Rh5CG474500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014281
Physical Location & Seq
Forward (+)
66292244 .. 66310540
18297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG474500.1

Sequence Viewer

Length: 606 bp
ATGGAGGTTCACAATGCATGCAACATCAAAGAGAAAGAAGGGAGGCTCTCAAGTAGGCTACAAGAGCGAGCGCCGGCATCTCTTCATCTTGATCAAATTACAAGCACTGCCCCAGCAAACCCTTTTTCGAATACTCCCAATGCAATCCCATTACTTTCTCCAGTAGTCATTCGATCCCCGGAGTCAATGGCAGAGAAAATGGAGAAAGATTGTGACCAAGGCATGAGTAGAAGAAGGAATACTGCACTAGAATCACCCATTCAGAGTGGAGTTGGATGGCAGCATCCGGCTGTGTCTGCTTTCGCGGATCCCTCGTCGTTGCTTACTGTCTTTCAATCTCAATGCATGATCACAAACCACGCAGACATCGAGACTAGCCTCAAGGAGTGTAGCCGCGACCTCTTGCTCTTCCAGTTCAAGTCCGGCACCGTCGTCCTGCTTGTCTCTTTCCCCGTTGCTGAATTTTGGCCGCCATCTTGTTCTGTAACGGTATTGGGTATGGGTATGGGTATAGATCCGCTGATTGCCAGAATAGACATTTCTCCAACTAATCAGAAGTCAAATTCTCCCGTCGCCTGCAATGAGTATTTAAAAGTGAACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.91

Weight (kDa)

5.8

Isoelectric Point (pI)

69.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 425
AccII CGCG 2 cut(s) 305, 396
AciI CCGC 4 cut(s) 305, 394, 470, 518
AclWI GGATC 4 cut(s) 168, 302, 315, 509
AcoI YGGCCR 1 cut(s) 467
AcsI RAATTY 2 cut(s) 461, 562
AgsI TTSAA 2 cut(s) 335, 418
Alw26I GTCTC 2 cut(s) 365, 448
AlwI GGATC 4 cut(s) 168, 302, 315, 509
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 2 cut(s) 461, 562
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 246
AsuII TTCGAA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 425
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 270, 481
BclI TGATCA 2 cut(s) 91, 348
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 365, 448
BfaI CTAG 2 cut(s) 248, 375
BfoI RGCGCY 1 cut(s) 74
BisI GCNGC 3 cut(s) 281, 394, 470
BlsI GCNGC 3 cut(s) 282, 395, 471
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 309, 427
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 86, 292
BpmI CTGGAG 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 2 cut(s) 34, 365
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 177, 217
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 161, 412
Bse3DI GCAATG 1 cut(s) 586
BseDI CCNNGG 2 cut(s) 177, 217
BseGI GGATG 2 cut(s) 281, 283
BseMI GCAATG 1 cut(s) 586
BseNI ACTGG 2 cut(s) 161, 412
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 305, 396
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 1 cut(s) 425
BsiSI CCGG 4 cut(s) 74, 179, 287, 423
BsmAI GTCTC 2 cut(s) 365, 448
BsnI GGCC 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 128
Bsp143I GATC 5 cut(s) 91, 173, 307, 348, 514
BspACI CCGC 4 cut(s) 305, 394, 470, 518
BspANI GGCC 1 cut(s) 469
BspFNI CGCG 2 cut(s) 305, 396
BspHI TCATGA 1 cut(s) 602
BspLI GGNNCC 2 cut(s) 309, 427
BspPI GGATC 4 cut(s) 168, 302, 315, 509
BspQI GCTCTTC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 2 cut(s) 161, 412
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 177, 217
BssMI GATC 5 cut(s) 91, 173, 307, 348, 514
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 3 cut(s) 328, 430, 490
Bst6I CTCTTC 2 cut(s) 87, 413
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 19, 69, 75, 577
BstF5I GGATG 2 cut(s) 281, 283
BstFNI CGCG 2 cut(s) 305, 396
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 5 cut(s) 94, 176, 310, 351, 517
BstMAI GTCTC 2 cut(s) 365, 448
BstMBI GATC 5 cut(s) 91, 173, 307, 348, 514
BstMWI GCNNNNNNNGC 2 cut(s) 64, 296
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 2 cut(s) 305, 396
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 2 cut(s) 307, 514
BstYI RGATCY 2 cut(s) 307, 514
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 2 cut(s) 281, 283
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 4 cut(s) 19, 69, 75, 577
CciI TCATGA 1 cut(s) 602
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 73
CviAII CATG 4 cut(s) 18, 223, 346, 603
CviJI RGCY 6 cut(s) 46, 58, 290, 378, 393, 469
CviKI_1 RGCY 6 cut(s) 46, 58, 290, 378, 393, 469
DpnI GATC 5 cut(s) 93, 175, 309, 350, 516
DpnII GATC 5 cut(s) 91, 173, 307, 348, 514
DraI TTTAAA 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 2 cut(s) 87, 413
EarI CTCTTC 2 cut(s) 87, 413
Eco130I CCWWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 2 cut(s) 19, 347
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 4 cut(s) 21, 226, 349, 606
FaiI YATR 7 cut(s) 19, 224, 347, 500, 506, 512, 604
FatI CATG 4 cut(s) 17, 222, 345, 602
FbaI TGATCA 2 cut(s) 91, 348
Fnu4HI GCNGC 3 cut(s) 281, 394, 470
FokI GGATG 2 cut(s) 270, 288
Fsp4HI GCNGC 3 cut(s) 281, 394, 470
FspBI CTAG 2 cut(s) 248, 375
GlaI GCGC 1 cut(s) 72
GluI GCNGC 3 cut(s) 281, 394, 470
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 1 cut(s) 469
HapII CCGG 4 cut(s) 74, 179, 287, 423
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 21, 226, 349, 606
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 182, 251
HpaII CCGG 4 cut(s) 74, 179, 287, 423
HphI GGTGA 1 cut(s) 246
Hpy166II GTNNAC 2 cut(s) 10, 598
Hpy188I TCNGA 2 cut(s) 264, 555
Hpy188III TCNNGA 3 cut(s) 89, 370, 603
Hpy8I GTNNAC 2 cut(s) 10, 598
Hpy99I CGWCG 3 cut(s) 319, 434, 575
HpyAV CCTTC 2 cut(s) 32, 228
HpyCH4III ACNGT 3 cut(s) 328, 430, 490
HpyCH4V TGCA 6 cut(s) 17, 21, 143, 245, 345, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 296
Hsp92II CATG 4 cut(s) 21, 226, 349, 606
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 91, 348
Kzo9I GATC 5 cut(s) 91, 173, 307, 348, 514
LguI GCTCTTC 1 cut(s) 413
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 86, 292
MaeI CTAG 2 cut(s) 248, 375
MaeIII GTNAC 2 cut(s) 212, 484
MalI GATC 5 cut(s) 93, 175, 309, 350, 516
MboI GATC 5 cut(s) 91, 173, 307, 348, 514
MboII GAAGA 3 cut(s) 74, 243, 400
MflI RGATCY 2 cut(s) 307, 514
MluCI AATT 3 cut(s) 96, 461, 562
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 2 cut(s) 253, 569
MnlI CCTC 4 cut(s) 36, 322, 389, 410
Mph1103I ATGCAT 2 cut(s) 19, 347
MroNI GCCGGC 1 cut(s) 73
MseI TTAA 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 520
MspI CCGG 4 cut(s) 74, 179, 287, 423
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 2 cut(s) 305, 396
MwoI GCNNNNNNNGC 2 cut(s) 64, 296
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 179
NdeII GATC 5 cut(s) 91, 173, 307, 348, 514
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 4 cut(s) 21, 226, 349, 606
NlaIV GGNNCC 2 cut(s) 309, 427
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 19, 347
NspI RCATGY 1 cut(s) 21
NspV TTCGAA 1 cut(s) 128
PaeI GCATGC 1 cut(s) 21
PagI TCATGA 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PdiI GCCGGC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 3 cut(s) 282, 395, 471
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 309, 427
PsuI RGATCY 2 cut(s) 307, 514
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 3 cut(s) 281, 394, 470
Sau3AI GATC 5 cut(s) 91, 173, 307, 348, 514
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 179
SetI ASST 2 cut(s) 9, 402
SfaNI GCATC 2 cut(s) 86, 292
SfuI TTCGAA 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 49, 380
SmoI CTYRAG 2 cut(s) 49, 380
SphI GCATGC 1 cut(s) 21
Sse9I AATT 3 cut(s) 96, 461, 562
SsiI CCGC 4 cut(s) 305, 394, 470, 518
SspMI CTAG 2 cut(s) 248, 375
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 3 cut(s) 328, 430, 490
TaqI TCGA 3 cut(s) 128, 172, 369
TasI AATT 3 cut(s) 96, 461, 562
TauI GCSGC 2 cut(s) 396, 472
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 112
XapI RAATTY 2 cut(s) 461, 562
XceI RCATGY 1 cut(s) 21
XspI CTAG 2 cut(s) 248, 375
Zsp2I ATGCAT 2 cut(s) 19, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.