Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Reverse (-)

30104448 .. 30108583

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34810.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCACCCCTCAAAGCTCTGGAGCTAGAGTACCCAATAATCGACTCCAATTTCCAGGCTTTTTGTGCCTCACATGGCATCCTCTCAGTGGAAGATTTCCTCATTCATGACATGTATGAGTTGACTGCGTTCGCAAAACAACAGCCCAACTCTGAAAAACTCAAGCAGCACCCACCATGGGTGAATGGTATGGAGCTTTTAGATGATGCTCTACATAGGAAACATGTACTTCCAACTGGGTGTGAAGGGATTGATTTGTTATTGGGAGGTGGATTACGTGAGGGACAATTAACTGAACTCGTTGGGCCGTCATCTTCTGGTAAAACACAAGTCTGCCTGCTTGCTGCTTCAAATCTTGCATCGCAGCACATGGGTACTGTTGTATACCTAGACACAGGAAACTCTTTCTCCACCCAACGAATTGCAGAGTTTGTTGGTCGATTCTCCAACCACACGTTTAGTCAGGCAGGCCAAAGGAATTTTCAGAAAGCAATGAACAACATCTTGTGCCATTCCGTGTTTGACATCTTTACAATGTTCAATGTGTTACATCGGCTGGAGTTCAGTTTGAAATCTCAGAAAGGAGGGCAGGTGCAGTTGCTTATTGTTGATTCGATTTCTTCACTAATTACGCCAATTCTTGGGAACACAAGTTCACAGGGACGTGCTTTGATGACATCTGCTGGATATTTGTTAAAGAAATTGGCACATGAGCATAATATTGCGGTACTGGTGACCAATCACACAGTAGGTGGAGAAAAAGGTATTGCAAAACCAGCTCTTGGCCAGACCTGGAAGAGCGTAGCACATGTGAGGCTTCTGCTTTCCGCTGACCATGGAAATGATACCCGGAGTATTTCAGTGCTAAAACACCCGTCTATGGCTTCTGGCAAGGTTGCGAGATTTAGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

305

Amino Acids

33.16

Weight (kDa)

8.64

Isoelectric Point (pI)

22.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	39 - 115	7.5e-07	RecA N-terminal domain
Rad51	PF08423	52 - 271	9e-19	Rad51
DnaB_C	PF03796	52 - 220	8.8e-06	DnaB-like helicase C terminal domain
ATPase	PF06745	53 - 265	1.5e-06	KaiC
AAA_25	PF13481	62 - 224	3.1e-08	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	641, 782
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	2 cut(s)	725, 828
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	1 cut(s)	478
AfaI	GTAC	4 cut(s)	32, 228, 376, 729
AfiI	CCNNNNNNNGG	5 cut(s)	88, 178, 641, 782, 880
AflIII	ACRYGT	4 cut(s)	111, 223, 453, 808
AgsI	TTSAA	3 cut(s)	351, 541, 571
AjiI	CACGTC	1 cut(s)	665
AjnI	CCWGG	2 cut(s)	54, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
AloI	GAACNNNNNNTCC	2 cut(s)	637, 669
AluBI	AGCT	4 cut(s)	17, 25, 196, 779
AluI	AGCT	4 cut(s)	17, 25, 196, 779
AoxI	GGCC	3 cut(s)	305, 469, 784
ApeKI	GCWGC	3 cut(s)	166, 344, 364
ApoI	RAATTY	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	850
AsuHPI	GGTGA	2 cut(s)	193, 745
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BalI	TGGCCA	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	178, 331, 376
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	56, 793
BcnI	CCSGG	1 cut(s)	850
BfaI	CTAG	2 cut(s)	26, 389
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	3 cut(s)	167, 345, 365
BlsI	GCNGC	3 cut(s)	168, 346, 366
Bme1390I	CCNGG	3 cut(s)	56, 793, 850
BmgBI	CACGTC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	56, 793, 850
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	3 cut(s)	87, 196, 368
BmuI	ACTGGG	1 cut(s)	246
BpmI	CTGGAG	2 cut(s)	41, 578
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	850
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	176, 835
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 392, 422, 576, 606
Bsc4I	CCNNNNNNNGG	5 cut(s)	88, 178, 641, 782, 880
Bse1I	ACTGG	2 cut(s)	241, 735
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	56, 793
BseDI	CCNNGG	2 cut(s)	176, 835
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	5 cut(s)	88, 178, 641, 782, 880
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	2 cut(s)	99, 590
BseNI	ACTGG	2 cut(s)	241, 735
BseXI	GCAGC	3 cut(s)	178, 331, 376
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	307, 471, 786
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	850
BslFI	GGGAC	2 cut(s)	297, 675
BslI	CCNNNNNNNGG	5 cut(s)	88, 178, 641, 782, 880
BsmFI	GGGAC	2 cut(s)	297, 675
BsnI	GGCC	3 cut(s)	307, 471, 786
Bsp19I	CCATGG	2 cut(s)	176, 835
BspACI	CCGC	2 cut(s)	725, 828
BspANI	GGCC	3 cut(s)	307, 471, 786
BspCNI	CTCAG	2 cut(s)	98, 589
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	580
BspQI	GCTCTTC	1 cut(s)	791
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	241, 735
BssECI	CCNNGG	2 cut(s)	176, 835
BssNAI	GTATAC	1 cut(s)	385
BssT1I	CCWWGG	2 cut(s)	176, 835
Bst1107I	GTATAC	1 cut(s)	385
Bst2UI	CCWGG	2 cut(s)	56, 793
Bst4CI	ACNGT	2 cut(s)	379, 748
Bst6I	CTCTTC	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	3 cut(s)	338, 342, 469
BstDEI	CTNAG	2 cut(s)	85, 576
BstDSI	CCRYGG	2 cut(s)	176, 835
BstEII	GGTNACC	1 cut(s)	733
BstF5I	GGATG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 776
BstNI	CCWGG	2 cut(s)	56, 793
BstNSI	RCATGY	3 cut(s)	115, 227, 812
BstPI	GGTNACC	1 cut(s)	733
BstSCI	CCNGG	3 cut(s)	54, 791, 848
BstV1I	GCAGC	3 cut(s)	178, 331, 376
BstZ17I	GTATAC	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	307, 471, 786
BtgI	CCRYGG	2 cut(s)	176, 835
BtgZI	GCGATG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	93, 867
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	3 cut(s)	338, 342, 469
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	4 cut(s)	31, 227, 375, 728
CviAII	CATG	9 cut(s)	74, 107, 112, 177, 224, 370, 710, 809, 836
CviQI	GTAC	4 cut(s)	31, 227, 375, 728
DdeI	CTNAG	2 cut(s)	85, 576
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
Eco130I	CCWWGG	2 cut(s)	176, 835
Eco91I	GGTNACC	1 cut(s)	733
EcoO65I	GGTNACC	1 cut(s)	733
EcoRII	CCWGG	2 cut(s)	54, 791
EcoT14I	CCWWGG	2 cut(s)	176, 835
ErhI	CCWWGG	2 cut(s)	176, 835
FaeI	CATG	9 cut(s)	77, 110, 115, 180, 227, 373, 713, 812, 839
FaqI	GGGAC	2 cut(s)	297, 675
FatI	CATG	9 cut(s)	73, 106, 111, 176, 223, 369, 709, 808, 835
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	167, 345, 365
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	167, 345, 365
FspBI	CTAG	2 cut(s)	26, 389
GluI	GCNGC	3 cut(s)	167, 345, 365
GsuI	CTGGAG	2 cut(s)	41, 578
HaeIII	GGCC	3 cut(s)	307, 471, 786
HapII	CCGG	1 cut(s)	850
Hin1II	CATG	9 cut(s)	77, 110, 115, 180, 227, 373, 713, 812, 839
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	44, 441, 611
HpaII	CCGG	1 cut(s)	850
HphI	GGTGA	2 cut(s)	193, 745
Hpy166II	GTNNAC	3 cut(s)	123, 385, 656
Hpy188I	TCNGA	3 cut(s)	154, 486, 579
Hpy188III	TCNNGA	2 cut(s)	20, 107
Hpy8I	GTNNAC	3 cut(s)	123, 385, 656
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	379, 748
HpyCH4IV	ACGT	3 cut(s)	277, 455, 664
HpyCH4V	TGCA	4 cut(s)	359, 425, 595, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 776
HpyF3I	CTNAG	2 cut(s)	85, 576
HpySE526I	ACGT	3 cut(s)	277, 455, 664
Hsp92II	CATG	9 cut(s)	77, 110, 115, 180, 227, 373, 713, 812, 839
LguI	GCTCTTC	1 cut(s)	791
LmnI	GCTCC	2 cut(s)	22, 193
Lsp1109I	GCAGC	3 cut(s)	178, 331, 376
LweI	GCATC	3 cut(s)	87, 196, 368
MaeI	CTAG	2 cut(s)	26, 389
MaeII	ACGT	3 cut(s)	277, 455, 664
MaeIII	GTNAC	2 cut(s)	546, 733
MboII	GAAGA	4 cut(s)	104, 306, 612, 808
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	7 cut(s)	49, 287, 420, 478, 627, 636, 701
MluNI	TGGCCA	1 cut(s)	786
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	2 cut(s)	257, 471
MnlI	CCTC	8 cut(s)	20, 79, 92, 110, 260, 274, 578, 807
Mox20I	TGGCCA	1 cut(s)	786
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	2 cut(s)	290, 695
MslI	CAYNNNNRTG	1 cut(s)	840
Msp20I	TGGCCA	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	1 cut(s)	850
MspR9I	CCNGG	3 cut(s)	56, 793, 850
MvaI	CCWGG	2 cut(s)	56, 793
MwoI	GCNNNNNNNGC	2 cut(s)	65, 776
NciI	CCSGG	1 cut(s)	850
NcoI	CCATGG	2 cut(s)	176, 835
NlaIII	CATG	9 cut(s)	77, 110, 115, 180, 227, 373, 713, 812, 839
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	733
NspI	RCATGY	3 cut(s)	115, 227, 812
PagI	TCATGA	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	580
PciI	ACATGT	3 cut(s)	111, 223, 808
PciSI	GCTCTTC	1 cut(s)	791
PfeI	GAWTC	2 cut(s)	441, 611
PflMI	CCANNNNNTGG	2 cut(s)	641, 782
PkrI	GCNGC	3 cut(s)	168, 346, 366
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	278
PscI	ACATGT	3 cut(s)	111, 223, 808
Psp6I	CCWGG	2 cut(s)	54, 791
PspEI	GGTNACC	1 cut(s)	733
PspGI	CCWGG	2 cut(s)	54, 791
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	305
RsaI	GTAC	4 cut(s)	32, 228, 376, 729
RsaNI	GTAC	4 cut(s)	31, 227, 375, 728
RseI	CAYNNNNRTG	1 cut(s)	840
SapI	GCTCTTC	1 cut(s)	791
SaqAI	TTAA	2 cut(s)	290, 695
SatI	GCNGC	3 cut(s)	167, 345, 365
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	56, 793, 850
SfaNI	GCATC	3 cut(s)	87, 196, 368
SmiMI	CAYNNNNRTG	1 cut(s)	840
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	7 cut(s)	49, 287, 420, 478, 627, 636, 701
SsiI	CCGC	2 cut(s)	725, 828
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	2 cut(s)	26, 389
StyD4I	CCNGG	3 cut(s)	54, 791, 848
StyI	CCWWGG	2 cut(s)	176, 835
TaaI	ACNGT	2 cut(s)	379, 748
TaiI	ACGT	3 cut(s)	280, 458, 667
TaqI	TCGA	3 cut(s)	42, 439, 614
TasI	AATT	7 cut(s)	49, 287, 420, 478, 627, 636, 701
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	441, 611
Tru1I	TTAA	2 cut(s)	290, 695
Tru9I	TTAA	2 cut(s)	290, 695
TscAI	CASTG	2 cut(s)	93, 867
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	3 cut(s)	166, 344, 364
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	2 cut(s)	95, 509
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	2 cut(s)	93, 867
Van91I	CCANNNNNTGG	2 cut(s)	641, 782
XapI	RAATTY	1 cut(s)	478
XceI	RCATGY	3 cut(s)	115, 227, 812
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	26, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.