Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Reverse (-)

4613657 .. 4616869

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G066800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCACCGTTGAAAGCTTTGGAGGCAGAGTACCCAATACTCGACCCCAATTTCCAGGCCTTTTGCGCCTCTCACGGTATTTTCTCAGTGGAAGATTTCCTCATTCATGACCTCTATGAATTAGCTGCATTTGCAGAACAACAGCCTACATCTGAGAAACTAAAGCAGGGCATTACTCAGGTCCTCTCTATTATTGACACTCAGCATCAACCATGGTTGAATGGTTTGGAGCTTTTAGATGATGCTCTACATAACAAGCATGTACTGTCAACTGGGCGTGAAGGAATTGATTTGTTACTAGGAGGCGGATTACGTGAGGGACAATTAACTGAAATTGTTGGGCCATCTTCTTGTGGTAAAACACAAGTTTGCCTACTTGCTGCTTCAAATGTTGCAACGAAGCAAATGGGTAATGTTGTATACCTGGACACAGGCAACTCTTTCTCACCCCAACGAATTGCCCAGTTTGTTGGTCATATCGCTGGCTGTGCCTTTGATGAGGCTGGAAAAAGAATTTTTCAGAGGATAATGAACAGCATTGTATGCCATTCTGTGTTTGACATCTTTACAATGTTCAACGTGTTACATCGGCTAGTGATCAATTTTCCATCTCAGCTGCAGAAAGGAGGGCAGGTCCGGTTACTTATTGTTGATTCGATCTCTTCATTAATTACCCCGATTCTTGGGAACAGTGGTTCACAGGGACGTGCCTTGATGATATCTGCTGGGTATATGTTAAAGAAATTAGCACATGAGCATAATGTTGCGGTACTGGTGACCAATCACACAGTGGGTGGGGAAAGAGGTATTCCAAAACCCGGCCCTTGGACAGACCTGGAAGAGCATCCCACATGTGAGGCTTCTACTTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

292

Amino Acids

31.76

Weight (kDa)

5.81

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	2 cut(s)	306, 767
AcsI	RAATTY	1 cut(s)	513
AdeI	CACNNNGTG	1 cut(s)	790
AfaI	GTAC	3 cut(s)	32, 264, 771
AfiI	CCNNNNNNNGG	3 cut(s)	683, 818, 825
AflIII	ACRYGT	2 cut(s)	579, 851
AgsI	TTSAA	4 cut(s)	13, 220, 387, 577
AjiI	CACGTC	1 cut(s)	707
AjnI	CCWGG	3 cut(s)	54, 423, 834
AloI	GAACNNNNNNTCC	2 cut(s)	679, 711
AluBI	AGCT	4 cut(s)	17, 125, 232, 616
AluI	AGCT	4 cut(s)	17, 125, 232, 616
AoxI	GGCC	3 cut(s)	57, 341, 820
ApeKI	GCWGC	3 cut(s)	125, 380, 616
ApoI	RAATTY	1 cut(s)	513
AseI	ATTAAT	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	4 cut(s)	181, 341, 634, 821
AsuC2I	CCSGG	1 cut(s)	819
AsuHPI	GGTGA	2 cut(s)	438, 787
AvaII	GGWCC	2 cut(s)	181, 634
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	112, 367, 603
BccI	CCATC	2 cut(s)	352, 616
BciT130I	CCWGG	3 cut(s)	56, 425, 836
BclI	TGATCA	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	819
BfaI	CTAG	2 cut(s)	299, 593
BfmI	CTRYAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	126, 381, 617
BlsI	GCNGC	3 cut(s)	127, 382, 618
Bme1390I	CCNGG	4 cut(s)	56, 425, 819, 836
Bme18I	GGWCC	2 cut(s)	181, 634
BmgBI	CACGTC	1 cut(s)	707
BmgT120I	GGNCC	4 cut(s)	181, 341, 634, 821
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	56, 425, 819, 836
BmrI	ACTGGG	2 cut(s)	282, 457
BmsI	GCATC	3 cut(s)	214, 232, 853
BmuI	ACTGGG	2 cut(s)	282, 457
BpuMI	CCSGG	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	212, 824
BsaWI	WCCGGW	1 cut(s)	636
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 618, 648
Bsc4I	CCNNNNNNNGG	3 cut(s)	683, 818, 825
Bse1I	ACTGG	3 cut(s)	277, 463, 777
BseBI	CCWGG	3 cut(s)	56, 425, 836
BseDI	CCNNGG	2 cut(s)	212, 824
BseGI	GGATG	1 cut(s)	844
BseLI	CCNNNNNNNGG	3 cut(s)	683, 818, 825
BseMII	CTCAG	5 cut(s)	99, 144, 191, 215, 626
BseNI	ACTGG	3 cut(s)	277, 463, 777
BseXI	GCAGC	3 cut(s)	112, 367, 603
BseYI	CCCAGC	1 cut(s)	725
BshFI	GGCC	3 cut(s)	59, 343, 822
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	637, 819
BslFI	GGGAC	2 cut(s)	333, 717
BslI	CCNNNNNNNGG	3 cut(s)	683, 818, 825
BsmFI	GGGAC	2 cut(s)	333, 717
BsnI	GGCC	3 cut(s)	59, 343, 822
Bsp143I	GATC	2 cut(s)	597, 657
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	2 cut(s)	306, 767
BspANI	GGCC	3 cut(s)	59, 343, 822
BspCNI	CTCAG	5 cut(s)	98, 145, 190, 214, 625
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	622
BspQI	GCTCTTC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	277, 463, 777
BssECI	CCNNGG	2 cut(s)	212, 824
BssMI	GATC	2 cut(s)	597, 657
BssNAI	GTATAC	1 cut(s)	421
BssT1I	CCWWGG	2 cut(s)	212, 824
Bst1107I	GTATAC	1 cut(s)	421
Bst2UI	CCWGG	3 cut(s)	56, 425, 836
Bst4CI	ACNGT	5 cut(s)	9, 77, 267, 692, 790
Bst6I	CTCTTC	2 cut(s)	667, 834
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	5 cut(s)	85, 153, 177, 201, 612
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	775
BstF5I	GGATG	1 cut(s)	844
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	600, 660
BstMBI	GATC	2 cut(s)	597, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 65, 131, 488, 543
BstNI	CCWGG	3 cut(s)	56, 425, 836
BstNSI	RCATGY	2 cut(s)	263, 855
BstPI	GGTNACC	1 cut(s)	775
BstSCI	CCNGG	4 cut(s)	54, 423, 817, 834
BstSFI	CTRYAG	1 cut(s)	617
BstV1I	GCAGC	3 cut(s)	112, 367, 603
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstZ17I	GTATAC	1 cut(s)	421
BsuRI	GGCC	3 cut(s)	59, 343, 822
BtgI	CCRYGG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	707
BtsCI	GGATG	1 cut(s)	844
BtsIMutI	CAGTG	3 cut(s)	93, 697, 795
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	484
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	4 cut(s)	181, 341, 634, 821
Csp6I	GTAC	3 cut(s)	31, 263, 770
CviAII	CATG	5 cut(s)	107, 213, 260, 752, 852
CviQI	GTAC	3 cut(s)	31, 263, 770
DdeI	CTNAG	5 cut(s)	85, 153, 177, 201, 612
DpnI	GATC	2 cut(s)	599, 659
DpnII	GATC	2 cut(s)	597, 657
DraIII	CACNNNGTG	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	667, 834
EarI	CTCTTC	2 cut(s)	667, 834
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	212, 824
Eco147I	AGGCCT	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	720
Eco47I	GGWCC	2 cut(s)	181, 634
Eco91I	GGTNACC	1 cut(s)	775
EcoO109I	RGGNCCY	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	775
EcoRII	CCWGG	3 cut(s)	54, 423, 834
EcoRV	GATATC	1 cut(s)	720
EcoT14I	CCWWGG	2 cut(s)	212, 824
ErhI	CCWWGG	2 cut(s)	212, 824
FaeI	CATG	5 cut(s)	110, 216, 263, 755, 855
FaqI	GGGAC	2 cut(s)	333, 717
FatI	CATG	5 cut(s)	106, 212, 259, 751, 851
FbaI	TGATCA	1 cut(s)	597
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	126, 381, 617
FokI	GGATG	1 cut(s)	831
Fsp4HI	GCNGC	3 cut(s)	126, 381, 617
FspBI	CTAG	2 cut(s)	299, 593
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	126, 381, 617
GsaI	CCCAGC	1 cut(s)	729
HaeIII	GGCC	3 cut(s)	59, 343, 822
HapII	CCGG	2 cut(s)	637, 819
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	110, 216, 263, 755, 855
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	653, 679
HpaII	CCGG	2 cut(s)	637, 819
HphI	GGTGA	2 cut(s)	438, 787
Hpy166II	GTNNAC	3 cut(s)	270, 421, 698
Hpy188I	TCNGA	2 cut(s)	154, 522
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	3 cut(s)	270, 421, 698
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	5 cut(s)	9, 77, 267, 692, 790
HpyCH4IV	ACGT	3 cut(s)	313, 579, 706
HpyCH4V	TGCA	4 cut(s)	128, 134, 395, 619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 65, 131, 488, 543
HpyF3I	CTNAG	5 cut(s)	85, 153, 177, 201, 612
HpySE526I	ACGT	3 cut(s)	313, 579, 706
Hsp92II	CATG	5 cut(s)	110, 216, 263, 755, 855
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	597, 657
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	3 cut(s)	112, 367, 603
LweI	GCATC	3 cut(s)	214, 232, 853
MaeI	CTAG	2 cut(s)	299, 593
MaeII	ACGT	3 cut(s)	313, 579, 706
MaeIII	GTNAC	4 cut(s)	294, 582, 639, 775
MalI	GATC	2 cut(s)	599, 659
MboI	GATC	2 cut(s)	597, 657
MboII	GAAGA	4 cut(s)	104, 339, 654, 851
MseI	TTAA	3 cut(s)	326, 668, 737
MspA1I	CMGCKG	1 cut(s)	616
MspI	CCGG	2 cut(s)	637, 819
MspR9I	CCNGG	4 cut(s)	56, 425, 819, 836
MvaI	CCWGG	3 cut(s)	56, 425, 836
MwoI	GCNNNNNNNGC	5 cut(s)	23, 65, 131, 488, 543
NciI	CCSGG	1 cut(s)	819
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	597, 657
NlaIII	CATG	5 cut(s)	110, 216, 263, 755, 855
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	775
NspI	RCATGY	2 cut(s)	263, 855
PagI	TCATGA	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	1 cut(s)	851
PciSI	GCTCTTC	1 cut(s)	834
PfeI	GAWTC	2 cut(s)	653, 679
PkrI	GCNGC	3 cut(s)	127, 382, 618
Ppu21I	YACGTR	1 cut(s)	314
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	1 cut(s)	851
PshBI	ATTAAT	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	3 cut(s)	54, 423, 834
PspEI	GGTNACC	1 cut(s)	775
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	3 cut(s)	54, 423, 834
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	4 cut(s)	181, 341, 634, 821
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	621
PvuII	CAGCTG	1 cut(s)	616
RsaI	GTAC	3 cut(s)	32, 264, 771
RsaNI	GTAC	3 cut(s)	31, 263, 770
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	326, 668, 737
SatI	GCNGC	3 cut(s)	126, 381, 617
Sau3AI	GATC	2 cut(s)	597, 657
Sau96I	GGNCC	4 cut(s)	181, 341, 634, 821
ScrFI	CCNGG	4 cut(s)	56, 425, 819, 836
SfaNI	GCATC	3 cut(s)	214, 232, 853
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	181, 634
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	306, 767
SspMI	CTAG	2 cut(s)	299, 593
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	4 cut(s)	54, 423, 817, 834
StyI	CCWWGG	2 cut(s)	212, 824
TaaI	ACNGT	5 cut(s)	9, 77, 267, 692, 790
TaiI	ACGT	3 cut(s)	316, 582, 709
TaqI	TCGA	2 cut(s)	42, 656
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	653, 679
Tru1I	TTAA	3 cut(s)	326, 668, 737
Tru9I	TTAA	3 cut(s)	326, 668, 737
TscAI	CASTG	3 cut(s)	93, 697, 795
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	3 cut(s)	125, 380, 616
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	4 cut(s)	95, 132, 545, 654
TspRI	CASTG	3 cut(s)	93, 697, 795
VpaK11BI	GGWCC	2 cut(s)	181, 634
VspI	ATTAAT	1 cut(s)	668
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	2 cut(s)	263, 855
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	2 cut(s)	299, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.