Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Forward (+)

10381604 .. 10384555

Gene Structure 2952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1115100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCACCCTTGAAATCTCTGGAGGCAGAGCACCCAGTAATCGACTCCAATTTCCAGACCTTTTGCGCCTCCCATGGCATCTTCTCAGTGGAAGAATTCCTCATTCATGACCTCGATGAATTAGCAGGTGCTGCTCAGCAACATCCCACATGTGAAAAGCTAAAGCAGGGAATCACTGAGGTCCTCTCTACCATTGATTCTCAGCACCAGCCATGGTTGAATGGTATGGAGCTTTTAGATGATGTTTTGCATAACAAACATGTATTATCAACTGGGTGTGAAGGGATTGATTTGTTACTCGGAGGCGGATTGCGTGAGGGACAGGTAACTGAACTTGTTGGTCCGTCTACCTCTGGTAAAACCCAAGTTTGCCTACTATCTGCTGCAAATGTTGCAACGAAGCACATGGGTACTGTTGTCTACCTGGACACAGGAAACTCGTTCTCACCTGAACGAATTGTGCATTTTGTTGGTGATATCTCTAACCATGCCTTTGATCAGGCTGGACAAAGAGTTTTTCAGAAAGTAATGAACAACATTTTATGCCATCATGTGTTTGACATTTTTACAATGTTCAATCTCTTACACCAGCTAGAGTTCAGTTTGCCATCTCAGTTCCAGATGCAGAAAGGAGAGCAGGTGCGGTTGCTTATTGTTGATTCGATCTCTTCACTAATCACCCCGATTCTTGGGAACAGTGGTTCACAGGGGCGTGCTTTGATGATATCTGCTGGATATCTGTTAAAGAAGTTAGCACACGAGCATAATCTTGCAGTACTGGTGACCAATCACACGGTGGGTGGGGAGAAAGGTATTCCAAAACCAGCTCTTGGACAGACCTGGAAGAGCATTCCACATGTGAGGCTTCTGCTTTCCGGTGATCAGGGAAATAGTACCCGGACTATTTCTGTGCTAAGACACTCATCTATGGCTTCTGGCAAGTCTACAAGGTTTACAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

321

Amino Acids

34.87

Weight (kDa)

6.29

Isoelectric Point (pI)

22.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	76 - 160	8.8e-08	RecA N-terminal domain
Rad51	PF08423	89 - 294	4.7e-18	Rad51
AAA_25	PF13481	98 - 265	4.4e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	116, 628
Acc36I	ACCTGC	2 cut(s)	116, 628
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccI	GTMKAC	3 cut(s)	347, 420, 944
AciI	CCGC	2 cut(s)	306, 643
AcsI	RAATTY	1 cut(s)	95
AdeI	CACNNNGTG	1 cut(s)	796
AfaI	GTAC	3 cut(s)	412, 777, 895
AfiI	CCNNNNNNNGG	2 cut(s)	689, 830
AflIII	ACRYGT	3 cut(s)	149, 259, 856
AgsI	TTSAA	3 cut(s)	13, 220, 577
AjnI	CCWGG	2 cut(s)	423, 839
AloI	GAACNNNNNNTCC	2 cut(s)	685, 717
AluBI	AGCT	4 cut(s)	160, 232, 592, 827
AluI	AGCT	4 cut(s)	160, 232, 592, 827
Alw21I	GWGCWC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	131, 383
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	181, 341
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	5 cut(s)	438, 485, 670, 793, 890
AvaII	GGWCC	2 cut(s)	181, 341
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	118, 370
BccI	CCATC	2 cut(s)	555, 616
BciT130I	CCWGG	2 cut(s)	425, 841
BclI	TGATCA	2 cut(s)	496, 880
BcnI	CCSGG	1 cut(s)	898
BfaI	CTAG	1 cut(s)	593
BfuAI	ACCTGC	2 cut(s)	116, 628
BisI	GCNGC	2 cut(s)	132, 384
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	2 cut(s)	133, 385
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	3 cut(s)	425, 841, 898
Bme18I	GGWCC	2 cut(s)	181, 341
BmgT120I	GGNCC	2 cut(s)	181, 341
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	425, 841, 898
BmrI	ACTGGG	2 cut(s)	29, 282
BmsI	GCATC	2 cut(s)	87, 612
BmuI	ACTGGG	2 cut(s)	29, 282
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	73, 212
BsaWI	WCCGGW	1 cut(s)	875
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 830
Bse1I	ACTGG	3 cut(s)	35, 277, 783
BseBI	CCWGG	2 cut(s)	425, 841
BseDI	CCNNGG	2 cut(s)	73, 212
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	689, 830
BseMII	CTCAG	5 cut(s)	99, 149, 168, 215, 626
BseNI	ACTGG	3 cut(s)	35, 277, 783
BseXI	GCAGC	2 cut(s)	118, 370
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	876, 898
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	689, 830
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	496, 663, 880
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	2 cut(s)	73, 212
BspACI	CCGC	2 cut(s)	306, 643
BspCNI	CTCAG	5 cut(s)	98, 148, 169, 214, 625
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	116, 628
BspQI	GCTCTTC	1 cut(s)	839
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	35, 277, 783
BssECI	CCNNGG	2 cut(s)	73, 212
BssMI	GATC	3 cut(s)	496, 663, 880
BssSI	CACGAG	1 cut(s)	758
BssT1I	CCWWGG	2 cut(s)	73, 212
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	2 cut(s)	425, 841
Bst4CI	ACNGT	3 cut(s)	415, 698, 796
Bst6I	CTCTTC	2 cut(s)	673, 839
BstAPI	GCANNNNNTGC	2 cut(s)	131, 392
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	6 cut(s)	85, 135, 177, 201, 612, 914
BstDSI	CCRYGG	2 cut(s)	73, 212
BstEII	GGTNACC	1 cut(s)	781
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	3 cut(s)	499, 666, 883
BstMBI	GATC	3 cut(s)	496, 663, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 392
BstNI	CCWGG	2 cut(s)	425, 841
BstNSI	RCATGY	3 cut(s)	153, 263, 860
BstPI	GGTNACC	1 cut(s)	781
BstSCI	CCNGG	3 cut(s)	423, 839, 896
BstV1I	GCAGC	2 cut(s)	118, 370
BtgI	CCRYGG	2 cut(s)	73, 212
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	93, 174, 703
BveI	ACCTGC	2 cut(s)	116, 628
Cac8I	GCNNGC	1 cut(s)	714
CaiI	CAGNNNCTG	1 cut(s)	131
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	181, 341
Csp6I	GTAC	3 cut(s)	411, 776, 894
CviAII	CATG	9 cut(s)	74, 107, 150, 213, 260, 406, 488, 551, 857
CviJI	RGCY	8 cut(s)	160, 211, 232, 503, 592, 827, 865, 932
CviKI_1	RGCY	8 cut(s)	160, 211, 232, 503, 592, 827, 865, 932
CviQI	GTAC	3 cut(s)	411, 776, 894
DdeI	CTNAG	6 cut(s)	85, 135, 177, 201, 612, 914
DpnI	GATC	3 cut(s)	498, 665, 882
DpnII	GATC	3 cut(s)	496, 663, 880
DraIII	CACNNNGTG	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	673, 839
EarI	CTCTTC	2 cut(s)	673, 839
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	73, 212
Eco32I	GATATC	3 cut(s)	478, 726, 737
Eco47I	GGWCC	2 cut(s)	181, 341
Eco91I	GGTNACC	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	181
EcoO65I	GGTNACC	1 cut(s)	781
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	2 cut(s)	423, 839
EcoRV	GATATC	3 cut(s)	478, 726, 737
EcoT14I	CCWWGG	2 cut(s)	73, 212
ErhI	CCWWGG	2 cut(s)	73, 212
FaeI	CATG	9 cut(s)	77, 110, 153, 216, 263, 409, 491, 554, 860
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	9 cut(s)	73, 106, 149, 212, 259, 405, 487, 550, 856
FbaI	TGATCA	2 cut(s)	496, 880
FblI	GTMKAC	3 cut(s)	347, 420, 944
Fnu4HI	GCNGC	2 cut(s)	132, 384
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	132, 384
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	132, 384
GsuI	CTGGAG	1 cut(s)	41
HapII	CCGG	2 cut(s)	876, 898
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	9 cut(s)	77, 110, 153, 216, 263, 409, 491, 554, 860
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	5 cut(s)	44, 171, 197, 659, 685
HpaII	CCGG	2 cut(s)	876, 898
HphI	GGTGA	5 cut(s)	438, 485, 670, 793, 890
Hpy166II	GTNNAC	5 cut(s)	348, 421, 704, 945, 954
Hpy188I	TCNGA	2 cut(s)	302, 522
Hpy188III	TCNNGA	4 cut(s)	20, 55, 107, 619
Hpy8I	GTNNAC	5 cut(s)	348, 421, 704, 945, 954
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	415, 698, 796
HpyCH4V	TGCA	6 cut(s)	250, 386, 395, 463, 625, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 392
HpyF3I	CTNAG	6 cut(s)	85, 135, 177, 201, 612, 914
Hsp92II	CATG	9 cut(s)	77, 110, 153, 216, 263, 409, 491, 554, 860
HspAI	GCGC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	496, 880
Kzo9I	GATC	3 cut(s)	496, 663, 880
LguI	GCTCTTC	1 cut(s)	839
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	118, 370
LweI	GCATC	2 cut(s)	87, 612
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	3 cut(s)	294, 325, 781
MalI	GATC	3 cut(s)	498, 665, 882
MboI	GATC	3 cut(s)	496, 663, 880
MboII	GAAGA	4 cut(s)	73, 104, 660, 856
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	5 cut(s)	49, 95, 119, 456, 957
MlyI	GAGTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	743
MspI	CCGG	2 cut(s)	876, 898
MspR9I	CCNGG	3 cut(s)	425, 841, 898
Mva1269I	GAATGC	1 cut(s)	849
MvaI	CCWGG	2 cut(s)	425, 841
MwoI	GCNNNNNNNGC	2 cut(s)	131, 392
NciI	CCSGG	1 cut(s)	898
NcoI	CCATGG	2 cut(s)	73, 212
NdeII	GATC	3 cut(s)	496, 663, 880
NlaIII	CATG	9 cut(s)	77, 110, 153, 216, 263, 409, 491, 554, 860
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	781
NspI	RCATGY	3 cut(s)	153, 263, 860
PagI	TCATGA	1 cut(s)	106
PaqCI	CACCTGC	2 cut(s)	116, 628
PciI	ACATGT	3 cut(s)	149, 259, 856
PciSI	GCTCTTC	1 cut(s)	839
PctI	GAATGC	1 cut(s)	849
PfeI	GAWTC	4 cut(s)	171, 197, 659, 685
PflMI	CCANNNNNTGG	1 cut(s)	830
PkrI	GCNGC	2 cut(s)	133, 385
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	3 cut(s)	149, 259, 856
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	423, 839
PspEI	GGTNACC	1 cut(s)	781
PspGI	CCWGG	2 cut(s)	423, 839
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	181, 341
PspPPI	RGGWCCY	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	412, 777, 895
RsaNI	GTAC	3 cut(s)	411, 776, 894
SapI	GCTCTTC	1 cut(s)	839
SaqAI	TTAA	1 cut(s)	743
SatI	GCNGC	2 cut(s)	132, 384
Sau3AI	GATC	3 cut(s)	496, 663, 880
Sau96I	GGNCC	2 cut(s)	181, 341
ScaI	AGTACT	1 cut(s)	777
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	425, 841, 898
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	87, 612
SinI	GGWCC	2 cut(s)	181, 341
Sse9I	AATT	5 cut(s)	49, 95, 119, 456, 957
SsiI	CCGC	2 cut(s)	306, 643
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	3 cut(s)	423, 839, 896
StyI	CCWWGG	2 cut(s)	73, 212
TaaI	ACNGT	3 cut(s)	415, 698, 796
TaqI	TCGA	3 cut(s)	42, 114, 662
TasI	AATT	5 cut(s)	49, 95, 119, 456, 957
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	4 cut(s)	171, 197, 659, 685
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TscAI	CASTG	3 cut(s)	93, 181, 703
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	2 cut(s)	131, 383
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	95, 132, 545
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	3 cut(s)	93, 181, 703
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	181, 341
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	3 cut(s)	153, 263, 860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	793
XmiI	GTMKAC	3 cut(s)	347, 420, 944
XspI	CTAG	1 cut(s)	593
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.