RchiOBHm_Chr5g0066341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014281
Physical Location & Seq
Forward (+)
72437764 .. 72438135
372 bp
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UTR
Exon/CDS
Intron
PRQ34211

Sequence Viewer

Length: 372 bp
ATGGAGGTTCACAATGCATGCAACATCAAAGCGAAAGAAGGGAGGCTCTCAAGTAGGCTACAAGAGCGAGCGCCGGCATCTCTTCATCTTGATCAAATTACAAGCACTGCCCCAGCAAACCCTTTTTCGGATACTCCCAATGCAATCCCATTACTTTCTCCAGTAGTCATTCGATCCCCGGAGTCAATGGCAGAGAAAATGGAGAAAGATTGTGACCAAGGCATGAGTAGAAGAAGGAATATTACTGCAACAGAATCACCCTTTCAGAGTGGAGCTGGATGGCAGCATCCGGCTGTGTCTGCTTTCGCGGATCCCTCGTCGTTGCTTACTGTCTTTCAATCTCAATGCATGATCACAAACCACGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.39

Weight (kDa)

6.06

Isoelectric Point (pI)

93.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 308
AciI CCGC 1 cut(s) 308
AclWI GGATC 3 cut(s) 168, 305, 318
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 3 cut(s) 168, 305, 318
ApeKI GCWGC 1 cut(s) 283
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 249
BamHI GGATCC 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 273
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 2 cut(s) 91, 351
BcnI CCSGG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 74
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 86, 295
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 177, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 177, 217
BseGI GGATG 2 cut(s) 284, 286
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 308
BsiSI CCGG 3 cut(s) 74, 179, 290
BslI CCNNNNNNNGG 1 cut(s) 127
Bsp143I GATC 4 cut(s) 91, 173, 310, 351
BspACI CCGC 1 cut(s) 308
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 3 cut(s) 168, 305, 318
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 177, 217
BssMI GATC 4 cut(s) 91, 173, 310, 351
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 19, 69, 75
BstF5I GGATG 2 cut(s) 284, 286
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 94, 176, 313, 354
BstMBI GATC 4 cut(s) 91, 173, 310, 351
BstMWI GCNNNNNNNGC 2 cut(s) 64, 299
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 284, 286
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 19, 69, 75
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 73
CviAII CATG 3 cut(s) 18, 223, 349
CviJI RGCY 4 cut(s) 46, 58, 275, 293
CviKI_1 RGCY 4 cut(s) 46, 58, 275, 293
DpnI GATC 4 cut(s) 93, 175, 312, 353
DpnII GATC 4 cut(s) 91, 173, 310, 351
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 2 cut(s) 19, 350
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 21, 226, 352
FaiI YATR 3 cut(s) 19, 224, 350
FatI CATG 3 cut(s) 17, 222, 348
FbaI TGATCA 2 cut(s) 91, 351
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 2 cut(s) 273, 291
Fsp4HI GCNGC 1 cut(s) 284
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 74
HapII CCGG 3 cut(s) 74, 179, 290
HhaI GCGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 21, 226, 352
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 182, 254
HpaII CCGG 3 cut(s) 74, 179, 290
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 130, 267
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 32, 228
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 5 cut(s) 17, 21, 143, 248, 348
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 299
Hsp92II CATG 3 cut(s) 21, 226, 352
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 91, 351
Kzo9I GATC 4 cut(s) 91, 173, 310, 351
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 6 cut(s) 87, 126, 174, 192, 261, 303
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 86, 295
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 93, 175, 312, 353
MboI GATC 4 cut(s) 91, 173, 310, 351
MboII GAAGA 2 cut(s) 74, 243
MflI RGATCY 1 cut(s) 310
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 2 cut(s) 36, 325
Mph1103I ATGCAT 2 cut(s) 19, 350
MroNI GCCGGC 1 cut(s) 73
MspI CCGG 3 cut(s) 74, 179, 290
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 64, 299
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 179
NdeII GATC 4 cut(s) 91, 173, 310, 351
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 3 cut(s) 21, 226, 352
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 19, 350
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 310
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 4 cut(s) 91, 173, 310, 351
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 179
SetI ASST 2 cut(s) 9, 277
SfaNI GCATC 2 cut(s) 86, 295
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SphI GCATGC 1 cut(s) 21
Sse9I AATT 1 cut(s) 96
SsiI CCGC 1 cut(s) 308
SspI AATATT 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 96
TfiI GAWTC 1 cut(s) 254
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 283
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 112
XceI RCATGY 1 cut(s) 21
Zsp2I ATGCAT 2 cut(s) 19, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.