Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Reverse (-)

71171026 .. 71174907

Gene Structure 3882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG411600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCACCCTTCAAAGCTCTGGAGCTAGAGTACCCAATAATCGACTCCAATTTCCAGACTTTTTGCGCCTCACATGGCATTCTCTCAGTGGAAGATTTCCTCATTCACGACCTGTATGAGTTGGCTGCGTTTGCAAAACAACAGCCCACCTCGGAAAAACTAGAGCAGGGGATTACCCAGATCCTATCTATTATTGATGAGCAGCACCAACCATGGGTGAATGGTATGGAACTTTTAGATGATACTCTACATAGGAAACATGTAATTCCAACTGGGTGTGAAGGGGTTGATTTGTTACTGGGAGGTGGATTACATGAGGGACAATTAACTGAACTTGTTGGGCCGTCATCTTCTGGTAAAACGCAAGTCTGCCTGCTTGCTGCCTCATATCTTGCATCAAAGCACATGGGTACTGTTGTATACCTAGACACAGGAAACTCTTTCTCCACCCAACGAATTGCAGAGTTTGTTGGTCGATTCTCTAACCACATGGCAGGCCATAGGAATTTTCAGAAAGTAATGAACAACATCTTGTGCCATTCCGTGTTTGACATCTTTACAATGTTCAATGTGTTACATCAGCTGGAGTTCAATTTGAAATCTCAGCTGCAGAAAGGAGGGCAGGTGCGGTTGCTTATTGTTGATTCGATCTCTTCACTAATTACCCCAATTCTTGGGAATATAGGTTCACAGGGTATTACATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

235

Amino Acids

25.91

Weight (kDa)

5.58

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	76 - 149	5.5e-07	RecA N-terminal domain
Rad51	PF08423	89 - 220	5.9e-13	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	420
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	505
AfaI	GTAC	2 cut(s)	32, 412
AfiI	CCNNNNNNNGG	2 cut(s)	214, 674
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	13, 568, 592, 598
AloI	GAACNNNNNNTCC	2 cut(s)	670, 702
AluBI	AGCT	4 cut(s)	17, 25, 583, 607
AluI	AGCT	4 cut(s)	17, 25, 583, 607
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	341, 496
ApeKI	GCWGC	4 cut(s)	125, 202, 380, 607
ApoI	RAATTY	1 cut(s)	505
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	4 cut(s)	112, 214, 367, 594
BceAI	ACGGC	1 cut(s)	328
BfaI	CTAG	3 cut(s)	26, 161, 425
BfmI	CTRYAG	1 cut(s)	608
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	4 cut(s)	126, 203, 381, 608
BlsI	GCNGC	4 cut(s)	127, 204, 382, 609
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	2 cut(s)	282, 308
BmsI	GCATC	1 cut(s)	404
BmuI	ACTGGG	2 cut(s)	282, 308
BpmI	CTGGAG	2 cut(s)	41, 605
BsaJI	CCNNGG	2 cut(s)	150, 212
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 428, 458, 609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 674
Bse1I	ACTGG	2 cut(s)	277, 303
BseDI	CCNNGG	2 cut(s)	150, 212
BseLI	CCNNNNNNNGG	2 cut(s)	214, 674
BseMII	CTCAG	2 cut(s)	99, 617
BseNI	ACTGG	2 cut(s)	277, 303
BseXI	GCAGC	4 cut(s)	112, 214, 367, 594
BshFI	GGCC	2 cut(s)	343, 498
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	214, 674
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	343, 498
Bsp143I	GATC	2 cut(s)	180, 648
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	2 cut(s)	343, 498
BspCNI	CTCAG	2 cut(s)	98, 616
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	277, 303
BssECI	CCNNGG	2 cut(s)	150, 212
BssMI	GATC	2 cut(s)	180, 648
BssNAI	GTATAC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	212
Bst1107I	GTATAC	1 cut(s)	421
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	658
BstC8I	GCNNGC	3 cut(s)	374, 378, 496
BstDEI	CTNAG	2 cut(s)	85, 603
BstDSI	CCRYGG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	183, 651
BstMBI	GATC	2 cut(s)	180, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	608
BstV1I	GCAGC	4 cut(s)	112, 214, 367, 594
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZ17I	GTATAC	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	343, 498
BtgI	CCRYGG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	3 cut(s)	374, 378, 496
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	31, 411
CviAII	CATG	6 cut(s)	74, 213, 260, 314, 406, 490
CviJI	RGCY	8 cut(s)	17, 25, 125, 145, 343, 498, 583, 607
CviKI_1	RGCY	8 cut(s)	17, 25, 125, 145, 343, 498, 583, 607
CviQI	GTAC	2 cut(s)	31, 411
DdeI	CTNAG	2 cut(s)	85, 603
DpnI	GATC	2 cut(s)	182, 650
DpnII	GATC	2 cut(s)	180, 648
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	6 cut(s)	77, 216, 263, 317, 409, 493
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	6 cut(s)	73, 212, 259, 313, 405, 489
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	126, 203, 381, 608
Fsp4HI	GCNGC	4 cut(s)	126, 203, 381, 608
FspBI	CTAG	3 cut(s)	26, 161, 425
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	4 cut(s)	126, 203, 381, 608
GsuI	CTGGAG	2 cut(s)	41, 605
HaeIII	GGCC	2 cut(s)	343, 498
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	6 cut(s)	77, 216, 263, 317, 409, 493
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	3 cut(s)	44, 477, 644
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	421, 689
Hpy188I	TCNGA	2 cut(s)	154, 513
Hpy188III	TCNNGA	3 cut(s)	20, 55, 107
Hpy8I	GTNNAC	2 cut(s)	421, 689
HpyAV	CCTTC	2 cut(s)	19, 275
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	134, 395, 461, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	85, 603
Hsp92II	CATG	6 cut(s)	77, 216, 263, 317, 409, 493
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	180, 648
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	4 cut(s)	112, 214, 367, 594
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	3 cut(s)	26, 161, 425
MaeIII	GTNAC	2 cut(s)	294, 573
MalI	GATC	2 cut(s)	182, 650
MboI	GATC	2 cut(s)	180, 648
MboII	GAAGA	3 cut(s)	104, 342, 645
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	8 cut(s)	49, 264, 323, 456, 505, 592, 660, 669
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	7 cut(s)	79, 110, 160, 296, 310, 394, 611
MseI	TTAA	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	583, 607
Mva1269I	GAATGC	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	180, 648
NlaIII	CATG	6 cut(s)	77, 216, 263, 317, 409, 493
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	613
PciI	ACATGT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	477, 644
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	4 cut(s)	127, 204, 382, 609
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PscI	ACATGT	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	2 cut(s)	583, 607
RsaI	GTAC	2 cut(s)	32, 412
RsaNI	GTAC	2 cut(s)	31, 411
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	4 cut(s)	126, 203, 381, 608
Sau3AI	GATC	2 cut(s)	180, 648
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	38
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	608
Sse9I	AATT	8 cut(s)	49, 264, 323, 456, 505, 592, 660, 669
SsiI	CCGC	1 cut(s)	628
SspMI	CTAG	3 cut(s)	26, 161, 425
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	42, 475, 647
TasI	AATT	8 cut(s)	49, 264, 323, 456, 505, 592, 660, 669
TfiI	GAWTC	2 cut(s)	477, 644
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	4 cut(s)	125, 202, 380, 607
TspDTI	ATGAA	1 cut(s)	536
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	674
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	3 cut(s)	26, 161, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.