Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002966

Physical Location & Seq

Genomic Coordinates Forward (+)

55296234 .. 55296749

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0402300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTATCCGATTACCTGCCATTATGCATGCTAAGCAGATTCTCCGGCGAGGAAGTTTGTTGGCTTTTAAAGCAGATTTAATACATGCTGATGTTCCAAAAGGCTTCTTACCGGTGTATGTGGGAGAATGTAGTGAAAAGAAGAGATACATAGTTCCAGTTTCTTTCTTGAGTCAGCCTTCATTTCAAGAGTTCCTGAGTAAGGCAGAGGAAGAATATGGATTCGACCATCCAATGGGTGGACTCACAATTCCTTGCCGAGAACAAACCTTCATTGATCTCACTTCTTGCTTGAAGGGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

101

Amino Acids

11.34

Weight (kDa)

7.74

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	27 - 98	8.7e-21	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07180 AT2G29990
fragaria_vesca	FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g38840
malus_domestica	MD03G1067100.v1.1 MD05G1323500.v1.1 MD10G1301300.v1.1
prunus_persica	Prupe.4G039000_v2.0.a1 Prupe.4G039000_v2.0.a1 Prupe.6G055600_v2.0.a1
pyrus_communis	pycom03g05350 pycom05g29800 pycom10g25410
rosa_chinensis	RchiOBHm_Chr5g0006761 RchiOBHm_Chr5g0070091
rosa_laevigata	RLG00000031427 RLG00000036113
rosa_multiflora	Rmu_sc0001044.1_g000041 Rmu_sc0002367.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011050 Rroxscaffold_1G00069280
rosa_rugosa	Rorug04G0424200 Rorug04G0424300 Rorug05G0402300
rosa_samantha	Rh5AG052200 Rh5AG458700 Rh5BG051100 Rh5BG477300 Rh5CG059700 Rh5CG501000 Rh5DG489400
rosa_wichuraiana	Rw5G005230 Rw5G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	25
AccB7I	CCANNNNNTGG	2 cut(s)	235, 239
AfiI	CCNNNNNNNGG	3 cut(s)	202, 235, 239
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	188, 295
AsiGI	ACCGGT	1 cut(s)	112
BccI	CCATC	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	25
BlpI	GCTNAGC	1 cut(s)	33
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 235, 239
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	202, 235, 239
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	46, 113
BslI	CCNNNNNNNGG	3 cut(s)	202, 235, 239
Bsp143I	GATC	1 cut(s)	277
Bsp1720I	GCTNAGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	112
BssMI	GATC	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	33, 197
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 71
BstNSI	RCATGY	2 cut(s)	32, 89
BtsCI	GGATG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	112
CspAI	ACCGGT	1 cut(s)	112
CviAII	CATG	2 cut(s)	29, 86
CviJI	RGCY	5 cut(s)	5, 65, 105, 178, 301
CviKI_1	RGCY	5 cut(s)	5, 65, 105, 178, 301
DdeI	CTNAG	2 cut(s)	33, 197
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
DraI	TTTAAA	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	30
FaeI	CATG	2 cut(s)	32, 89
FaiI	YATR	6 cut(s)	26, 30, 87, 120, 152, 219
FatI	CATG	2 cut(s)	28, 85
FokI	GGATG	1 cut(s)	216
HapII	CCGG	2 cut(s)	46, 113
Hin1II	CATG	2 cut(s)	32, 89
HinfI	GANTC	4 cut(s)	40, 172, 222, 243
HpaII	CCGG	2 cut(s)	46, 113
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	3 cut(s)	169, 188, 196
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	189, 280, 289
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 71
HpyF3I	CTNAG	2 cut(s)	33, 197
Hsp92II	CATG	2 cut(s)	32, 89
Kzo9I	GATC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	30, 59, 126, 171, 209
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	154, 224
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	181, 237
MnlI	CCTC	2 cut(s)	44, 202
Mph1103I	ATGCAT	1 cut(s)	30
MseI	TTAA	2 cut(s)	69, 80
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	2 cut(s)	46, 113
MwoI	GCNNNNNNNGC	2 cut(s)	34, 71
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	32, 89
NmeAIII	GCCGAG	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	2 cut(s)	32, 89
PaeI	GCATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	40, 222
PflMI	CCANNNNNTGG	2 cut(s)	235, 239
PinAI	ACCGGT	1 cut(s)	112
PleI	GAGTC	2 cut(s)	180, 237
PpsI	GAGTC	2 cut(s)	180, 237
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	69, 80
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	181, 237
SetI	ASST	2 cut(s)	19, 272
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	2 cut(s)	40, 222
Tru1I	TTAA	2 cut(s)	69, 80
Tru9I	TTAA	2 cut(s)	69, 80
TspDTI	ATGAA	2 cut(s)	171, 262
Van91I	CCANNNNNTGG	2 cut(s)	235, 239
XagI	CCTNNNNNAGG	1 cut(s)	200
XceI	RCATGY	2 cut(s)	32, 89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.