Rh5AG435900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014281
Physical Location & Seq
Forward (+)
74918278 .. 74919387
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG435900.1

Sequence Viewer

Length: 504 bp
ATGTATACCCTTTTGGTTAACTTGCATATATACCCTTTCAAAACCTCTACAAGCAAGCCAAGTGAGGGATCGAAAACTGAACAAAATTTTGAAGAGCCATTTCCATTGAAATCATACCAGGTTTATTTAACAATGGAGGTTCACAATGCATGCAACATCAAAGCGAAAGAAGGGAGGCTCTCAAGTAGGCTACAAGAGCAAGCGCCGGCATCTCTTCATCTTGATCAAATTACAAGCACTGCCCCAGCAAACCCTTTTTCGGATATTCCCAATGCAATCCCATTACTTTCTCCAGTAGTCATTCGATCCCCGGAGTCAATGGCAGAGAAAATGGAGAAAGATTGTGACCAAGGCATGAGTAGAAGAAGGAATATTACTGCAACAGAATCACCCTTTCAGAGTGGAGCTGGATGGCAGCATCCGGCTGTGTCTGCTTTCGCGGATCCCTCGTCGTTGCTTACTGTCTTTCAATCTCAATGCATGATCACAAACCACGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.51

Weight (kDa)

5.95

Isoelectric Point (pI)

84.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 440
AciI CCGC 1 cut(s) 440
AclWI GGATC 4 cut(s) 76, 300, 437, 450
AcsI RAATTY 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 65, 259
AgsI TTSAA 4 cut(s) 40, 92, 109, 470
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
AlwI GGATC 4 cut(s) 76, 300, 437, 450
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 1 cut(s) 85
AspLEI GCGC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 381
BamHI GGATCC 1 cut(s) 442
BarI GAAGNNNNNNTAC 2 cut(s) 358, 390
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 405
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 2 cut(s) 223, 483
BcnI CCSGG 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 2 cut(s) 119, 311
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 2 cut(s) 119, 311
BmsI GCATC 2 cut(s) 218, 427
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 311
BsaJI CCNNGG 2 cut(s) 309, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 259
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 309, 349
BseGI GGATG 2 cut(s) 416, 418
BseLI CCNNNNNNNGG 2 cut(s) 65, 259
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 427
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 440
BsiSI CCGG 3 cut(s) 206, 311, 422
BslI CCNNNNNNNGG 2 cut(s) 65, 259
Bsp143I GATC 5 cut(s) 68, 223, 305, 442, 483
BspACI CCGC 1 cut(s) 440
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 4 cut(s) 76, 300, 437, 450
BspQI GCTCTTC 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 309, 349
BssMI GATC 5 cut(s) 68, 223, 305, 442, 483
BssNAI GTATAC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 349
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 2 cut(s) 87, 219
BstC8I GCNNGC 4 cut(s) 56, 151, 201, 207
BstF5I GGATG 2 cut(s) 416, 418
BstFNI CGCG 1 cut(s) 440
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 5 cut(s) 71, 226, 308, 445, 486
BstMBI GATC 5 cut(s) 68, 223, 305, 442, 483
BstMWI GCNNNNNNNGC 2 cut(s) 196, 431
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 117, 309
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BstZ17I GTATAC 1 cut(s) 6
BtsCI GGATG 2 cut(s) 416, 418
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 4 cut(s) 56, 151, 201, 207
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 205
CsiI ACCWGGT 1 cut(s) 117
CviAII CATG 3 cut(s) 150, 355, 481
CviJI RGCY 6 cut(s) 58, 97, 178, 190, 407, 425
CviKI_1 RGCY 6 cut(s) 58, 97, 178, 190, 407, 425
DpnI GATC 5 cut(s) 70, 225, 307, 444, 485
DpnII GATC 5 cut(s) 68, 223, 305, 442, 483
Eam1104I CTCTTC 2 cut(s) 87, 219
EarI CTCTTC 2 cut(s) 87, 219
Eco130I CCWWGG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 349
EcoT22I ATGCAT 2 cut(s) 151, 482
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 3 cut(s) 153, 358, 484
FaiI YATR 8 cut(s) 6, 27, 29, 31, 115, 151, 356, 482
FatI CATG 3 cut(s) 149, 354, 480
FbaI TGATCA 2 cut(s) 223, 483
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 2 cut(s) 405, 423
Fsp4HI GCNGC 1 cut(s) 416
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 416
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 206
HapII CCGG 3 cut(s) 206, 311, 422
HhaI GCGC 1 cut(s) 205
Hin1II CATG 3 cut(s) 153, 358, 484
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 2 cut(s) 314, 386
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 3 cut(s) 206, 311, 422
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 3 cut(s) 6, 19, 142
Hpy188I TCNGA 2 cut(s) 262, 399
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 3 cut(s) 6, 19, 142
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 2 cut(s) 164, 360
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4V TGCA 6 cut(s) 25, 149, 153, 275, 380, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 431
Hsp92II CATG 3 cut(s) 153, 358, 484
HspAI GCGC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Ksp22I TGATCA 2 cut(s) 223, 483
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 5 cut(s) 68, 223, 305, 442, 483
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 8 cut(s) 104, 131, 219, 258, 306, 324, 393, 435
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 2 cut(s) 218, 427
MabI ACCWGGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 344
MalI GATC 5 cut(s) 70, 225, 307, 444, 485
MboI GATC 5 cut(s) 68, 223, 305, 442, 483
MboII GAAGA 3 cut(s) 104, 206, 375
MflI RGATCY 1 cut(s) 442
MluCI AATT 2 cut(s) 85, 228
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 5 cut(s) 55, 58, 130, 168, 457
Mph1103I ATGCAT 2 cut(s) 151, 482
MroNI GCCGGC 1 cut(s) 205
MseI TTAA 2 cut(s) 18, 128
MspI CCGG 3 cut(s) 206, 311, 422
MspR9I CCNGG 2 cut(s) 119, 311
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 2 cut(s) 196, 431
NaeI GCCGGC 1 cut(s) 207
NciI CCSGG 1 cut(s) 311
NdeII GATC 5 cut(s) 68, 223, 305, 442, 483
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 3 cut(s) 153, 358, 484
NlaIV GGNNCC 1 cut(s) 444
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 2 cut(s) 151, 482
NspI RCATGY 1 cut(s) 153
PaeI GCATGC 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 444
PsuI RGATCY 1 cut(s) 442
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 18, 128
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 5 cut(s) 68, 223, 305, 442, 483
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 2 cut(s) 119, 311
SetI ASST 4 cut(s) 47, 123, 141, 409
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 2 cut(s) 218, 427
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SphI GCATGC 1 cut(s) 153
Sse9I AATT 2 cut(s) 85, 228
SsiI CCGC 1 cut(s) 440
SspI AATATT 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 117, 309
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 71, 304
TasI AATT 2 cut(s) 85, 228
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 18, 128
Tru9I TTAA 2 cut(s) 18, 128
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 5
Zsp2I ATGCAT 2 cut(s) 151, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.