FvH4_3g36931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014281
Physical Location & Seq
Forward (+)
31619453 .. 31620091
639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36931.t1

Sequence Viewer

Length: 375 bp
ATGGAGTTTCACTTTCACAATGCATGCCACAGCAAAGACAAAGAAGCGAGGCTCCCAACTAGGCTACAAAAGCAAGCCCCGGCATCTCTTCATGTTGATCAAATGACAAGCAATGCCCGAACAAACCCTTTTTCAGATTCTCCTAATGCAATTCCATTACTTTCTCCGGTAGTCATTCGATCCCCGGCATCAATGTCAGAGAAAATGGAGACAGACGGTGGCCATGGCACGAATAGAAGGAACAGTGCTCCACCGGAGTCACCCTTTCAGGGTGGAGCTGGATGGCAGCATCCGGCTGTCTCGAGTTTCGCAGATCCATCGTCATTGTTTACTGTCTTTCAATCTCAATGCATGATCACAAACCATGCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.53

Weight (kDa)

7.06

Isoelectric Point (pI)

78.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07473 AT1G07476
fragaria_vesca FvH4_3g36931
prunus_persica Prupe.6G070600_v2.0.a1
pyrus_communis pycom11g08060
rosa_chinensis RchiOBHm_Chr5g0066341
rosa_laevigata RLG00000035852
rosa_multiflora Rmu_sc0006887.1_g000002 Rmu_ssc0000249.1_g000002 Rmu_ssc0000249.1_g000005
rosa_samantha Rh5AG435900 Rh5BG452300 Rh5CG474500 Rh5CG474800 Rh5DG467100 Rh5DG467300
rosa_wichuraiana Rw5G040830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 174, 308
AcoI YGGCCR 1 cut(s) 220
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 341
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 203, 304
AlwI GGATC 2 cut(s) 174, 308
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 286
AsuC2I CCSGG 2 cut(s) 80, 185
AsuHPI GGTGA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 301
BalI TGGCCA 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 276, 325
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BclI TGATCA 2 cut(s) 97, 354
BcnI CCSGG 2 cut(s) 80, 185
BcoDI GTCTC 2 cut(s) 203, 304
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 80, 185
BmeT110I CYCGRG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 2 cut(s) 80, 185
BmsI GCATC 3 cut(s) 92, 197, 298
BpuMI CCSGG 2 cut(s) 80, 185
BsaJI CCNNGG 3 cut(s) 78, 183, 223
BsaWI WCCGGW 2 cut(s) 166, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 78, 183, 223
BseGI GGATG 2 cut(s) 287, 289
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 5 cut(s) 80, 167, 185, 254, 293
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 203, 304
BsnI GGCC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 97, 179, 313, 354
Bsp19I CCATGG 1 cut(s) 223
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 2 cut(s) 174, 308
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 3 cut(s) 78, 183, 223
BssMI GATC 4 cut(s) 97, 179, 313, 354
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 4 cut(s) 218, 245, 334, 372
Bst6I CTCTTC 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 25, 75
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 287, 289
BstKTI GATC 4 cut(s) 100, 182, 316, 357
BstMAI GTCTC 2 cut(s) 203, 304
BstMBI GATC 4 cut(s) 97, 179, 313, 354
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 78, 183
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 287, 289
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 25, 75
CviAII CATG 5 cut(s) 24, 92, 224, 352, 365
CviJI RGCY 6 cut(s) 52, 64, 77, 222, 278, 296
CviKI_1 RGCY 6 cut(s) 52, 64, 77, 222, 278, 296
DpnI GATC 4 cut(s) 99, 181, 315, 356
DpnII GATC 4 cut(s) 97, 179, 313, 354
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 223
Eco88I CYCGRG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 223
EcoT22I ATGCAT 2 cut(s) 25, 353
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 5 cut(s) 27, 95, 227, 355, 368
FaiI YATR 5 cut(s) 25, 93, 225, 353, 366
FatI CATG 5 cut(s) 23, 91, 223, 351, 364
FbaI TGATCA 2 cut(s) 97, 354
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 2 cut(s) 276, 294
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 1 cut(s) 222
HapII CCGG 5 cut(s) 80, 167, 185, 254, 293
Hin1II CATG 5 cut(s) 27, 95, 227, 355, 368
HinfI GANTC 2 cut(s) 137, 257
HpaII CCGG 5 cut(s) 80, 167, 185, 254, 293
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 2 cut(s) 136, 199
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 4 cut(s) 218, 245, 334, 372
HpyCH4V TGCA 4 cut(s) 23, 149, 351, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
Hsp92II CATG 5 cut(s) 27, 95, 227, 355, 368
Ksp22I TGATCA 2 cut(s) 97, 354
Kzo9I GATC 4 cut(s) 97, 179, 313, 354
LmnI GCTCC 3 cut(s) 57, 253, 275
LpnPI CCDG 7 cut(s) 93, 180, 198, 254, 264, 267, 306
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 3 cut(s) 92, 197, 298
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 258
MalI GATC 4 cut(s) 99, 181, 315, 356
MboI GATC 4 cut(s) 97, 179, 313, 354
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 150
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 1 cut(s) 42
Mox20I TGGCCA 1 cut(s) 222
Mph1103I ATGCAT 2 cut(s) 25, 353
MscI TGGCCA 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 222
MspI CCGG 5 cut(s) 80, 167, 185, 254, 293
MspR9I CCNGG 2 cut(s) 80, 185
MwoI GCNNNNNNNGC 1 cut(s) 70
NciI CCSGG 2 cut(s) 80, 185
NcoI CCATGG 1 cut(s) 223
NdeII GATC 4 cut(s) 97, 179, 313, 354
NlaIII CATG 5 cut(s) 27, 95, 227, 355, 368
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 2 cut(s) 25, 353
NspI RCATGY 1 cut(s) 27
PaeI GCATGC 1 cut(s) 27
PaeR7I CTCGAG 1 cut(s) 301
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 313
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 4 cut(s) 97, 179, 313, 354
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 2 cut(s) 80, 185
SduI GDGCHC 1 cut(s) 250
SetI ASST 1 cut(s) 280
SfaNI GCATC 3 cut(s) 92, 197, 298
Sfr274I CTCGAG 1 cut(s) 301
SlaI CTCGAG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SphI GCATGC 1 cut(s) 27
Sse9I AATT 1 cut(s) 150
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 2 cut(s) 78, 183
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 4 cut(s) 218, 245, 334, 372
TaqI TCGA 2 cut(s) 178, 302
TasI AATT 1 cut(s) 150
TfiI GAWTC 1 cut(s) 137
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 80
TspRI CASTG 1 cut(s) 250
XceI RCATGY 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 301
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 2 cut(s) 25, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.