Rh5DG467300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0014281
Physical Location & Seq
Forward (+)
74177926 .. 74178300
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG467300.1

Sequence Viewer

Length: 375 bp
ATGGAGGTTCACGATGCATGCAACATCAAAGCGAAAGAAGGGAGGCTCTCAAGTAGGCTACAAGAGCGAGCGCCGGCATCTCTTCATCTTGATCAAATTACAAGCACTGCCCCAGCAAACCCTTTTTCGGATACTCCCAATGCAATCCCATTACTTTCTCCAGTAGTCATTCAATCCCCGGAGTCAATGGCAGAGAAAATGGAGAAAGATTGTGACCAAGCAGGCATGAGTAGAAGAAGGAATATTACTGCAACAGAATTACCCTTTCAGAGTGGAGCTGGATGGCAGCATCCGGCTGTGTCTGCTTTCGCGGATCCCTCGTCGTTGCTTACTGTCTTTCAATCTCAATGCATGATCACAAACCACGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.46

Weight (kDa)

5.5

Isoelectric Point (pI)

87.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 311
AciI CCGC 1 cut(s) 311
AclWI GGATC 2 cut(s) 308, 321
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 173, 341
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwI GGATC 2 cut(s) 308, 321
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 179
BamHI GGATCC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 276
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 2 cut(s) 91, 354
BcnI CCSGG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 74
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 3 cut(s) 4, 86, 298
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 287, 289
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 311
BsiSI CCGG 3 cut(s) 74, 179, 293
BslI CCNNNNNNNGG 1 cut(s) 127
Bsp143I GATC 3 cut(s) 91, 313, 354
BspACI CCGC 1 cut(s) 311
BspFNI CGCG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 2 cut(s) 308, 321
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 3 cut(s) 91, 313, 354
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 4 cut(s) 19, 69, 75, 223
BstF5I GGATG 2 cut(s) 287, 289
BstFNI CGCG 1 cut(s) 311
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 3 cut(s) 94, 316, 357
BstMBI GATC 3 cut(s) 91, 313, 354
BstMWI GCNNNNNNNGC 2 cut(s) 64, 302
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuI GTATCC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 287, 289
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 4 cut(s) 19, 69, 75, 223
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 73
CviAII CATG 3 cut(s) 18, 226, 352
CviJI RGCY 4 cut(s) 46, 58, 278, 296
CviKI_1 RGCY 4 cut(s) 46, 58, 278, 296
DpnI GATC 3 cut(s) 93, 315, 356
DpnII GATC 3 cut(s) 91, 313, 354
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EcoT22I ATGCAT 2 cut(s) 19, 353
FaeI CATG 3 cut(s) 21, 229, 355
FaiI YATR 3 cut(s) 19, 227, 353
FatI CATG 3 cut(s) 17, 225, 351
FbaI TGATCA 2 cut(s) 91, 354
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 2 cut(s) 276, 294
Fsp4HI GCNGC 1 cut(s) 287
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 287
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 74
HapII CCGG 3 cut(s) 74, 179, 293
HhaI GCGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 21, 229, 355
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 74, 179, 293
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 130, 270
Hpy188III TCNNGA 2 cut(s) 11, 89
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 32, 231
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 5 cut(s) 17, 21, 143, 251, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 302
Hsp92II CATG 3 cut(s) 21, 229, 355
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 91, 354
Kzo9I GATC 3 cut(s) 91, 313, 354
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 7 cut(s) 87, 126, 174, 192, 207, 264, 306
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 3 cut(s) 4, 86, 298
MaeIII GTNAC 1 cut(s) 212
MalI GATC 3 cut(s) 93, 315, 356
MboI GATC 3 cut(s) 91, 313, 354
MboII GAAGA 2 cut(s) 74, 246
MflI RGATCY 1 cut(s) 313
MluCI AATT 2 cut(s) 96, 257
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 2 cut(s) 36, 328
Mph1103I ATGCAT 2 cut(s) 19, 353
MroNI GCCGGC 1 cut(s) 73
MspI CCGG 3 cut(s) 74, 179, 293
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 64, 302
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 179
NdeII GATC 3 cut(s) 91, 313, 354
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 3 cut(s) 21, 229, 355
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 19, 353
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 313
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 91, 313, 354
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 179
SetI ASST 2 cut(s) 9, 280
SfaNI GCATC 3 cut(s) 4, 86, 298
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SphI GCATGC 1 cut(s) 21
Sse9I AATT 2 cut(s) 96, 257
SsiI CCGC 1 cut(s) 311
SspI AATATT 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 334
TasI AATT 2 cut(s) 96, 257
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 112
XceI RCATGY 1 cut(s) 21
Zsp2I ATGCAT 2 cut(s) 19, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.