AT1G07473

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014281
Physical Location & Seq
Reverse (-)
2294566 .. 2295489
924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07473.1

Sequence Viewer

Length: 378 bp
ATGGAGAACAGTGTGAACATGTTTGGGAAAAGTGAGTCCCCGAGATCACCCACTAGACTGCAGAAGCAAGCACCCACGGCTCTGCATCTAGGCCTTGTTCCCGAGAACCCCTTCTTACAGCAGTCTTCTGATGTGGTTGGAACGACAGCTATTCCTCTGCTTTCACCTCTTTTTGTGTCTCCAAGTCCGCACTCTTCTCTCTCTAAAGAAGGGGACGATTCCATGTTACCGGTGGGATTAACTGAAAAGAACGGATCTCAGCCGTCAATGGACCAGAAGGAAGGGCCGCAATATTCAGCCAAGGCCGACCATAGCAACCAGATGGCTCTCATGAATATGTTTCAGACCAAGTTCGTGCTTGTAGACCATTCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.57

Weight (kDa)

5.71

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AciI CCGC 2 cut(s) 188, 287
AclWI GGATC 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 18
AgeI ACCGGT 1 cut(s) 229
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 262
Ama87I CYCGRG 2 cut(s) 40, 101
AoxI GGCC 3 cut(s) 91, 284, 303
AsiGI ACCGGT 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 110
AspS9I GGNCC 2 cut(s) 271, 284
AsuHPI GGTGA 2 cut(s) 39, 156
AvaI CYCGRG 2 cut(s) 40, 101
AvaII GGWCC 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 117
BccI CCATC 1 cut(s) 316
BceAI ACGGC 2 cut(s) 93, 247
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 54, 89
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 2 cut(s) 40, 101
BmgT120I GGNCC 2 cut(s) 271, 284
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 75, 300
BsaWI WCCGGW 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 75, 300
BseMII CTCAG 1 cut(s) 272
BshFI GGCC 3 cut(s) 93, 286, 305
BshTI ACCGGT 1 cut(s) 229
BsiHKCI CYCGRG 2 cut(s) 40, 101
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 2 cut(s) 22, 227
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 22, 227
BsnI GGCC 3 cut(s) 93, 286, 305
BsoBI CYCGRG 2 cut(s) 40, 101
Bsp143I GATC 2 cut(s) 44, 254
BspACI CCGC 2 cut(s) 188, 287
BspANI GGCC 3 cut(s) 93, 286, 305
BspCNI CTCAG 1 cut(s) 271
BspHI TCATGA 1 cut(s) 330
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 75, 300
BssMI GATC 2 cut(s) 44, 254
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 11, 375
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 75
BstKTI GATC 2 cut(s) 47, 257
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 44, 254
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 3 cut(s) 93, 286, 305
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 271, 284
CspAI ACCGGT 1 cut(s) 229
CviAII CATG 3 cut(s) 19, 223, 331
CviJI RGCY 8 cut(s) 80, 93, 149, 262, 286, 299, 305, 326
CviKI_1 RGCY 8 cut(s) 80, 93, 149, 262, 286, 299, 305, 326
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 46, 256
DpnII GATC 2 cut(s) 44, 254
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 2 cut(s) 40, 101
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 22, 226, 334
FaiI YATR 5 cut(s) 20, 224, 312, 332, 338
FaqI GGGAC 2 cut(s) 22, 227
FatI CATG 3 cut(s) 18, 222, 330
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 2 cut(s) 54, 89
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 3 cut(s) 93, 286, 305
HapII CCGG 1 cut(s) 230
Hin1II CATG 3 cut(s) 22, 226, 334
HinfI GANTC 2 cut(s) 35, 218
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 39, 156
Hpy166II GTNNAC 2 cut(s) 16, 364
Hpy188I TCNGA 2 cut(s) 130, 345
Hpy188III TCNNGA 2 cut(s) 101, 331
Hpy8I GTNNAC 2 cut(s) 16, 364
HpyAV CCTTC 4 cut(s) 121, 203, 271, 275
HpyCH4III ACNGT 2 cut(s) 11, 375
HpyCH4V TGCA 2 cut(s) 61, 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 3 cut(s) 22, 226, 334
Kzo9I GATC 2 cut(s) 44, 254
LpnPI CCDG 3 cut(s) 243, 287, 332
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 54, 89
MaeIII GTNAC 1 cut(s) 225
MalI GATC 2 cut(s) 46, 256
MboI GATC 2 cut(s) 44, 254
MboII GAAGA 2 cut(s) 117, 186
MflI RGATCY 1 cut(s) 254
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 2 cut(s) 165, 177
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 2 cut(s) 44, 254
NlaIII CATG 3 cut(s) 22, 226, 334
NspI RCATGY 1 cut(s) 22
PagI TCATGA 1 cut(s) 330
PceI AGGCCT 1 cut(s) 93
PciI ACATGT 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 218
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PscI ACATGT 1 cut(s) 18
PspPI GGNCC 2 cut(s) 271, 284
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 44, 254
Sau96I GGNCC 2 cut(s) 271, 284
SchI GAGTC 1 cut(s) 44
SetI ASST 2 cut(s) 151, 169
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 59
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 335
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 2 cut(s) 188, 287
SspI AATATT 1 cut(s) 293
SspMI CTAG 2 cut(s) 54, 89
StuI AGGCCT 1 cut(s) 93
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 11, 375
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 271
XceI RCATGY 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 54, 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.