1 Prupe.6G055600_v2.0.a1 |
| pyrus_communis | pycom03g05350 pycom05g29800 pycom10g25410 |
| rosa_chinensis | RchiOBHm_Chr5g0006761 RchiOBHm_Chr5g0070091 |
| rosa_laevigata | RLG00000031427 RLG00000036113 |
| rosa_multiflora | Rmu_sc0001044.1_g000041 Rmu_sc0002367.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00011050 Rroxscaffold_1G00069280 |
| rosa_rugosa | Rorug04G0424200 Rorug04G0424300 Rorug05G0402300 |
| rosa_samantha | Rh5AG052200 Rh5AG458700 Rh5BG051100 Rh5BG477300 Rh5CG059700 Rh5CG501000 Rh5DG489400 |
| rosa_wichuraiana | Rw5G005230 Rw5G042810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 671 |
| Acc65I | GGTACC | 1 cut(s) | 476 |
| AccB1I | GGYRCC | 1 cut(s) | 476 |
| AccI | GTMKAC | 4 cut(s) | 600, 932, 1139, 1212 |
| AccII | CGCG | 1 cut(s) | 1564 |
| AciI | CCGC | 7 cut(s) | 66, 70, 368, 1191, 1197, 1225, 1551 |
| AclWI | GGATC | 2 cut(s) | 287, 533 |
| AcsI | RAATTY | 1 cut(s) | 485 |
| AcuI | CTGAAG | 2 cut(s) | 25, 1140 |
| AfaI | GTAC | 5 cut(s) | 170, 287, 358, 478, 1430 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 874, 1495 |
| AflII | CTTAAG | 1 cut(s) | 383 |
| AgsI | TTSAA | 4 cut(s) | 186, 465, 652, 787 |
| AjnI | CCWGG | 3 cut(s) | 325, 480, 808 |
| Alw26I | GTCTC | 2 cut(s) | 602, 1626 |
| AlwI | GGATC | 2 cut(s) | 287, 533 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 500 |
| Ama87I | CYCGRG | 1 cut(s) | 1082 |
| AoxI | GGCC | 5 cut(s) | 369, 865, 1123, 1292, 1386 |
| ApeKI | GCWGC | 1 cut(s) | 680 |
| ApoI | RAATTY | 1 cut(s) | 485 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 582, 614 |
| Asp718I | GGTACC | 1 cut(s) | 476 |
| AspLEI | GCGC | 1 cut(s) | 1268 |
| AspS9I | GGNCC | 3 cut(s) | 866, 1151, 1345 |
| AsuC2I | CCSGG | 1 cut(s) | 306 |
| AsuHPI | GGTGA | 2 cut(s) | 341, 417 |
| AvaI | CYCGRG | 1 cut(s) | 1082 |
| AvaII | GGWCC | 2 cut(s) | 1151, 1345 |
| BanI | GGYRCC | 1 cut(s) | 476 |
| BanII | GRGCYC | 1 cut(s) | 696 |
| BauI | CACGAG | 1 cut(s) | 73 |
| BbsI | GAAGAC | 1 cut(s) | 436 |
| BbvI | GCAGC | 1 cut(s) | 667 |
| BccI | CCATC | 2 cut(s) | 61, 1097 |
| BciT130I | CCWGG | 3 cut(s) | 327, 482, 810 |
| BcnI | CCSGG | 1 cut(s) | 306 |
| BcoDI | GTCTC | 2 cut(s) | 602, 1626 |
| BfaI | CTAG | 6 cut(s) | 21, 30, 150, 311, 392, 1412 |
| BfmI | CTRYAG | 3 cut(s) | 252, 870, 1140 |
| BfrI | CTTAAG | 1 cut(s) | 383 |
| BglII | AGATCT | 1 cut(s) | 402 |
| BisI | GCNGC | 2 cut(s) | 369, 681 |
| BlpI | GCTNAGC | 1 cut(s) | 690 |
| BlsI | GCNGC | 2 cut(s) | 370, 682 |
| Bme1390I | CCNGG | 4 cut(s) | 306, 327, 482, 810 |
| Bme18I | GGWCC | 2 cut(s) | 1151, 1345 |
| BmeT110I | CYCGRG | 1 cut(s) | 1082 |
| BmgT120I | GGNCC | 3 cut(s) | 866, 1151, 1345 |
| BmiI | GGNNCC | 2 cut(s) | 478, 1230 |
| BmrFI | CCNGG | 4 cut(s) | 306, 327, 482, 810 |
| BmrI | ACTGGG | 1 cut(s) | 1615 |
| BmsI | GCATC | 5 cut(s) | 71, 113, 783, 1087, 1489 |
| BmuI | ACTGGG | 1 cut(s) | 1615 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1565 |
| BpiI | GAAGAC | 1 cut(s) | 436 |
| BpmI | CTGGAG | 3 cut(s) | 160, 705, 1597 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1314 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 690 |
| BpuEI | CTTGAG | 4 cut(s) | 1298, 1411, 1549, 1624 |
| BpuMI | CCSGG | 1 cut(s) | 306 |
| BsaJI | CCNNGG | 5 cut(s) | 352, 428, 480, 1236, 1438 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 874, 1495 |
| Bse1I | ACTGG | 6 cut(s) | 364, 1295, 1348, 1479, 1489, 1610 |
| BseBI | CCWGG | 3 cut(s) | 327, 482, 810 |
| BseDI | CCNNGG | 5 cut(s) | 352, 428, 480, 1236, 1438 |
| BseGI | GGATG | 7 cut(s) | 62, 104, 805, 989, 1078, 1404, 1504 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 874, 1495 |
| BseMII | CTCAG | 4 cut(s) | 273, 681, 887, 1328 |
| BseNI | ACTGG | 6 cut(s) | 364, 1295, 1348, 1479, 1489, 1610 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 1 cut(s) | 667 |
| BseYI | CCCAGC | 1 cut(s) | 363 |
| Bsh1236I | CGCG | 1 cut(s) | 1564 |
| BshFI | GGCC | 5 cut(s) | 371, 867, 1125, 1294, 1388 |
| BshNI | GGYRCC | 1 cut(s) | 476 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1082 |
| BsiSI | CCGG | 2 cut(s) | 305, 1521 |
| BslFI | GGGAC | 3 cut(s) | 321, 402, 1381 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 874, 1495 |
| BsmAI | GTCTC | 2 cut(s) | 602, 1626 |
| BsmBI | CGTCTC | 1 cut(s) | 602 |
| BsmFI | GGGAC | 3 cut(s) | 321, 402, 1381 |
| BsmI | GAATGC | 1 cut(s) | 1381 |
| BsnI | GGCC | 5 cut(s) | 371, 867, 1125, 1294, 1388 |
| BsoBI | CYCGRG | 1 cut(s) | 1082 |
| Bsp1286I | GDGCHC | 1 cut(s) | 696 |
| Bsp1407I | TGTACA | 1 cut(s) | 1428 |
| Bsp143I | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 690 |
| BspACI | CCGC | 7 cut(s) | 66, 70, 368, 1191, 1197, 1225, 1551 |
| BspANI | GGCC | 5 cut(s) | 371, 867, 1125, 1294, 1388 |
| BspCNI | CTCAG | 4 cut(s) | 274, 682, 888, 1327 |
| BspFNI | CGCG | 1 cut(s) | 1564 |
| BspHI | TCATGA | 1 cut(s) | 634 |
| BspLI | GGNNCC | 2 cut(s) | 478, 1230 |
| BspMAI | CTGCAG | 1 cut(s) | 256 |
| BspPI | GGATC | 2 cut(s) | 287, 533 |
| BspT107I | GGYRCC | 1 cut(s) | 476 |
| BspTI | CTTAAG | 1 cut(s) | 383 |
| BsrGI | TGTACA | 1 cut(s) | 1428 |
| BsrI | ACTGG | 6 cut(s) | 364, 1295, 1348, 1479, 1489, 1610 |
| BssECI | CCNNGG | 5 cut(s) | 352, 428, 480, 1236, 1438 |
| BssMI | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| BssNAI | GTATAC | 1 cut(s) | 933 |
| BssSI | CACGAG | 1 cut(s) | 73 |
| BssT1I | CCWWGG | 3 cut(s) | 352, 428, 1438 |
| Bst1107I | GTATAC | 1 cut(s) | 933 |
| Bst2BI | CACGAG | 1 cut(s) | 73 |
| Bst2UI | CCWGG | 3 cut(s) | 327, 482, 810 |
| Bst4CI | ACNGT | 3 cut(s) | 605, 930, 1456 |
| BstAFI | CTTAAG | 1 cut(s) | 383 |
| BstAUI | TGTACA | 1 cut(s) | 1428 |
| BstC8I | GCNNGC | 7 cut(s) | 70, 459, 629, 893, 1195, 1381, 1518 |
| BstDEI | CTNAG | 4 cut(s) | 282, 690, 896, 1314 |
| BstDSI | CCRYGG | 1 cut(s) | 1236 |
| BstF5I | GGATG | 7 cut(s) | 62, 104, 805, 989, 1078, 1404, 1504 |
| BstFNI | CGCG | 1 cut(s) | 1564 |
| BstHHI | GCGC | 1 cut(s) | 1268 |
| BstKTI | GATC | 4 cut(s) | 295, 405, 541, 1180 |
| BstMAI | GTCTC | 2 cut(s) | 602, 1626 |
| BstMBI | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 26, 624, 686, 1319, 1385 |
| BstNI | CCWGG | 3 cut(s) | 327, 482, 810 |
| BstNSI | RCATGY | 1 cut(s) | 731 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1565 |
| BstSCI | CCNGG | 4 cut(s) | 304, 325, 480, 808 |
| BstSFI | CTRYAG | 3 cut(s) | 252, 870, 1140 |
| BstUI | CGCG | 1 cut(s) | 1564 |
| BstV1I | GCAGC | 1 cut(s) | 667 |
| BstV2I | GAAGAC | 1 cut(s) | 436 |
| BstX2I | RGATCY | 2 cut(s) | 402, 538 |
| BstYI | RGATCY | 2 cut(s) | 402, 538 |
| BstZ17I | GTATAC | 1 cut(s) | 933 |
| BsuRI | GGCC | 5 cut(s) | 371, 867, 1125, 1294, 1388 |
| BtgI | CCRYGG | 1 cut(s) | 1236 |
| BtsCI | GGATG | 7 cut(s) | 62, 104, 805, 989, 1078, 1404, 1504 |
| BtsIMutI | CAGTG | 3 cut(s) | 892, 1107, 1472 |
| Cac8I | GCNNGC | 7 cut(s) | 70, 459, 629, 893, 1195, 1381, 1518 |
| CaiI | CAGNNNCTG | 1 cut(s) | 500 |
| CciI | TCATGA | 1 cut(s) | 634 |
| CfoI | GCGC | 1 cut(s) | 1268 |
| Cfr13I | GGNCC | 3 cut(s) | 866, 1151, 1345 |
| CseI | GACGC | 2 cut(s) | 1470, 1570 |
| Csp6I | GTAC | 5 cut(s) | 169, 286, 357, 477, 1429 |
| CviAII | CATG | 7 cut(s) | 439, 593, 635, 728, 755, 938, 1447 |
| CviQI | GTAC | 5 cut(s) | 169, 286, 357, 477, 1429 |
| DdeI | CTNAG | 4 cut(s) | 282, 690, 896, 1314 |
| DpnI | GATC | 4 cut(s) | 294, 404, 540, 1179 |
| DpnII | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 671 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 671 |
| EciI | GGCGGA | 2 cut(s) | 55, 1212 |
| Eco130I | CCWWGG | 3 cut(s) | 352, 428, 1438 |
| Eco147I | AGGCCT | 1 cut(s) | 1388 |
| Eco24I | GRGCYC | 1 cut(s) | 696 |
| Eco47I | GGWCC | 2 cut(s) | 1151, 1345 |
| Eco57I | CTGAAG | 2 cut(s) | 25, 1140 |
| Eco88I | CYCGRG | 1 cut(s) | 1082 |
| EcoRI | GAATTC | 1 cut(s) | 485 |
| EcoRII | CCWGG | 3 cut(s) | 325, 480, 808 |
| EcoT14I | CCWWGG | 3 cut(s) | 352, 428, 1438 |
| EcoT22I | ATGCAT | 1 cut(s) | 733 |
| EcoT38I | GRGCYC | 1 cut(s) | 696 |
| ErhI | CCWWGG | 3 cut(s) | 352, 428, 1438 |
| Esp3I | CGTCTC | 1 cut(s) | 602 |
| FaeI | CATG | 7 cut(s) | 442, 596, 638, 731, 758, 941, 1450 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 611, 643, 767, 799 |
| FaqI | GGGAC | 3 cut(s) | 321, 402, 1381 |
| FatI | CATG | 7 cut(s) | 438, 592, 634, 727, 754, 937, 1446 |
| FauI | CCCGC | 2 cut(s) | 77, 1218 |
| FauNDI | CATATG | 1 cut(s) | 1120 |
| FblI | GTMKAC | 4 cut(s) | 600, 932, 1139, 1212 |
| Fnu4HI | GCNGC | 2 cut(s) | 369, 681 |
| FokI | GGATG | 7 cut(s) | 49, 91, 792, 976, 1065, 1391, 1511 |
| FriOI | GRGCYC | 1 cut(s) | 696 |
| Fsp4HI | GCNGC | 2 cut(s) | 369, 681 |
| FspBI | CTAG | 6 cut(s) | 21, 30, 150, 311, 392, 1412 |
| GlaI | GCGC | 1 cut(s) | 1267 |
| GluI | GCNGC | 2 cut(s) | 369, 681 |
| GsaI | CCCAGC | 1 cut(s) | 367 |
| GsuI | CTGGAG | 3 cut(s) | 160, 705, 1597 |
| HaeIII | GGCC | 5 cut(s) | 371, 867, 1125, 1294, 1388 |
| HapII | CCGG | 2 cut(s) | 305, 1521 |
| HgaI | GACGC | 2 cut(s) | 1470, 1570 |
| HhaI | GCGC | 1 cut(s) | 1268 |
| Hin1II | CATG | 7 cut(s) | 442, 596, 638, 731, 758, 941, 1450 |
| Hin6I | GCGC | 1 cut(s) | 1266 |
| HinP1I | GCGC | 1 cut(s) | 1266 |
| HincII | GTYRAC | 2 cut(s) | 580, 1213 |
| HindII | GTYRAC | 2 cut(s) | 580, 1213 |
| HindIII | AAGCTT | 1 cut(s) | 776 |
| HinfI | GANTC | 9 cut(s) | 193, 272, 278, 378, 433, 648, 751, 1524, 1566 |
| HpaII | CCGG | 2 cut(s) | 305, 1521 |
| HphI | GGTGA | 2 cut(s) | 341, 417 |
| Hpy166II | GTNNAC | 8 cut(s) | 580, 601, 926, 933, 1140, 1213, 1429, 1603 |
| Hpy188I | TCNGA | 6 cut(s) | 44, 277, 283, 802, 1159, 1560 |
| Hpy188III | TCNNGA | 7 cut(s) | 57, 635, 784, 1082, 1277, 1528, 1641 |
| Hpy8I | GTNNAC | 8 cut(s) | 580, 601, 926, 933, 1140, 1213, 1429, 1603 |
| Hpy99I | CGWCG | 1 cut(s) | 1217 |
| HpyCH4III | ACNGT | 3 cut(s) | 605, 930, 1456 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 26, 624, 686, 1319, 1385 |
| HpyF3I | CTNAG | 4 cut(s) | 282, 690, 896, 1314 |
| Hsp92II | CATG | 7 cut(s) | 442, 596, 638, 731, 758, 941, 1450 |
| HspAI | GCGC | 1 cut(s) | 1266 |
| KpnI | GGTACC | 1 cut(s) | 480 |
| Kzo9I | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| LmnI | GCTCC | 4 cut(s) | 59, 101, 210, 686 |
| Lsp1109I | GCAGC | 1 cut(s) | 667 |
| LweI | GCATC | 5 cut(s) | 71, 113, 783, 1087, 1489 |
| MaeI | CTAG | 6 cut(s) | 21, 30, 150, 311, 392, 1412 |
| MaeIII | GTNAC | 2 cut(s) | 508, 958 |
| MalI | GATC | 4 cut(s) | 294, 404, 540, 1179 |
| MboI | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| MboII | GAAGA | 7 cut(s) | 436, 784, 836, 1099, 1172, 1253, 1292 |
| MflI | RGATCY | 2 cut(s) | 402, 538 |
| MhlI | GDGCHC | 1 cut(s) | 696 |
| MluCI | AATT | 3 cut(s) | 242, 485, 544 |
| MlyI | GAGTC | 2 cut(s) | 281, 1575 |
| MmeI | TCCRAC | 1 cut(s) | 1438 |
| Mph1103I | ATGCAT | 1 cut(s) | 733 |
| MseI | TTAA | 6 cut(s) | 384, 942, 1007, 1031, 1356, 1397 |
| MspA1I | CMGCKG | 1 cut(s) | 1575 |
| MspCI | CTTAAG | 1 cut(s) | 383 |
| MspI | CCGG | 2 cut(s) | 305, 1521 |
| MspR9I | CCNGG | 4 cut(s) | 306, 327, 482, 810 |
| Mva1269I | GAATGC | 1 cut(s) | 1381 |
| MvaI | CCWGG | 3 cut(s) | 327, 482, 810 |
| MvnI | CGCG | 1 cut(s) | 1564 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 26, 624, 686, 1319, 1385 |
| NciI | CCSGG | 1 cut(s) | 306 |
| NdeI | CATATG | 1 cut(s) | 1120 |
| NdeII | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| NlaIII | CATG | 7 cut(s) | 442, 596, 638, 731, 758, 941, 1450 |
| NlaIV | GGNNCC | 2 cut(s) | 478, 1230 |
| NmuCI | GTSAC | 1 cut(s) | 958 |
| NsiI | ATGCAT | 1 cut(s) | 733 |
| NspI | RCATGY | 1 cut(s) | 731 |
| PagI | TCATGA | 1 cut(s) | 634 |
| PceI | AGGCCT | 1 cut(s) | 1388 |
| PctI | GAATGC | 1 cut(s) | 1381 |
| PfeI | GAWTC | 7 cut(s) | 193, 278, 378, 433, 648, 751, 1524 |
| PfoI | TCCNGGA | 1 cut(s) | 304 |
| PkrI | GCNGC | 2 cut(s) | 370, 682 |
| PleI | GAGTC | 2 cut(s) | 280, 1574 |
| PpsI | GAGTC | 2 cut(s) | 280, 1574 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1565 |
| Psp6I | CCWGG | 3 cut(s) | 325, 480, 808 |
| PspFI | CCCAGC | 1 cut(s) | 363 |
| PspGI | CCWGG | 3 cut(s) | 325, 480, 808 |
| PspN4I | GGNNCC | 2 cut(s) | 478, 1230 |
| PspPI | GGNCC | 3 cut(s) | 866, 1151, 1345 |
| PstI | CTGCAG | 1 cut(s) | 256 |
| PstNI | CAGNNNCTG | 1 cut(s) | 500 |
| PsuI | RGATCY | 2 cut(s) | 402, 538 |
| PvuII | CAGCTG | 1 cut(s) | 1575 |
| RsaI | GTAC | 5 cut(s) | 170, 287, 358, 478, 1430 |
| RsaNI | GTAC | 5 cut(s) | 169, 286, 357, 477, 1429 |
| SalI | GTCGAC | 1 cut(s) | 1211 |
| SaqAI | TTAA | 6 cut(s) | 384, 942, 1007, 1031, 1356, 1397 |
| SatI | GCNGC | 2 cut(s) | 369, 681 |
| Sau3AI | GATC | 4 cut(s) | 292, 402, 538, 1177 |
| Sau96I | GGNCC | 3 cut(s) | 866, 1151, 1345 |
| SchI | GAGTC | 2 cut(s) | 281, 1575 |
| ScrFI | CCNGG | 4 cut(s) | 306, 327, 482, 810 |
| SduI | GDGCHC | 1 cut(s) | 696 |
| SfaNI | GCATC | 5 cut(s) | 71, 113, 783, 1087, 1489 |
| SfcI | CTRYAG | 3 cut(s) | 252, 870, 1140 |
| SinI | GGWCC | 2 cut(s) | 1151, 1345 |
| SmlI | CTYRAG | 5 cut(s) | 383, 1277, 1390, 1528, 1639 |
| SmoI | CTYRAG | 5 cut(s) | 383, 1277, 1390, 1528, 1639 |
| Sse9I | AATT | 3 cut(s) | 242, 485, 544 |
| SseBI | AGGCCT | 1 cut(s) | 1388 |
| SsiI | CCGC | 7 cut(s) | 66, 70, 368, 1191, 1197, 1225, 1551 |
| SspI | AATATT | 1 cut(s) | 119 |
| SspMI | CTAG | 6 cut(s) | 21, 30, 150, 311, 392, 1412 |
| StuI | AGGCCT | 1 cut(s) | 1388 |
| StyD4I | CCNGG | 4 cut(s) | 304, 325, 480, 808 |
| StyI | CCWWGG | 3 cut(s) | 352, 428, 1438 |
| TaaI | ACNGT | 3 cut(s) | 605, 930, 1456 |
| TaqI | TCGA | 5 cut(s) | 138, 376, 996, 1212, 1493 |
| TasI | AATT | 3 cut(s) | 242, 485, 544 |
| TatI | WGTACW | 2 cut(s) | 285, 1428 |
| TauI | GCSGC | 1 cut(s) | 371 |
| TfiI | GAWTC | 7 cut(s) | 193, 278, 378, 433, 648, 751, 1524 |
| Tru1I | TTAA | 6 cut(s) | 384, 942, 1007, 1031, 1356, 1397 |
| Tru9I | TTAA | 6 cut(s) | 384, 942, 1007, 1031, 1356, 1397 |
| TscAI | CASTG | 3 cut(s) | 892, 1114, 1479 |
| TseFI | GTSAC | 1 cut(s) | 958 |
| TseI | GCWGC | 1 cut(s) | 680 |
| Tsp45I | GTSAC | 1 cut(s) | 958 |
| TspDTI | ATGAA | 3 cut(s) | 651, 926, 1528 |
| TspGWI | ACGGA | 4 cut(s) | 479, 731, 911, 1225 |
| TspRI | CASTG | 3 cut(s) | 892, 1114, 1479 |
| Vha464I | CTTAAG | 1 cut(s) | 383 |
| VpaK11BI | GGWCC | 2 cut(s) | 1151, 1345 |
| XapI | RAATTY | 1 cut(s) | 485 |
| XceI | RCATGY | 1 cut(s) | 731 |
| XmiI | GTMKAC | 4 cut(s) | 600, 932, 1139, 1212 |
| XspI | CTAG | 6 cut(s) | 21, 30, 150, 311, 392, 1412 |
| Zsp2I | ATGCAT | 1 cut(s) | 733 |