Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000472.1

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Forward (+)

154274 .. 157069

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000472.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggcacccttcaaagctctggagctagagtacccaataatcgactccaatttccagactttttgcgcctcacatggcattctctcagtggaagatttcctcattcacgacctgtatgagttggctgcgtttgcaaaacaacagcccacctcggaaaaactagagcaggggattacccagatcctatctattattgatgagcagcaccaaccatgggtgaatggtatggaacttttagatgatactctacataggaagcatgtaattccaactgggtgtgaaggggttgatttgttactgggaggtggattacatgagggacaattaactgaacttgttgggccgtcatcttctggtaaaacgcaacaatacttctgtgctgtcatgaacgtggtgagccctgatgagctcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

138

Amino Acids

15.23

Weight (kDa)

4.47

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	4 cut(s)	17, 25, 409, 414
AluI	AGCT	4 cut(s)	17, 25, 409, 414
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	125, 202
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	229, 406
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	401, 411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	112, 214
BceAI	ACGGC	1 cut(s)	328
BfaI	CTAG	3 cut(s)	26, 161, 415
BisI	GCNGC	2 cut(s)	126, 203
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	2 cut(s)	127, 204
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	2 cut(s)	282, 308
BmuI	ACTGGG	2 cut(s)	282, 308
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	150, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	277, 303
BseDI	CCNNGG	2 cut(s)	150, 212
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	277, 303
BseXI	GCAGC	2 cut(s)	112, 214
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	411
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	401, 411
Bsp143I	GATC	1 cut(s)	180
Bsp1720I	GCTNAGC	1 cut(s)	410
Bsp19I	CCATGG	1 cut(s)	212
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	277, 303
BssECI	CCNNGG	2 cut(s)	150, 212
BssMI	GATC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	85, 410
BstDSI	CCRYGG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	112, 214
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	93
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	5 cut(s)	74, 213, 260, 314, 385
CviJI	RGCY	8 cut(s)	17, 25, 125, 145, 343, 399, 409, 414
CviKI_1	RGCY	8 cut(s)	17, 25, 125, 145, 343, 399, 409, 414
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	85, 410
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	212
Eco24I	GRGCYC	2 cut(s)	401, 411
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	212
EcoT38I	GRGCYC	2 cut(s)	401, 411
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	5 cut(s)	77, 216, 263, 317, 388
FaiI	YATR	8 cut(s)	75, 117, 214, 227, 252, 261, 315, 386
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	5 cut(s)	73, 212, 259, 313, 384
Fnu4HI	GCNGC	2 cut(s)	126, 203
FriOI	GRGCYC	2 cut(s)	401, 411
Fsp4HI	GCNGC	2 cut(s)	126, 203
FspBI	CTAG	3 cut(s)	26, 161, 415
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	2 cut(s)	126, 203
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	77, 216, 263, 317, 388
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	2 cut(s)	229, 406
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	4 cut(s)	20, 55, 107, 385
HpyAV	CCTTC	2 cut(s)	19, 275
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	85, 410
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	5 cut(s)	77, 216, 263, 317, 388
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	8 cut(s)	5, 68, 125, 152, 191, 258, 284, 339
Lsp1109I	GCAGC	2 cut(s)	112, 214
MaeI	CTAG	3 cut(s)	26, 161, 415
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	294
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	104, 342
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	401, 411
MluCI	AATT	3 cut(s)	49, 264, 323
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	5 cut(s)	79, 110, 160, 296, 310
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	5 cut(s)	77, 216, 263, 317, 388
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	263
PagI	TCATGA	1 cut(s)	384
PctI	GAATGC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	127, 204
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	126, 203
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	401, 411
SetI	ASST	8 cut(s)	19, 27, 114, 152, 307, 393, 411, 416
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	3 cut(s)	49, 264, 323
SspMI	CTAG	3 cut(s)	26, 161, 415
SstI	GAGCTC	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	212
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	49, 264, 323
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	2 cut(s)	125, 202
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	3 cut(s)	26, 161, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.