AT1G07476

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014281
Physical Location & Seq
Forward (+)
2295553 .. 2296497
945 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07476.1

Sequence Viewer

Length: 549 bp
ATGACCGTTTCTTTTGCGTCCTCATTGACGACAACACACACAAACCTCTCTCCCTTTTTTTCTCCTCTTCACAACACTCTTTTCTTGATTTTTATACGCATTGGCTCAATTTTGAGTCTGAATCTCGTGATGGAGAAGAGTGTCATCATGTTTGGGAAAAGCGAGTCCCCGAGATTACCGACTAGGCTGCAGAGGCAAGCTCCCGCGGCTCTGAATCTTGGTCGTGTTCCCGAGAATCCCTTTCTGCAGCAGTCTGGTGATGAGGTTGCAGGTGCACCTATTCCTCTGCTTTCACCTCTCTTTGTGTCTCCAAATTCGCACTCTTCTCTTCCTAGAGAAGGGCAAGTAAATCCAAACTCGCAAGCTTCTCCCACTAGAGAAGGGCACGATTTTACGTTTCCGGTGAGTCTTACTGAAAAGAAAGGATCTCAGCCTTCGATGGACCACAAAATAGAGTGGCAACATTCGGCTAAGGGCGACCACAGTGACCAGATGAGTCTCTTAAATATGTTTCAGACCAAGTTCCTGCTTGTAGATCATCCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.11

Weight (kDa)

7.11

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 260
AccII CGCG 1 cut(s) 206
AciI CCGC 2 cut(s) 204, 206
AclWI GGATC 1 cut(s) 433
AcsI RAATTY 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 338
AluBI AGCT 2 cut(s) 200, 365
AluI AGCT 2 cut(s) 200, 365
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 312, 503
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 2 cut(s) 169, 230
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 187, 247
ApoI RAATTY 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 442
AsuHPI GGTGA 3 cut(s) 269, 285, 415
AvaI CYCGRG 2 cut(s) 169, 230
AvaII GGWCC 1 cut(s) 442
BaeGI GKGCMC 2 cut(s) 277, 387
BauI CACGAG 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 174, 259
BccI CCATC 2 cut(s) 124, 433
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BcoDI GTCTC 2 cut(s) 312, 503
BfaI CTAG 3 cut(s) 183, 333, 375
BfmI CTRYAG 2 cut(s) 188, 245
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 3 cut(s) 188, 207, 248
BlsI GCNGC 3 cut(s) 189, 208, 249
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 2 cut(s) 169, 230
BmgT120I GGNCC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 184, 216
Bpu10I CCTNAGC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 1 cut(s) 443
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 277, 387
BseXI GCAGC 2 cut(s) 174, 259
Bsh1236I CGCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 2 cut(s) 169, 230
BsiSI CCGG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 312, 503
BsmFI GGGAC 1 cut(s) 151
BsoBI CYCGRG 2 cut(s) 169, 230
Bsp1286I GDGCHC 2 cut(s) 277, 387
Bsp143I GATC 2 cut(s) 425, 535
BspACI CCGC 2 cut(s) 204, 206
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 206
BspMAI CTGCAG 2 cut(s) 192, 249
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 425, 535
BssSI CACGAG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 125
Bst4CI ACNGT 3 cut(s) 7, 485, 546
Bst6I CTCTTC 4 cut(s) 72, 131, 328, 333
BstC8I GCNNGC 2 cut(s) 198, 363
BstDEI CTNAG 2 cut(s) 429, 471
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 538
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 2 cut(s) 428, 538
BstMAI GTCTC 2 cut(s) 312, 503
BstMBI GATC 2 cut(s) 425, 535
BstMWI GCNNNNNNNGC 2 cut(s) 193, 206
BstSFI CTRYAG 2 cut(s) 188, 245
BstSLI GKGCMC 2 cut(s) 277, 387
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 174, 259
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 198, 363
Cfr13I GGNCC 1 cut(s) 442
Cfr42I CCGCGG 1 cut(s) 207
CseI GACGC 1 cut(s) 6
CviAII CATG 1 cut(s) 148
CviJI RGCY 7 cut(s) 105, 187, 200, 209, 365, 433, 470
CviKI_1 RGCY 7 cut(s) 105, 187, 200, 209, 365, 433, 470
DdeI CTNAG 2 cut(s) 429, 471
DpnI GATC 2 cut(s) 427, 537
DpnII GATC 2 cut(s) 425, 535
Eam1104I CTCTTC 4 cut(s) 72, 131, 328, 333
EarI CTCTTC 4 cut(s) 72, 131, 328, 333
Eco47I GGWCC 1 cut(s) 442
Eco88I CYCGRG 2 cut(s) 169, 230
EcoNI CCTNNNNNAGG 1 cut(s) 336
FaeI CATG 1 cut(s) 151
FaiI YATR 3 cut(s) 95, 149, 509
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 188, 207, 248
FokI GGATG 1 cut(s) 525
Fsp4HI GCNGC 3 cut(s) 188, 207, 248
FspBI CTAG 3 cut(s) 183, 333, 375
GluI GCNGC 3 cut(s) 188, 207, 248
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 7 cut(s) 115, 121, 164, 214, 235, 406, 496
HpaII CCGG 1 cut(s) 401
HphI GGTGA 3 cut(s) 269, 285, 415
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 120, 213, 516
Hpy188III TCNNGA 3 cut(s) 85, 127, 230
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 332, 374, 444
HpyCH4III ACNGT 3 cut(s) 7, 485, 546
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 4 cut(s) 190, 247, 269, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 206
HpyF3I CTNAG 2 cut(s) 429, 471
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 1 cut(s) 151
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 2 cut(s) 425, 535
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 5 cut(s) 240, 255, 414, 503, 539
Lsp1109I GCAGC 2 cut(s) 174, 259
MaeI CTAG 3 cut(s) 183, 333, 375
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 485
MalI GATC 2 cut(s) 427, 537
MboI GATC 2 cut(s) 425, 535
MboII GAAGA 4 cut(s) 59, 148, 315, 320
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 2 cut(s) 277, 387
MluCI AATT 2 cut(s) 108, 313
MlyI GAGTC 4 cut(s) 124, 173, 415, 505
MnlI CCTC 7 cut(s) 31, 56, 75, 186, 256, 294, 306
MseI TTAA 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 401
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 193, 206
NdeII GATC 2 cut(s) 425, 535
NlaIII CATG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 485
PaqCI CACCTGC 1 cut(s) 260
PfeI GAWTC 3 cut(s) 121, 214, 235
PkrI GCNGC 3 cut(s) 189, 208, 249
PleI GAGTC 4 cut(s) 123, 172, 414, 504
PpsI GAGTC 4 cut(s) 123, 172, 414, 504
PspPI GGNCC 1 cut(s) 442
PstI CTGCAG 2 cut(s) 192, 249
PsuI RGATCY 1 cut(s) 425
SacII CCGCGG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 3 cut(s) 188, 207, 248
Sau3AI GATC 2 cut(s) 425, 535
Sau96I GGNCC 1 cut(s) 442
SchI GAGTC 4 cut(s) 124, 173, 415, 505
SduI GDGCHC 2 cut(s) 277, 387
SetI ASST 8 cut(s) 48, 202, 267, 274, 280, 298, 367, 398
SfcI CTRYAG 2 cut(s) 188, 245
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SinI GGWCC 1 cut(s) 442
Sse9I AATT 2 cut(s) 108, 313
SsiI CCGC 2 cut(s) 204, 206
SspMI CTAG 3 cut(s) 183, 333, 375
TaaI ACNGT 3 cut(s) 7, 485, 546
TaiI ACGT 1 cut(s) 398
TaqI TCGA 1 cut(s) 437
TasI AATT 2 cut(s) 108, 313
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 3 cut(s) 121, 214, 235
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 187, 247
Tsp45I GTSAC 1 cut(s) 485
TspRI CASTG 1 cut(s) 490
VneI GTGCAC 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 442
XagI CCTNNNNNAGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 313
XspI CTAG 3 cut(s) 183, 333, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.