Rmu_ssc0000249.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000249.1
OG0014281
Physical Location & Seq
Forward (+)
17235 .. 17603
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000249.1_g000005.1.cds

Sequence Viewer

Length: 369 bp
atggaggttcacgatgcatgcaacatcaaagcgaaagaagggaggctctcaagtaggctacaagagcgagcgccggcatctcttcatcttgatcaaattgcaagcactgccccagcaaaccctttttcggatactcccaatgcaatcccattactttctccagtagtcattcgatccccggagtcaatggcagagaaaatggagaaagattgtgaccaaggcatgagtagaagaaggaatactgcaacagaatcaccctttcagagtggagctggatggcagcatccggctgtttctgctttcgcggatccctcgtcgttgcttactgtctttcaatctcaatgcatgatcacaaaccacgcagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.25

Weight (kDa)

5.76

Isoelectric Point (pI)

87.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 305
AciI CCGC 1 cut(s) 305
AclWI GGATC 3 cut(s) 168, 302, 315
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 335
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 3 cut(s) 168, 302, 315
ApeKI GCWGC 1 cut(s) 280
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 307
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 270
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 2 cut(s) 91, 348
BcnI CCSGG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 74
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 3 cut(s) 4, 86, 292
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 177, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 177, 217
BseGI GGATG 2 cut(s) 281, 283
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 305
BsiSI CCGG 3 cut(s) 74, 179, 287
BslI CCNNNNNNNGG 1 cut(s) 127
Bsp143I GATC 4 cut(s) 91, 173, 307, 348
BspACI CCGC 1 cut(s) 305
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 3 cut(s) 168, 302, 315
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 177, 217
BssMI GATC 4 cut(s) 91, 173, 307, 348
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 19, 69, 75, 103
BstF5I GGATG 2 cut(s) 281, 283
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 94, 176, 310, 351
BstMBI GATC 4 cut(s) 91, 173, 307, 348
BstMWI GCNNNNNNNGC 3 cut(s) 64, 107, 296
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 281, 283
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 4 cut(s) 19, 69, 75, 103
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 73
CviAII CATG 3 cut(s) 18, 223, 346
CviJI RGCY 4 cut(s) 46, 58, 272, 290
CviKI_1 RGCY 4 cut(s) 46, 58, 272, 290
DpnI GATC 4 cut(s) 93, 175, 309, 350
DpnII GATC 4 cut(s) 91, 173, 307, 348
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 2 cut(s) 19, 347
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 21, 226, 349
FaiI YATR 3 cut(s) 19, 224, 347
FatI CATG 3 cut(s) 17, 222, 345
FbaI TGATCA 2 cut(s) 91, 348
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 2 cut(s) 270, 288
Fsp4HI GCNGC 1 cut(s) 281
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 74
HapII CCGG 3 cut(s) 74, 179, 287
HhaI GCGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 21, 226, 349
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 182, 251
HpaII CCGG 3 cut(s) 74, 179, 287
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 130, 264
Hpy188III TCNNGA 2 cut(s) 11, 89
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 32, 228
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 6 cut(s) 17, 21, 101, 143, 245, 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 64, 107, 296
Hsp92II CATG 3 cut(s) 21, 226, 349
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 91, 348
Kzo9I GATC 4 cut(s) 91, 173, 307, 348
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 6 cut(s) 87, 126, 174, 192, 258, 300
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 3 cut(s) 4, 86, 292
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 93, 175, 309, 350
MboI GATC 4 cut(s) 91, 173, 307, 348
MboII GAAGA 2 cut(s) 74, 243
MflI RGATCY 1 cut(s) 307
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 2 cut(s) 36, 322
Mph1103I ATGCAT 2 cut(s) 19, 347
MroNI GCCGGC 1 cut(s) 73
MspI CCGG 3 cut(s) 74, 179, 287
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 3 cut(s) 64, 107, 296
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 179
NdeII GATC 4 cut(s) 91, 173, 307, 348
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 3 cut(s) 21, 226, 349
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 19, 347
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 309
PsuI RGATCY 1 cut(s) 307
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 4 cut(s) 91, 173, 307, 348
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 179
SetI ASST 2 cut(s) 9, 274
SfaNI GCATC 3 cut(s) 4, 86, 292
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SphI GCATGC 1 cut(s) 21
Sse9I AATT 1 cut(s) 96
SsiI CCGC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 96
TfiI GAWTC 1 cut(s) 251
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 112
XceI RCATGY 1 cut(s) 21
Zsp2I ATGCAT 2 cut(s) 19, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.