Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Reverse (-)

2400589 .. 2402942

Gene Structure 2354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07745.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGCCTCTCAAACATCTGGAGAAGGAAAATCCAATCATCGACGCATGTTTCCAAGATTTCTGCGCCTCTCATGGAATTTTAACAATTGAGGATTTCCTTCTGCATGATCTCTACGAACTTACTGCATTTTCTCAACGGCAGACAAATGCAGATAGATTGAAAGAGGGTATCACTCTCATCCTCTCTTTGATAGAACGTCAGTGTCGGCCATTGGTGAATGGTTTAAAACTGTTGGAGGATCTACACCGTAATAAACATACTCTGTCGACTGGAGACAAAGAGACGGACTCATTGCTTCAAGGTGGATTCCGTGAGGGTCAGCTTACAGAACTTGTCGGACCTTCCTCTTCTGGGAAAACACAATTTTGCATGCAAGCTGCTGCAAGTGTAGCAGAGAATCATCTTGGCAGAGTCTTGTATTTAGACACAGGGAACTCTTTTTCTGCCCGACGCATTGCTCAATTTATCTGCTCCAGTTCAGATGCTACTTTAGGGCAGAAAGTCATGAGCAGAATATTATGCCACACGGTCTATGACATATATACACTGTTTGATACGCTGCAAGATCTAGAGATTACTTTGAGGTTGCAGATGAATGTGAATGAGTCCCGACTACGATTGTTAGTTGTTGATTCAATCTCTTCTCTGATTACTCCAATCCTTGGAGGCAGTGGCTCACAGGGACGCGCTTTGATGGTGGCAATTGGATATTTGCTTAAGAAGCTGGCTCATGAACATAGCATCGCTATACTGGTGACAAATCACACGGTGGGTGCTGGAGGAGAAGGTGGTAAAACCAAACCAGCTCTTGGGGAAACATGGAAAAGCATCCCACACGTGAGACTTTCGCTATCACGTGACCATAAGAACAGCAACTGCACCATCTCCATCTTAAAACACACATCCTTGCCTTCAGGCCAAGCTGCGAAGACCTTGACTCGCAAGGAGAATCAACAATGTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

322

Amino Acids

35.38

Weight (kDa)

8.1

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	70 - 292	2.8e-19	Rad51
AAA_25	PF13481	75 - 239	1.9e-10	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	665, 812
AccI	GTMKAC	1 cut(s)	269
AccII	CGCG	1 cut(s)	690
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	900
AcvI	CACGTG	2 cut(s)	841, 860
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	772
AfiI	CCNNNNNNNGG	3 cut(s)	354, 665, 812
AflII	CTTAAG	1 cut(s)	719
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	3 cut(s)	163, 302, 639
AluBI	AGCT	5 cut(s)	325, 380, 727, 809, 926
AluI	AGCT	5 cut(s)	325, 380, 727, 809, 926
Alw26I	GTCTC	3 cut(s)	270, 278, 838
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	879
AoxI	GGCC	2 cut(s)	209, 919
ApeKI	GCWGC	4 cut(s)	380, 383, 562, 926
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	3 cut(s)	7, 68, 692
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	229, 769
AvaII	GGWCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	4
BbrPI	CACGTG	2 cut(s)	841, 860
BbsI	GAAGAC	1 cut(s)	938
BbvI	GCAGC	4 cut(s)	367, 370, 549, 913
BccI	CCATC	3 cut(s)	691, 893, 899
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BcoDI	GTCTC	3 cut(s)	270, 278, 838
BfaI	CTAG	1 cut(s)	572
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	719
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	4 cut(s)	381, 384, 563, 927
BlsI	GCNGC	4 cut(s)	382, 385, 564, 928
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	475, 753, 840
BpiI	GAAGAC	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpmI	CTGGAG	4 cut(s)	41, 294, 460, 801
BsaAI	YACGTR	2 cut(s)	841, 860
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	3 cut(s)	354, 665, 812
Bse1I	ACTGG	3 cut(s)	277, 477, 759
Bse3DI	GCAATG	2 cut(s)	293, 456
BseDI	CCNNGG	1 cut(s)	664
BseGI	GGATG	3 cut(s)	180, 831, 905
BseLI	CCNNNNNNNGG	3 cut(s)	354, 665, 812
BseMI	GCAATG	2 cut(s)	293, 456
BseNI	ACTGG	3 cut(s)	277, 477, 759
BseRI	GAGGAG	1 cut(s)	798
BseXI	GCAGC	4 cut(s)	367, 370, 549, 913
BsgI	GTGCAG	1 cut(s)	865
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	211, 921
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	2 cut(s)	595, 699
BslI	CCNNNNNNNGG	3 cut(s)	354, 665, 812
BsmAI	GTCTC	3 cut(s)	270, 278, 838
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	595, 699
BsnI	GGCC	2 cut(s)	211, 921
Bsp143I	GATC	3 cut(s)	109, 241, 568
BspANI	GGCC	2 cut(s)	211, 921
BspFNI	CGCG	1 cut(s)	690
BspHI	TCATGA	2 cut(s)	507, 733
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	719
BsrDI	GCAATG	2 cut(s)	293, 456
BsrI	ACTGG	3 cut(s)	277, 477, 759
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	3 cut(s)	109, 241, 568
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	664
Bst4CI	ACNGT	5 cut(s)	234, 251, 532, 552, 772
Bst6I	CTCTTC	2 cut(s)	355, 649
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	719
BstBAI	YACGTR	2 cut(s)	841, 860
BstC8I	GCNNGC	3 cut(s)	374, 378, 729
BstF5I	GGATG	3 cut(s)	180, 831, 905
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 68, 692
BstKTI	GATC	3 cut(s)	112, 244, 571
BstMAI	GTCTC	3 cut(s)	270, 278, 838
BstMBI	GATC	3 cut(s)	109, 241, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 724
BstNSI	RCATGY	2 cut(s)	51, 376
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	4 cut(s)	367, 370, 549, 913
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	2 cut(s)	241, 568
BstYI	RGATCY	2 cut(s)	241, 568
BsuRI	GGCC	2 cut(s)	211, 921
BtgZI	GCGATG	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	180, 831, 905
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	3 cut(s)	209, 548, 679
Cac8I	GCNNGC	3 cut(s)	374, 378, 729
CaiI	CAGNNNCTG	1 cut(s)	879
CciI	TCATGA	2 cut(s)	507, 733
CfoI	GCGC	3 cut(s)	7, 68, 692
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	3 cut(s)	53, 462, 696
CviAII	CATG	7 cut(s)	48, 74, 107, 373, 508, 734, 822
CviJI	RGCY	9 cut(s)	211, 325, 380, 678, 727, 731, 809, 921, 926
CviKI_1	RGCY	9 cut(s)	211, 325, 380, 678, 727, 731, 809, 921, 926
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	111, 243, 570
DpnII	GATC	3 cut(s)	109, 241, 568
DraI	TTTAAA	1 cut(s)	228
DraIII	CACNNNGTG	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	355, 649
EarI	CTCTTC	2 cut(s)	355, 649
Eco130I	CCWWGG	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	900
Eco72I	CACGTG	2 cut(s)	841, 860
EcoT14I	CCWWGG	1 cut(s)	664
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	664
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	7 cut(s)	51, 77, 110, 376, 511, 737, 825
FaqI	GGGAC	2 cut(s)	595, 699
FatI	CATG	7 cut(s)	47, 73, 106, 372, 507, 733, 821
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	4 cut(s)	381, 384, 563, 927
FokI	GGATG	3 cut(s)	167, 818, 892
Fsp4HI	GCNGC	4 cut(s)	381, 384, 563, 927
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	3 cut(s)	6, 67, 691
GluI	GCNGC	4 cut(s)	381, 384, 563, 927
GsuI	CTGGAG	4 cut(s)	41, 294, 460, 801
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	211, 921
HgaI	GACGC	3 cut(s)	53, 462, 696
HhaI	GCGC	3 cut(s)	7, 68, 692
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	51, 77, 110, 376, 511, 737, 825
Hin6I	GCGC	3 cut(s)	5, 66, 690
HinP1I	GCGC	3 cut(s)	5, 66, 690
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	8 cut(s)	290, 309, 400, 414, 608, 635, 940, 952
HphI	GGTGA	2 cut(s)	229, 769
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	3 cut(s)	341, 484, 651
Hpy188III	TCNNGA	5 cut(s)	20, 508, 572, 612, 734
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	2 cut(s)	47, 456
HpyAV	CCTTC	5 cut(s)	19, 110, 354, 782, 924
HpyCH4III	ACNGT	5 cut(s)	234, 251, 532, 552, 772
HpyCH4IV	ACGT	3 cut(s)	199, 840, 859
HpyCH4V	TGCA	9 cut(s)	106, 128, 152, 372, 376, 386, 565, 592, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 724
HpySE526I	ACGT	3 cut(s)	199, 840, 859
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	51, 77, 110, 376, 511, 737, 825
HspAI	GCGC	3 cut(s)	5, 66, 690
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	109, 241, 568
LmnI	GCTCC	1 cut(s)	479
Lsp1109I	GCAGC	4 cut(s)	367, 370, 549, 913
LweI	GCATC	3 cut(s)	475, 753, 840
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	3 cut(s)	199, 840, 859
MaeIII	GTNAC	2 cut(s)	757, 860
MalI	GATC	3 cut(s)	111, 243, 570
MboI	GATC	3 cut(s)	109, 241, 568
MboII	GAAGA	3 cut(s)	342, 636, 943
MfeI	CAATTG	2 cut(s)	87, 705
MflI	RGATCY	2 cut(s)	241, 568
MluCI	AATT	5 cut(s)	78, 87, 365, 464, 705
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	284, 423, 617, 934
MmeI	TCCRAC	2 cut(s)	216, 319
MseI	TTAA	4 cut(s)	83, 227, 720, 896
MspCI	CTTAAG	1 cut(s)	719
MunI	CAATTG	2 cut(s)	87, 705
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	392, 724
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	109, 241, 568
NlaIII	CATG	7 cut(s)	51, 77, 110, 376, 511, 737, 825
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	757, 860
NspI	RCATGY	2 cut(s)	51, 376
PaeI	GCATGC	1 cut(s)	376
PagI	TCATGA	2 cut(s)	507, 733
PfeI	GAWTC	4 cut(s)	309, 400, 635, 952
PflMI	CCANNNNNTGG	2 cut(s)	665, 812
PkrI	GCNGC	4 cut(s)	382, 385, 564, 928
PleI	GAGTC	4 cut(s)	284, 422, 616, 934
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	2 cut(s)	841, 860
PmlI	CACGTG	2 cut(s)	841, 860
PpsI	GAGTC	4 cut(s)	284, 422, 616, 934
Ppu21I	YACGTR	2 cut(s)	841, 860
PspCI	CACGTG	2 cut(s)	841, 860
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	341
PstNI	CAGNNNCTG	1 cut(s)	879
PsuI	RGATCY	2 cut(s)	241, 568
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	83, 227, 720, 896
SatI	GCNGC	4 cut(s)	381, 384, 563, 927
Sau3AI	GATC	3 cut(s)	109, 241, 568
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	4 cut(s)	284, 423, 617, 934
SfaNI	GCATC	3 cut(s)	475, 753, 840
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SphI	GCATGC	1 cut(s)	376
Sse9I	AATT	5 cut(s)	78, 87, 365, 464, 705
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	1 cut(s)	572
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	5 cut(s)	234, 251, 532, 552, 772
TaiI	ACGT	3 cut(s)	202, 843, 862
TaqI	TCGA	2 cut(s)	42, 269
TasI	AATT	5 cut(s)	78, 87, 365, 464, 705
TfiI	GAWTC	4 cut(s)	309, 400, 635, 952
Tru1I	TTAA	4 cut(s)	83, 227, 720, 896
Tru9I	TTAA	4 cut(s)	83, 227, 720, 896
TscAI	CASTG	3 cut(s)	209, 555, 679
TseFI	GTSAC	2 cut(s)	757, 860
TseI	GCWGC	4 cut(s)	380, 383, 562, 926
Tsp45I	GTSAC	2 cut(s)	757, 860
TspDTI	ATGAA	2 cut(s)	611, 750
TspGWI	ACGGA	2 cut(s)	302, 302
TspRI	CASTG	3 cut(s)	209, 555, 679
Van91I	CCANNNNNTGG	2 cut(s)	665, 812
Vha464I	CTTAAG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	78
XbaI	TCTAGA	1 cut(s)	571
XceI	RCATGY	2 cut(s)	51, 376
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.