Rw5G040830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014281
Physical Location & Seq
Forward (+)
72093592 .. 72093961
370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040830.1

Sequence Viewer

Length: 324 bp
ATGGAGGTTCACAATGCATGCAACATCAAAGCGAAAGAAGGGAGGCTCTCGAGTAGGCTACAAGAGCGAGCGCCGGCATCTCTTCATCTTGATCAAATTACAAGCACTGCCCCAGCAAACCCTTTTTCGGATACTCCCAATGCAATCCCATTACTTTCTCCAGTAGTCATTCGATCCCCGGAGTCAATGGCAGAGAAAATGGAGAAAGATTGTGACCAAGGCATGACTGGATGGCAGCATCCGGCTGTTTCTGCTTTCGCGGATCCCTCGTCGTTGCTTACTGTCTTTCAATCTCAATGCATGATCACAAACCACGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.63

Weight (kDa)

5.46

Isoelectric Point (pI)

69.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 1 cut(s) 260
AclWI GGATC 3 cut(s) 168, 257, 270
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 290
AlwI GGATC 3 cut(s) 168, 257, 270
Ama87I CYCGRG 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 49
BamHI GGATCC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 225
BciVI GTATCC 1 cut(s) 124
BclI TGATCA 2 cut(s) 91, 303
BcnI CCSGG 1 cut(s) 179
BfoI RGCGCY 1 cut(s) 74
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 1 cut(s) 236
BlsI GCNGC 1 cut(s) 237
Bme1390I CCNGG 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 86, 247
BpmI CTGGAG 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 177, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 161, 232
BseDI CCNNGG 2 cut(s) 177, 217
BseGI GGATG 2 cut(s) 236, 238
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 161, 232
BseXI GCAGC 1 cut(s) 247
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 3 cut(s) 74, 179, 242
BslI CCNNNNNNNGG 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 49
Bsp143I GATC 4 cut(s) 91, 173, 262, 303
BspACI CCGC 1 cut(s) 260
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 3 cut(s) 168, 257, 270
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 2 cut(s) 161, 232
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 177, 217
BssMI GATC 4 cut(s) 91, 173, 262, 303
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 19, 69, 75
BstF5I GGATG 2 cut(s) 236, 238
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 4 cut(s) 94, 176, 265, 306
BstMBI GATC 4 cut(s) 91, 173, 262, 303
BstMWI GCNNNNNNNGC 2 cut(s) 64, 251
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 177
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuI GTATCC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 236, 238
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 19, 69, 75
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 73
CviAII CATG 3 cut(s) 18, 223, 301
CviJI RGCY 3 cut(s) 46, 58, 245
CviKI_1 RGCY 3 cut(s) 46, 58, 245
DpnI GATC 4 cut(s) 93, 175, 264, 305
DpnII GATC 4 cut(s) 91, 173, 262, 303
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 217
EcoT22I ATGCAT 2 cut(s) 19, 302
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 21, 226, 304
FaiI YATR 3 cut(s) 19, 224, 302
FatI CATG 3 cut(s) 17, 222, 300
FbaI TGATCA 2 cut(s) 91, 303
Fnu4HI GCNGC 1 cut(s) 236
FokI GGATG 2 cut(s) 225, 243
Fsp4HI GCNGC 1 cut(s) 236
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 236
GsaI CCCAGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 74
HapII CCGG 3 cut(s) 74, 179, 242
HhaI GCGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 21, 226, 304
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 74, 179, 242
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 49, 89
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 4 cut(s) 17, 21, 143, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 251
Hsp92II CATG 3 cut(s) 21, 226, 304
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 91, 303
Kzo9I GATC 4 cut(s) 91, 173, 262, 303
LpnPI CCDG 6 cut(s) 87, 126, 174, 192, 213, 255
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 86, 247
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 93, 175, 264, 305
MboI GATC 4 cut(s) 91, 173, 262, 303
MboII GAAGA 1 cut(s) 74
MflI RGATCY 1 cut(s) 262
MluCI AATT 1 cut(s) 96
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 2 cut(s) 36, 277
Mph1103I ATGCAT 2 cut(s) 19, 302
MroNI GCCGGC 1 cut(s) 73
MspI CCGG 3 cut(s) 74, 179, 242
MspR9I CCNGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 64, 251
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 1 cut(s) 179
NdeII GATC 4 cut(s) 91, 173, 262, 303
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 3 cut(s) 21, 226, 304
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 19, 302
NspI RCATGY 1 cut(s) 21
PaeI GCATGC 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 237
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 264
PsuI RGATCY 1 cut(s) 262
SatI GCNGC 1 cut(s) 236
Sau3AI GATC 4 cut(s) 91, 173, 262, 303
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 179
SetI ASST 1 cut(s) 9
SfaNI GCATC 2 cut(s) 86, 247
Sfr274I CTCGAG 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SphI GCATGC 1 cut(s) 21
Sse9I AATT 1 cut(s) 96
SsiI CCGC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 50, 172
TasI AATT 1 cut(s) 96
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 74
TspRI CASTG 1 cut(s) 112
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 49
Zsp2I ATGCAT 2 cut(s) 19, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.