Rmu_sc0001044.1_g000041

Internal alternative NAD(P)H-ubiquinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001044.1
Physical Location & Seq
Reverse (-)
161388 .. 164375
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001044.1_g000041.1.cds

Sequence Viewer

Length: 1650 bp
atggctttagaaaggattgctaggactgctaggagtagctgcagaaggtcaggaggtgcctttggtggtcacaacagtgaaaaggatatgttctctgagggagcatccacgcgcaaatattgttctttaccttcacttgaacgttacaccagaaatagcaatttttcgtacctttccagcattccaaaggtgaatcacagtagcttttggagcaggggaataaggacaaccccaagttatcaatttccatctgcagaaaggattgttgaggagtctgatttggagtgtaatgatcccaagtatccgggtctagaggcaactaagccaggtgaaaagccaagagtggttgttcttggtactggctgggctgcctgtcgattccttaagggactagacacaaagatttatgatgttgtttgcatatcaccaaggaatcacatggtcttcactcctttgcttgcttcaacttgtgttggtaccttggaattccgttcagttgctgaacctgtcagtcgtatacaatctgcactggcaacaaatcccaactcatacttctatctggcttcctgctttggcattgacacaaacaaacatgaggtgtactgcgagacagtcagcaacggtggtttgcctaatgaaccttacagattcaaagttgcctatgacaagcttgtcatagcagctggatccgagcccttgacatttgggatcaaaggtgtgacagaaaatgcatttttcctccgagaagtgaatcatgcccaagagattagaaagaagcttctcttgaacttgatgctctcggacaacccaggcatatcagaggaagaaaggaaacgcctcttgcattgtgttgttatcggaggtggccctaccggggtggagttcagtggtgaattgagtgatttcatcatgaaagatgtccgtgaaaggtatactcatgttaaggactacatcaaagtcaccctcattgaggctaatgagattctatcatccttcgacgttggattaagacagtatgcaaccaatcacctgaccaagagtggtgttagccttatgcgaggtgttgtgaaagaggtgcatgcaaagaagatagttcttaacaatggcactgatgttccatatggcctattggtctggtctacaggcgttggtccctcacagtttgtgaaatcacttgatcttcccaagtcccctggtggaaggatcggtgttgatgggtggttgagagttcctgctgtggaagatgtgtttgcacttggagattgcgcaggttttcttgaagagacagggaagccagtgcttccagctttagctcaggtggcagaaagggaaggaaaatttctggtggcgatgtttaacaggattgggaaggaggcaggtaaggccatgagtgcaaaaaatatctatctgggagagcctttcgtctaccaacacctcggaagtatggcatccgttggaggttacaaggcacttgttgatctgcgccaatccaaggatgcaaagggcataacgcatgctggatttgttagctggttcatctggcgctctgcttatcttacccgagttgtaagttggaggaacaggttctatgttgctgtcaactgggctaccacgctggtgtttggcagagataactcaagaataggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

549

Amino Acids

60.7

Weight (kDa)

9.13

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
Acc16I TGCGCA 1 cut(s) 1267
Acc36I ACCTGC 2 cut(s) 1259, 1367
Acc65I GGTACC 1 cut(s) 476
AccB1I GGYRCC 2 cut(s) 56, 476
AccI GTMKAC 4 cut(s) 517, 932, 1139, 1425
AccII CGCG 1 cut(s) 112
AclI AACGTT 1 cut(s) 142
AclWI GGATC 5 cut(s) 287, 681, 694, 716, 1211
AcsI RAATTY 2 cut(s) 485, 1337
AfaI GTAC 4 cut(s) 170, 358, 478, 602
AfiI CCNNNNNNNGG 3 cut(s) 874, 970, 1492
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 5 cut(s) 140, 465, 652, 787, 1280
AjnI CCWGG 3 cut(s) 325, 808, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AleI CACNNNNGTG 2 cut(s) 75, 1616
AluBI AGCT 8 cut(s) 39, 204, 670, 683, 778, 1307, 1313, 1530
AluI AGCT 8 cut(s) 39, 204, 670, 683, 778, 1307, 1313, 1530
Alw26I GTCTC 2 cut(s) 602, 1277
AlwI GGATC 5 cut(s) 287, 681, 694, 716, 1211
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 1560
AoxI GGCC 3 cut(s) 865, 1123, 1383
ApeKI GCWGC 3 cut(s) 39, 368, 680
ApoI RAATTY 2 cut(s) 485, 1337
Asp700I GAANNNNTTC 1 cut(s) 1583
Asp718I GGTACC 1 cut(s) 476
AspLEI GCGC 4 cut(s) 114, 1268, 1485, 1545
AspS9I GGNCC 2 cut(s) 866, 1151
AsuC2I CCSGG 2 cut(s) 306, 874
AsuHPI GGTGA 6 cut(s) 202, 341, 417, 902, 952, 1019
AvaI CYCGRG 1 cut(s) 1560
AvaII GGWCC 1 cut(s) 1151
BamHI GGATCC 1 cut(s) 686
BanI GGYRCC 2 cut(s) 56, 476
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 3 cut(s) 26, 355, 692
BccI CCATC 2 cut(s) 256, 1208
BciT130I CCWGG 3 cut(s) 327, 810, 1194
BciVI GTATCC 1 cut(s) 312
BcnI CCSGG 2 cut(s) 306, 874
BcoDI GTCTC 2 cut(s) 602, 1277
BfaI CTAG 4 cut(s) 21, 30, 311, 392
BfmI CTRYAG 3 cut(s) 40, 252, 1140
BfoI RGCGCY 1 cut(s) 1546
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 2 cut(s) 1259, 1367
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 3 cut(s) 40, 369, 681
BlsI GCNGC 3 cut(s) 41, 370, 682
Bme1390I CCNGG 5 cut(s) 306, 327, 810, 874, 1194
Bme18I GGWCC 1 cut(s) 1151
BmeT110I CYCGRG 1 cut(s) 1560
BmgT120I GGNCC 2 cut(s) 866, 1151
BmiI GGNNCC 4 cut(s) 58, 478, 688, 1153
BmrFI CCNGG 5 cut(s) 306, 327, 810, 874, 1194
BmrI ACTGGG 1 cut(s) 1612
BmsI GCATC 4 cut(s) 113, 783, 1457, 1486
BmuI ACTGGG 1 cut(s) 1612
BpiI GAAGAC 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 1314
BpuEI CTTGAG 1 cut(s) 1621
BpuMI CCSGG 2 cut(s) 306, 874
BsaJI CCNNGG 7 cut(s) 428, 480, 808, 873, 1192, 1435, 1491
Bsc4I CCNNNNNNNGG 3 cut(s) 874, 970, 1492
Bse1I ACTGG 4 cut(s) 364, 534, 1295, 1607
BseBI CCWGG 3 cut(s) 327, 810, 1194
BseDI CCNNGG 7 cut(s) 428, 480, 808, 873, 1192, 1435, 1491
BseGI GGATG 4 cut(s) 104, 989, 1448, 1501
BseLI CCNNNNNNNGG 3 cut(s) 874, 970, 1492
BseMII CTCAG 2 cut(s) 87, 1328
BseNI ACTGG 4 cut(s) 364, 534, 1295, 1607
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 26, 355, 692
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 867, 1125, 1385
BshNI GGYRCC 2 cut(s) 56, 476
BsiHKCI CYCGRG 1 cut(s) 1560
BsiSI CCGG 2 cut(s) 305, 873
BslFI GGGAC 3 cut(s) 402, 1137, 1174
BslI CCNNNNNNNGG 3 cut(s) 874, 970, 1492
BsmAI GTCTC 2 cut(s) 602, 1277
BsmFI GGGAC 3 cut(s) 402, 1137, 1174
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 3 cut(s) 867, 1125, 1385
BsoBI CYCGRG 1 cut(s) 1560
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
BspANI GGCC 3 cut(s) 867, 1125, 1385
BspCNI CTCAG 2 cut(s) 88, 1327
BspFNI CGCG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 4 cut(s) 58, 478, 688, 1153
BspMAI CTGCAG 2 cut(s) 44, 256
BspMI ACCTGC 2 cut(s) 1259, 1367
BspPI GGATC 5 cut(s) 287, 681, 694, 716, 1211
BspT107I GGYRCC 2 cut(s) 56, 476
BspTI CTTAAG 1 cut(s) 383
BsrI ACTGG 4 cut(s) 364, 534, 1295, 1607
BssECI CCNNGG 7 cut(s) 428, 480, 808, 873, 1192, 1435, 1491
BssMI GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
BssNAI GTATAC 2 cut(s) 518, 933
BssT1I CCWWGG 3 cut(s) 428, 480, 1491
Bst1107I GTATAC 2 cut(s) 518, 933
Bst2UI CCWGG 3 cut(s) 327, 810, 1194
Bst4CI ACNGT 6 cut(s) 77, 200, 613, 623, 1014, 1161
Bst6I CTCTTC 1 cut(s) 1275
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 3 cut(s) 459, 1080, 1515
BstDEI CTNAG 3 cut(s) 96, 321, 1314
BstENI CCTNNNNNAGG 1 cut(s) 968
BstF5I GGATG 4 cut(s) 104, 989, 1448, 1501
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 1546
BstHHI GCGC 4 cut(s) 114, 1268, 1485, 1545
BstKTI GATC 6 cut(s) 295, 689, 711, 1180, 1206, 1480
BstMAI GTCTC 2 cut(s) 602, 1277
BstMBI GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
BstMWI GCNNNNNNNGC 5 cut(s) 26, 210, 1319, 1382, 1391
BstNI CCWGG 3 cut(s) 327, 810, 1194
BstNSI RCATGY 2 cut(s) 1082, 1517
BstSCI CCNGG 5 cut(s) 304, 325, 808, 872, 1192
BstSFI CTRYAG 3 cut(s) 40, 252, 1140
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 26, 355, 692
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BstZ17I GTATAC 2 cut(s) 518, 933
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 3 cut(s) 867, 1125, 1385
BtgZI GCGATG 1 cut(s) 1364
BtsCI GGATG 4 cut(s) 104, 989, 1448, 1501
BtsIMutI CAGTG 5 cut(s) 82, 527, 892, 1107, 1302
BveI ACCTGC 2 cut(s) 1259, 1367
Cac8I GCNNGC 3 cut(s) 459, 1080, 1515
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 1 cut(s) 909
CfoI GCGC 4 cut(s) 114, 1268, 1485, 1545
Cfr13I GGNCC 2 cut(s) 866, 1151
Csp6I GTAC 4 cut(s) 169, 357, 477, 601
CviAII CATG 8 cut(s) 439, 593, 755, 910, 938, 1079, 1387, 1514
CviQI GTAC 4 cut(s) 169, 357, 477, 601
DdeI CTNAG 3 cut(s) 96, 321, 1314
DpnI GATC 6 cut(s) 294, 688, 710, 1179, 1205, 1479
DpnII GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
Eco130I CCWWGG 3 cut(s) 428, 480, 1491
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 1151
Eco88I CYCGRG 1 cut(s) 1560
EcoNI CCTNNNNNAGG 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 3 cut(s) 325, 808, 1192
EcoT14I CCWWGG 3 cut(s) 428, 480, 1491
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 3 cut(s) 428, 480, 1491
FaeI CATG 8 cut(s) 442, 596, 758, 913, 941, 1082, 1390, 1517
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 3 cut(s) 402, 1137, 1174
FatI CATG 8 cut(s) 438, 592, 754, 909, 937, 1078, 1386, 1513
FauNDI CATATG 1 cut(s) 1120
FblI GTMKAC 4 cut(s) 517, 932, 1139, 1425
Fnu4HI GCNGC 3 cut(s) 40, 369, 681
FokI GGATG 4 cut(s) 91, 976, 1435, 1508
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 3 cut(s) 40, 369, 681
FspBI CTAG 4 cut(s) 21, 30, 311, 392
FspI TGCGCA 1 cut(s) 1267
GlaI GCGC 4 cut(s) 113, 1267, 1484, 1544
GluI GCNGC 3 cut(s) 40, 369, 681
GsaI CCCAGC 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 1546
HaeIII GGCC 3 cut(s) 867, 1125, 1385
HapII CCGG 2 cut(s) 305, 873
HhaI GCGC 4 cut(s) 114, 1268, 1485, 1545
Hin1II CATG 8 cut(s) 442, 596, 758, 913, 941, 1082, 1390, 1517
Hin6I GCGC 4 cut(s) 112, 1266, 1483, 1543
HinP1I GCGC 4 cut(s) 112, 1266, 1483, 1543
HincII GTYRAC 1 cut(s) 1600
HindII GTYRAC 1 cut(s) 1600
HindIII AAGCTT 2 cut(s) 668, 776
HinfI GANTC 7 cut(s) 193, 272, 378, 433, 648, 751, 982
HpaII CCGG 2 cut(s) 305, 873
HphI GGTGA 6 cut(s) 202, 341, 417, 902, 952, 1019
Hpy166II GTNNAC 6 cut(s) 518, 601, 933, 1140, 1426, 1600
Hpy188I TCNGA 8 cut(s) 97, 277, 691, 743, 802, 820, 860, 1439
Hpy188III TCNNGA 6 cut(s) 51, 311, 784, 910, 1277, 1638
Hpy8I GTNNAC 6 cut(s) 518, 601, 933, 1140, 1426, 1600
Hpy99I CGWCG 1 cut(s) 1001
HpyAV CCTTC 6 cut(s) 39, 141, 1003, 1194, 1325, 1363
HpyCH4III ACNGT 6 cut(s) 77, 200, 613, 623, 1014, 1161
HpyCH4IV ACGT 2 cut(s) 142, 999
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 210, 1319, 1382, 1391
HpyF3I CTNAG 3 cut(s) 96, 321, 1314
HpySE526I ACGT 2 cut(s) 142, 999
Hsp92II CATG 8 cut(s) 442, 596, 758, 913, 941, 1082, 1390, 1517
HspAI GCGC 4 cut(s) 112, 1266, 1483, 1543
KpnI GGTACC 1 cut(s) 480
Kzo9I GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
LmnI GCTCC 2 cut(s) 101, 210
Lsp1109I GCAGC 3 cut(s) 26, 355, 692
LweI GCATC 4 cut(s) 113, 783, 1457, 1486
MaeI CTAG 4 cut(s) 21, 30, 311, 392
MaeII ACGT 2 cut(s) 142, 999
MaeIII GTNAC 5 cut(s) 68, 143, 718, 958, 1460
MalI GATC 6 cut(s) 294, 688, 710, 1179, 1205, 1479
MboI GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
MboII GAAGA 6 cut(s) 436, 836, 1099, 1172, 1253, 1292
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 5 cut(s) 160, 242, 485, 893, 1337
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 3 cut(s) 982, 1435, 1553
Mph1103I ATGCAT 1 cut(s) 733
MroXI GAANNNNTTC 1 cut(s) 1583
MseI TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
MslI CAYNNNNRTG 2 cut(s) 75, 1616
MspA1I CMGCKG 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 2 cut(s) 305, 873
MspR9I CCNGG 5 cut(s) 306, 327, 810, 874, 1194
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 3 cut(s) 327, 810, 1194
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 5 cut(s) 26, 210, 1319, 1382, 1391
NciI CCSGG 2 cut(s) 306, 874
NdeI CATATG 1 cut(s) 1120
NdeII GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
NlaIII CATG 8 cut(s) 442, 596, 758, 913, 941, 1082, 1390, 1517
NlaIV GGNNCC 4 cut(s) 58, 478, 688, 1153
NmuCI GTSAC 3 cut(s) 68, 718, 958
NsbI TGCGCA 1 cut(s) 1267
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 2 cut(s) 1082, 1517
OliI CACNNNNGTG 2 cut(s) 75, 1616
PaeI GCATGC 2 cut(s) 1082, 1517
PagI TCATGA 1 cut(s) 909
PctI GAATGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 1583
PfeI GAWTC 6 cut(s) 193, 378, 433, 648, 751, 982
PkrI GCNGC 3 cut(s) 41, 370, 682
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp1406I AACGTT 1 cut(s) 142
Psp6I CCWGG 3 cut(s) 325, 808, 1192
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 3 cut(s) 325, 808, 1192
PspN4I GGNNCC 4 cut(s) 58, 478, 688, 1153
PspPI GGNCC 2 cut(s) 866, 1151
PstI CTGCAG 2 cut(s) 44, 256
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 4 cut(s) 170, 358, 478, 602
RsaNI GTAC 4 cut(s) 169, 357, 477, 601
RseI CAYNNNNRTG 2 cut(s) 75, 1616
SaqAI TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
SatI GCNGC 3 cut(s) 40, 369, 681
Sau3AI GATC 6 cut(s) 292, 686, 708, 1177, 1203, 1477
Sau96I GGNCC 2 cut(s) 866, 1151
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 5 cut(s) 306, 327, 810, 874, 1194
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 4 cut(s) 113, 783, 1457, 1486
SfcI CTRYAG 3 cut(s) 40, 252, 1140
SinI GGWCC 1 cut(s) 1151
SmiMI CAYNNNNRTG 2 cut(s) 75, 1616
SmlI CTYRAG 2 cut(s) 383, 1636
SmoI CTYRAG 2 cut(s) 383, 1636
SphI GCATGC 2 cut(s) 1082, 1517
Sse9I AATT 5 cut(s) 160, 242, 485, 893, 1337
SspI AATATT 1 cut(s) 119
SspMI CTAG 4 cut(s) 21, 30, 311, 392
StyD4I CCNGG 5 cut(s) 304, 325, 808, 872, 1192
StyI CCWWGG 3 cut(s) 428, 480, 1491
TaaI ACNGT 6 cut(s) 77, 200, 613, 623, 1014, 1161
TaiI ACGT 2 cut(s) 145, 1002
TaqI TCGA 2 cut(s) 376, 996
TasI AATT 5 cut(s) 160, 242, 485, 893, 1337
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 6 cut(s) 193, 378, 433, 648, 751, 982
Tru1I TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
Tru9I TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
TscAI CASTG 5 cut(s) 82, 534, 892, 1114, 1302
TseFI GTSAC 3 cut(s) 68, 718, 958
TseI GCWGC 3 cut(s) 39, 368, 680
Tsp45I GTSAC 3 cut(s) 68, 718, 958
TspDTI ATGAA 4 cut(s) 651, 895, 926, 1525
TspGWI ACGGA 3 cut(s) 479, 911, 1441
TspRI CASTG 5 cut(s) 82, 534, 892, 1114, 1302
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 1151
XagI CCTNNNNNAGG 1 cut(s) 968
XapI RAATTY 2 cut(s) 485, 1337
XbaI TCTAGA 1 cut(s) 310
XceI RCATGY 2 cut(s) 1082, 1517
XmiI GTMKAC 4 cut(s) 517, 932, 1139, 1425
XmnI GAANNNNTTC 1 cut(s) 1583
XspI CTAG 4 cut(s) 21, 30, 311, 392
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.