Rh5BG051100

Internal alternative NAD(P)H-ubiquinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002966
Physical Location & Seq
Forward (+)
4045203 .. 4049948
4746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG051100.1

Sequence Viewer

Length: 1527 bp
ATGGCTTTAGAAAGGATTGCTAGGACTGCTAGGAGTAGCTGCAGAAGGTCAGGAGGTGCCTTTGGTGGTCACAAAAGTGAAAAGGATATGTTCTCTGAGGGAGCATCCACCCGCAAATATTGTTCCTTACCTTCACTTGAACGTGACACCAGAAATAGAAATTTTTCGTACCTTTCCAGCATTCCAAAGGTGAATCACAGTAGCTTTTGGAGCAGGGGAATAAGGACAACCCCAAGTTATCAATTTCCATCTGCAGAAAGGATTGTTGAGGAGTCTGATTTGGAGTGTCATGATCCCAAGTATCCGGGTCTAGAGGCAACTAAGCCAGGTGAAAAGCCAAGAGTGGTTGTTCTTGGTACTGGCTGGGCTGCCTGTCGATTCCTTAAGGGATTAGACACAAAGATTTATGATGTTGTTTGCATATCACCAAGGAATCACATGGTCTTCACTCCTTTGCTTGCTTCAACTTGTGTTGGTACCTTGGAATTCCGTTCAGTTGTTGAACCTGTCAGTCGTATACAATCTGCACTGGCAACAAATCCCAACTCATACTTCTATCTGGCTTCCTGCTTTGGCATTGACACAAACAAACATGAGGTGTACTGCGAGACAGTCAGCAACGGTGGTTTGCCTAATGAACCTTACAGATTCAAAGTTGCCTATGACAAGCTTGTCATAGCAGCTGGATCCGAGCCCTTGACATTTGGGATCAAAGGTGTGACAGAAAATGCATTTTTCCTCCGAGAAGTGAATCATGCCCAAGAGATTAGAAAGAAGCTTCTCTTGAACTTGATGCTCTCGGACAACCCAGGCATATCAGAGGAAGAAAGGAAACGCCTCTTGCATTGTGTTGTTATCGGAGGTGGCCCTACCGGGGTGGAGTTCAGTGGTGAATTGAGTGATTTCATCATGAAAGATGTCCGTGAAAGGTATACTCATGTTAAGGACTACATCAAAGTCACCCTCATTGAGGCTAATGAGATTCTGTCATCCTTCGACGTTGGATTAAGGCAGTATGCAACCAATCACCTGACCAAGTGTGGTGTTAGCCTTATGCGAGGTGTTGTGAAAGAGGTGCATGCAAAGAAGATAGTTCTTAACAATGGCACTGATGTTCCATATGGCCTATTGGTCTGGTCTACAGGCGTTGGTCCCTCACAGTTTGTGAAATCACTTGATCTTCCCAAGTCCCCTGGTGGAAGGATTGGTGTTGATGGGTGGTTGAGAGTTCCTGCTGTGGAAGATGTGTTTGCACTTGGAGATTGCGCAGGTTTTCTTGAAGAGACAGGGAAGCCAGTGCTTCCAGCTTTAGCTCAGGTGGCAGAAAGGGAAGGAAAATTTCTGGTGGCGTTGTTTAACAGGATTGGGAAGGAGGCAGGTAAGGCCATGAGTGCAAAAAATATCTATCTGGGAGAGCCTTTCGTCTACCAACACCTCGGAAGTATGGCATCCGTTGGAGGTTACAAGGCACTTGTTGATCTGCGCCAATCCAAGGTTAGTTTTCATCAAAACTTTTACTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pyr_redox_2

Protein Analysis

508

Amino Acids

56.02

Weight (kDa)

8.86

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 114 - 445 1.3e-48 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
Acc16I TGCGCA 1 cut(s) 1267
Acc36I ACCTGC 2 cut(s) 1259, 1367
Acc65I GGTACC 1 cut(s) 476
AccB1I GGYRCC 2 cut(s) 56, 476
AccI GTMKAC 4 cut(s) 517, 932, 1139, 1425
AciI CCGC 1 cut(s) 112
AclWI GGATC 4 cut(s) 287, 681, 694, 716
AcsI RAATTY 3 cut(s) 160, 485, 1337
AfaI GTAC 4 cut(s) 170, 358, 478, 602
AfiI CCNNNNNNNGG 3 cut(s) 874, 970, 1492
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 6 cut(s) 140, 465, 503, 652, 787, 1280
AjnI CCWGG 3 cut(s) 325, 808, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 7 cut(s) 39, 204, 670, 683, 778, 1307, 1313
AluI AGCT 7 cut(s) 39, 204, 670, 683, 778, 1307, 1313
Alw26I GTCTC 2 cut(s) 602, 1277
AlwI GGATC 4 cut(s) 287, 681, 694, 716
AoxI GGCC 3 cut(s) 865, 1123, 1383
ApeKI GCWGC 3 cut(s) 39, 368, 680
ApoI RAATTY 3 cut(s) 160, 485, 1337
Asp700I GAANNNNTTC 1 cut(s) 163
Asp718I GGTACC 1 cut(s) 476
AspLEI GCGC 2 cut(s) 1268, 1485
AspS9I GGNCC 2 cut(s) 866, 1151
AsuC2I CCSGG 2 cut(s) 306, 874
AsuHPI GGTGA 6 cut(s) 202, 341, 417, 902, 952, 1019
AvaII GGWCC 1 cut(s) 1151
BamHI GGATCC 1 cut(s) 686
BanI GGYRCC 2 cut(s) 56, 476
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 3 cut(s) 26, 355, 692
BccI CCATC 2 cut(s) 256, 1208
BciT130I CCWGG 3 cut(s) 327, 810, 1194
BciVI GTATCC 1 cut(s) 312
BcnI CCSGG 2 cut(s) 306, 874
BcoDI GTCTC 2 cut(s) 602, 1277
BfaI CTAG 3 cut(s) 21, 30, 311
BfmI CTRYAG 3 cut(s) 40, 252, 1140
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 2 cut(s) 1259, 1367
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 3 cut(s) 40, 369, 681
BlsI GCNGC 3 cut(s) 41, 370, 682
Bme1390I CCNGG 5 cut(s) 306, 327, 810, 874, 1194
Bme18I GGWCC 1 cut(s) 1151
BmgT120I GGNCC 2 cut(s) 866, 1151
BmiI GGNNCC 4 cut(s) 58, 478, 688, 1153
BmrFI CCNGG 5 cut(s) 306, 327, 810, 874, 1194
BmsI GCATC 3 cut(s) 113, 783, 1457
BpiI GAAGAC 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 1314
BpuMI CCSGG 2 cut(s) 306, 874
BsaJI CCNNGG 7 cut(s) 428, 480, 808, 873, 1192, 1435, 1491
Bsc4I CCNNNNNNNGG 3 cut(s) 874, 970, 1492
Bse1I ACTGG 3 cut(s) 364, 534, 1295
BseBI CCWGG 3 cut(s) 327, 810, 1194
BseDI CCNNGG 7 cut(s) 428, 480, 808, 873, 1192, 1435, 1491
BseGI GGATG 3 cut(s) 104, 989, 1448
BseLI CCNNNNNNNGG 3 cut(s) 874, 970, 1492
BseMII CTCAG 2 cut(s) 87, 1328
BseNI ACTGG 3 cut(s) 364, 534, 1295
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 3 cut(s) 26, 355, 692
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 510
BshFI GGCC 3 cut(s) 867, 1125, 1385
BshNI GGYRCC 2 cut(s) 56, 476
BsiSI CCGG 2 cut(s) 305, 873
BslFI GGGAC 2 cut(s) 1137, 1174
BslI CCNNNNNNNGG 3 cut(s) 874, 970, 1492
BsmAI GTCTC 2 cut(s) 602, 1277
BsmFI GGGAC 2 cut(s) 1137, 1174
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 3 cut(s) 867, 1125, 1385
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 5 cut(s) 292, 686, 708, 1177, 1477
BspACI CCGC 1 cut(s) 112
BspANI GGCC 3 cut(s) 867, 1125, 1385
BspCNI CTCAG 2 cut(s) 88, 1327
BspHI TCATGA 2 cut(s) 289, 909
BspLI GGNNCC 4 cut(s) 58, 478, 688, 1153
BspMAI CTGCAG 2 cut(s) 44, 256
BspMI ACCTGC 2 cut(s) 1259, 1367
BspPI GGATC 4 cut(s) 287, 681, 694, 716
BspT107I GGYRCC 2 cut(s) 56, 476
BspTI CTTAAG 1 cut(s) 383
BsrI ACTGG 3 cut(s) 364, 534, 1295
BssECI CCNNGG 7 cut(s) 428, 480, 808, 873, 1192, 1435, 1491
BssMI GATC 5 cut(s) 292, 686, 708, 1177, 1477
BssNAI GTATAC 2 cut(s) 518, 933
BssT1I CCWWGG 3 cut(s) 428, 480, 1491
Bst1107I GTATAC 2 cut(s) 518, 933
Bst2UI CCWGG 3 cut(s) 327, 810, 1194
Bst4CI ACNGT 4 cut(s) 200, 613, 623, 1161
Bst6I CTCTTC 1 cut(s) 1275
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 459, 1080
BstDEI CTNAG 3 cut(s) 96, 321, 1314
BstENI CCTNNNNNAGG 1 cut(s) 968
BstF5I GGATG 3 cut(s) 104, 989, 1448
BstHHI GCGC 2 cut(s) 1268, 1485
BstKTI GATC 5 cut(s) 295, 689, 711, 1180, 1480
BstMAI GTCTC 2 cut(s) 602, 1277
BstMBI GATC 5 cut(s) 292, 686, 708, 1177, 1477
BstMWI GCNNNNNNNGC 5 cut(s) 26, 210, 1319, 1382, 1391
BstNI CCWGG 3 cut(s) 327, 810, 1194
BstNSI RCATGY 1 cut(s) 1082
BstSCI CCNGG 5 cut(s) 304, 325, 808, 872, 1192
BstSFI CTRYAG 3 cut(s) 40, 252, 1140
BstV1I GCAGC 3 cut(s) 26, 355, 692
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BstZ17I GTATAC 2 cut(s) 518, 933
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 3 cut(s) 867, 1125, 1385
BtsCI GGATG 3 cut(s) 104, 989, 1448
BtsIMutI CAGTG 4 cut(s) 527, 892, 1107, 1302
BveI ACCTGC 2 cut(s) 1259, 1367
Cac8I GCNNGC 2 cut(s) 459, 1080
CciI TCATGA 2 cut(s) 289, 909
CfoI GCGC 2 cut(s) 1268, 1485
Cfr13I GGNCC 2 cut(s) 866, 1151
Csp6I GTAC 4 cut(s) 169, 357, 477, 601
CviAII CATG 8 cut(s) 290, 439, 593, 755, 910, 938, 1079, 1387
CviQI GTAC 4 cut(s) 169, 357, 477, 601
DdeI CTNAG 3 cut(s) 96, 321, 1314
DpnI GATC 5 cut(s) 294, 688, 710, 1179, 1479
DpnII GATC 5 cut(s) 292, 686, 708, 1177, 1477
DrdI GACNNNNNNGTC 1 cut(s) 671
DseDI GACNNNNNNGTC 1 cut(s) 671
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
Eco130I CCWWGG 3 cut(s) 428, 480, 1491
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 1151
EcoNI CCTNNNNNAGG 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 3 cut(s) 325, 808, 1192
EcoT14I CCWWGG 3 cut(s) 428, 480, 1491
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 3 cut(s) 428, 480, 1491
FaeI CATG 8 cut(s) 293, 442, 596, 758, 913, 941, 1082, 1390
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 2 cut(s) 1137, 1174
FatI CATG 8 cut(s) 289, 438, 592, 754, 909, 937, 1078, 1386
FauI CCCGC 1 cut(s) 119
FauNDI CATATG 1 cut(s) 1120
FblI GTMKAC 4 cut(s) 517, 932, 1139, 1425
Fnu4HI GCNGC 3 cut(s) 40, 369, 681
FokI GGATG 3 cut(s) 91, 976, 1435
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 3 cut(s) 40, 369, 681
FspBI CTAG 3 cut(s) 21, 30, 311
FspI TGCGCA 1 cut(s) 1267
GlaI GCGC 2 cut(s) 1267, 1484
GluI GCNGC 3 cut(s) 40, 369, 681
GsaI CCCAGC 1 cut(s) 367
HaeIII GGCC 3 cut(s) 867, 1125, 1385
HapII CCGG 2 cut(s) 305, 873
HhaI GCGC 2 cut(s) 1268, 1485
Hin1II CATG 8 cut(s) 293, 442, 596, 758, 913, 941, 1082, 1390
Hin6I GCGC 2 cut(s) 1266, 1483
HinP1I GCGC 2 cut(s) 1266, 1483
HindIII AAGCTT 2 cut(s) 668, 776
HinfI GANTC 7 cut(s) 193, 272, 378, 433, 648, 751, 982
HpaII CCGG 2 cut(s) 305, 873
HphI GGTGA 6 cut(s) 202, 341, 417, 902, 952, 1019
Hpy166II GTNNAC 5 cut(s) 518, 601, 933, 1140, 1426
Hpy188I TCNGA 8 cut(s) 97, 277, 691, 743, 802, 820, 860, 1439
Hpy188III TCNNGA 7 cut(s) 51, 290, 311, 784, 910, 1277, 1521
Hpy8I GTNNAC 5 cut(s) 518, 601, 933, 1140, 1426
Hpy99I CGWCG 1 cut(s) 1001
HpyAV CCTTC 6 cut(s) 39, 141, 1003, 1194, 1325, 1363
HpyCH4III ACNGT 4 cut(s) 200, 613, 623, 1161
HpyCH4IV ACGT 2 cut(s) 142, 999
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 210, 1319, 1382, 1391
HpyF3I CTNAG 3 cut(s) 96, 321, 1314
HpySE526I ACGT 2 cut(s) 142, 999
Hsp92II CATG 8 cut(s) 293, 442, 596, 758, 913, 941, 1082, 1390
HspAI GCGC 2 cut(s) 1266, 1483
KpnI GGTACC 1 cut(s) 480
Kzo9I GATC 5 cut(s) 292, 686, 708, 1177, 1477
LmnI GCTCC 2 cut(s) 101, 210
Lsp1109I GCAGC 3 cut(s) 26, 355, 692
LweI GCATC 3 cut(s) 113, 783, 1457
MaeI CTAG 3 cut(s) 21, 30, 311
MaeII ACGT 2 cut(s) 142, 999
MaeIII GTNAC 5 cut(s) 68, 143, 718, 958, 1460
MalI GATC 5 cut(s) 294, 688, 710, 1179, 1479
MboI GATC 5 cut(s) 292, 686, 708, 1177, 1477
MboII GAAGA 6 cut(s) 436, 836, 1099, 1172, 1253, 1292
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 5 cut(s) 160, 242, 485, 893, 1337
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 2 cut(s) 982, 1435
Mph1103I ATGCAT 1 cut(s) 733
MroXI GAANNNNTTC 1 cut(s) 163
MseI TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 2 cut(s) 305, 873
MspR9I CCNGG 5 cut(s) 306, 327, 810, 874, 1194
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 3 cut(s) 327, 810, 1194
MwoI GCNNNNNNNGC 5 cut(s) 26, 210, 1319, 1382, 1391
NciI CCSGG 2 cut(s) 306, 874
NdeI CATATG 1 cut(s) 1120
NdeII GATC 5 cut(s) 292, 686, 708, 1177, 1477
NlaIII CATG 8 cut(s) 293, 442, 596, 758, 913, 941, 1082, 1390
NlaIV GGNNCC 4 cut(s) 58, 478, 688, 1153
NmuCI GTSAC 4 cut(s) 68, 143, 718, 958
NsbI TGCGCA 1 cut(s) 1267
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 1 cut(s) 1082
OliI CACNNNNGTG 1 cut(s) 75
PaeI GCATGC 1 cut(s) 1082
PagI TCATGA 2 cut(s) 289, 909
PctI GAATGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 6 cut(s) 193, 378, 433, 648, 751, 982
PkrI GCNGC 3 cut(s) 41, 370, 682
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
Psp6I CCWGG 3 cut(s) 325, 808, 1192
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 3 cut(s) 325, 808, 1192
PspN4I GGNNCC 4 cut(s) 58, 478, 688, 1153
PspPI GGNCC 2 cut(s) 866, 1151
PstI CTGCAG 2 cut(s) 44, 256
PsuI RGATCY 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 4 cut(s) 170, 358, 478, 602
RsaNI GTAC 4 cut(s) 169, 357, 477, 601
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
SatI GCNGC 3 cut(s) 40, 369, 681
Sau3AI GATC 5 cut(s) 292, 686, 708, 1177, 1477
Sau96I GGNCC 2 cut(s) 866, 1151
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 5 cut(s) 306, 327, 810, 874, 1194
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 3 cut(s) 113, 783, 1457
SfcI CTRYAG 3 cut(s) 40, 252, 1140
SinI GGWCC 1 cut(s) 1151
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 1082
Sse9I AATT 5 cut(s) 160, 242, 485, 893, 1337
SsiI CCGC 1 cut(s) 112
SspI AATATT 1 cut(s) 119
SspMI CTAG 3 cut(s) 21, 30, 311
StyD4I CCNGG 5 cut(s) 304, 325, 808, 872, 1192
StyI CCWWGG 3 cut(s) 428, 480, 1491
TaaI ACNGT 4 cut(s) 200, 613, 623, 1161
TaiI ACGT 2 cut(s) 145, 1002
TaqI TCGA 2 cut(s) 376, 996
TasI AATT 5 cut(s) 160, 242, 485, 893, 1337
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 6 cut(s) 193, 378, 433, 648, 751, 982
Tru1I TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
Tru9I TTAA 5 cut(s) 384, 942, 1007, 1098, 1356
TscAI CASTG 4 cut(s) 534, 892, 1114, 1302
TseFI GTSAC 4 cut(s) 68, 143, 718, 958
TseI GCWGC 3 cut(s) 39, 368, 680
Tsp45I GTSAC 4 cut(s) 68, 143, 718, 958
TspDTI ATGAA 4 cut(s) 651, 895, 926, 1493
TspGWI ACGGA 3 cut(s) 479, 911, 1441
TspRI CASTG 4 cut(s) 534, 892, 1114, 1302
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 1151
XagI CCTNNNNNAGG 1 cut(s) 968
XapI RAATTY 3 cut(s) 160, 485, 1337
XbaI TCTAGA 1 cut(s) 310
XceI RCATGY 1 cut(s) 1082
XmiI GTMKAC 4 cut(s) 517, 932, 1139, 1425
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 3 cut(s) 21, 30, 311
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.