Prupe.6G086100_v2.0.a1

DNA repair protein RAD51 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
5786478 .. 5791071
4594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G086100.7

Sequence Viewer

Length: 1092 bp
ATGTGTTGTGTGGATACTGGAAAGGAGAGCGTGAAAGAAATGGCACCGTTGAAAGCTTTGGAGGCAGAGTACCCAATACTCGACCCCAATTTCCAGGCCTTTTGCGCCTCTCACGGTATTTTCTCAGTGGAAGATTTCCTGATTCATGACCTCTATGAATTAGCTGCATTTGCAGAACAACAGCCTACATCTGAGAAACTAAAGCAGGGCATTACTCAGGTCCTTTCTATTATTGATACTCAGCATCAACCATGGTTGAATGGTATGGAGCTTTTAGATGATGCTCTATATAACAAGCATGTTCTGTCAACCGGGTGTGAAGGAATTGATTTGTTACTTGGGGGCGGATTACGTGAGGGACAATTAACTGAACTTGTTGGGCCATCTTCTTGTGGTAAAACACAAGTTTGCCTACTTGCTGCCTCAAATGTTGCAACGAAGCACATGGGTAATGTTGTATACCTGGACACAGGCAACTCTTTCTCACCCCAACGAATTGCCCAGTTTGTTGGTCATATCGCTGGCCGTGCCTTTGATGAGGCTGGAAAAAGAATTTTTCAGAGGATAATGAACGGCATTGTATGCCATTCTGTGTTTGACATCTTTACAATGTTCAATGTGTTACATCGGCTAGTGATCAATTTTCCATCTCAGCTGCAGAAAGGAGGGCAGGTCCGGATGCTTATTGTTGATTCGATCTCTTCACTAATTACCCCAATTCTTGGGAACAGTGGTTCACAGGGACGCGCCTTGATGATATCTGCTGGGTATATGTTAAAGAAATTAGCACATGAGCATAATGTTGCGGTACTGGTGACCAATCACACAGTGGGTGGGGAAAGAGGTATTCCAAAACCCGCTCTTGGACAGACCTGGAAGAGCATCCCACATGTGAGGCTTCTACTTTCTGGTGATCATGGAAACAATGTCCGGAGTATTTCAGTGCTAAGACACCCATCTATGGATTTCTTCACAGCTGGTACAGATACAAGCGCCATTTCAATGAAGTGGGCGCTAGCAGAGCTCATCAACCACCCAAATGTGCTTAAGAAAGAGGGAGAGGAGATTAATCGAGTCGTTGGAAATAAATGA

Protein Analysis

364

Amino Acids

39.61

Weight (kDa)

6.56

Isoelectric Point (pI)

21.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000794)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 722
AccBSI CCGCTC 1 cut(s) 860
AccI GTMKAC 1 cut(s) 459
AccII CGCG 1 cut(s) 747
AccIII TCCGGA 2 cut(s) 675, 930
AciI CCGC 3 cut(s) 345, 806, 858
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 1 cut(s) 552
AdeI CACNNNGTG 1 cut(s) 829
AfaI GTAC 3 cut(s) 71, 810, 982
AfiI CCNNNNNNNGG 3 cut(s) 722, 863, 961
AflII CTTAAG 1 cut(s) 1046
AflIII ACRYGT 1 cut(s) 889
AgsI TTSAA 4 cut(s) 52, 259, 616, 1002
AjnI CCWGG 3 cut(s) 93, 462, 872
AloI GAACNNNNNNTCC 2 cut(s) 718, 750
AluBI AGCT 6 cut(s) 56, 164, 271, 655, 977, 1024
AluI AGCT 6 cut(s) 56, 164, 271, 655, 977, 1024
Alw21I GWGCWC 1 cut(s) 1026
Aor13HI TCCGGA 2 cut(s) 675, 930
AoxI GGCC 3 cut(s) 96, 380, 523
ApeKI GCWGC 3 cut(s) 164, 419, 655
ApoI RAATTY 1 cut(s) 552
AseI ATTAAT 1 cut(s) 1068
AspLEI GCGC 4 cut(s) 107, 749, 995, 1015
AspS9I GGNCC 3 cut(s) 220, 380, 673
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 477, 826, 923
AsuNHI GCTAGC 1 cut(s) 1015
AvaII GGWCC 2 cut(s) 220, 673
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 1026
Bbv12I GWGCWC 1 cut(s) 1026
BbvI GCAGC 3 cut(s) 151, 406, 642
BccI CCATC 3 cut(s) 391, 655, 964
BceAI ACGGC 2 cut(s) 510, 589
BciT130I CCWGG 3 cut(s) 95, 464, 874
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 2 cut(s) 636, 913
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 2 cut(s) 632, 1016
BfmI CTRYAG 1 cut(s) 656
BfoI RGCGCY 2 cut(s) 996, 1016
BfrI CTTAAG 1 cut(s) 1046
BfuAI ACCTGC 1 cut(s) 661
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 3 cut(s) 165, 420, 656
BlsI GCNGC 3 cut(s) 166, 421, 657
Bme1390I CCNGG 4 cut(s) 95, 313, 464, 874
Bme18I GGWCC 2 cut(s) 220, 673
BmgT120I GGNCC 3 cut(s) 220, 380, 673
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 4 cut(s) 95, 313, 464, 874
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 4 cut(s) 253, 271, 669, 891
BmtI GCTAGC 1 cut(s) 1019
BmuI ACTGGG 1 cut(s) 496
BpuMI CCSGG 1 cut(s) 313
BsaAI YACGTR 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 251
BsaWI WCCGGW 2 cut(s) 675, 930
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 657, 687
Bsc4I CCNNNNNNNGG 3 cut(s) 722, 863, 961
Bse1I ACTGG 3 cut(s) 22, 502, 816
BseAI TCCGGA 2 cut(s) 675, 930
BseBI CCWGG 3 cut(s) 95, 464, 874
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 2 cut(s) 684, 882
BseLI CCNNNNNNNGG 3 cut(s) 722, 863, 961
BseMII CTCAG 5 cut(s) 138, 183, 230, 254, 665
BseNI ACTGG 3 cut(s) 22, 502, 816
BseRI GAGGAG 1 cut(s) 1076
BseXI GCAGC 3 cut(s) 151, 406, 642
BseYI CCCAGC 1 cut(s) 764
Bsh1236I CGCG 1 cut(s) 747
BshFI GGCC 3 cut(s) 98, 382, 525
BshNI GGYRCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 1026
BsiSI CCGG 3 cut(s) 312, 676, 931
BslFI GGGAC 2 cut(s) 372, 756
BslI CCNNNNNNNGG 3 cut(s) 722, 863, 961
BsmFI GGGAC 2 cut(s) 372, 756
BsnI GGCC 3 cut(s) 98, 382, 525
Bsp1286I GDGCHC 1 cut(s) 1026
Bsp13I TCCGGA 2 cut(s) 675, 930
Bsp143I GATC 3 cut(s) 636, 696, 913
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 3 cut(s) 345, 806, 858
BspANI GGCC 3 cut(s) 98, 382, 525
BspCNI CTCAG 5 cut(s) 137, 184, 229, 253, 664
BspEI TCCGGA 2 cut(s) 675, 930
BspFNI CGCG 1 cut(s) 747
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 660
BspMI ACCTGC 1 cut(s) 661
BspOI GCTAGC 1 cut(s) 1019
BspQI GCTCTTC 1 cut(s) 872
BspT107I GGYRCC 1 cut(s) 43
BspTI CTTAAG 1 cut(s) 1046
BsrBI CCGCTC 1 cut(s) 860
BsrI ACTGG 3 cut(s) 22, 502, 816
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 3 cut(s) 636, 696, 913
BssNAI GTATAC 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 251
Bst1107I GTATAC 1 cut(s) 460
Bst2UI CCWGG 3 cut(s) 95, 464, 874
Bst4CI ACNGT 4 cut(s) 48, 116, 731, 829
Bst6I CTCTTC 2 cut(s) 706, 872
BstAFI CTTAAG 1 cut(s) 1046
BstAPI GCANNNNNTGC 1 cut(s) 582
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 523, 1017
BstDEI CTNAG 6 cut(s) 124, 192, 216, 240, 651, 947
BstDSI CCRYGG 1 cut(s) 251
BstEII GGTNACC 1 cut(s) 814
BstF5I GGATG 2 cut(s) 684, 882
BstFNI CGCG 1 cut(s) 747
BstH2I RGCGCY 2 cut(s) 996, 1016
BstHHI GCGC 4 cut(s) 107, 749, 995, 1015
BstKTI GATC 3 cut(s) 639, 699, 916
BstMBI GATC 3 cut(s) 636, 696, 913
BstMWI GCNNNNNNNGC 6 cut(s) 62, 104, 170, 527, 582, 1021
BstNI CCWGG 3 cut(s) 95, 464, 874
BstNSI RCATGY 2 cut(s) 302, 893
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 4 cut(s) 93, 311, 462, 872
BstSFI CTRYAG 1 cut(s) 656
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 151, 406, 642
BstXI CCANNNNNNTGG 1 cut(s) 509
BstZ17I GTATAC 1 cut(s) 460
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 3 cut(s) 98, 382, 525
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 2 cut(s) 684, 882
BtsIMutI CAGTG 4 cut(s) 132, 736, 834, 948
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 2 cut(s) 523, 1017
CciI TCATGA 1 cut(s) 145
CfoI GCGC 4 cut(s) 107, 749, 995, 1015
Cfr13I GGNCC 3 cut(s) 220, 380, 673
CseI GACGC 1 cut(s) 753
Csp6I GTAC 3 cut(s) 70, 809, 981
CviAII CATG 7 cut(s) 146, 252, 299, 445, 791, 890, 917
CviQI GTAC 3 cut(s) 70, 809, 981
DdeI CTNAG 6 cut(s) 124, 192, 216, 240, 651, 947
DpnI GATC 3 cut(s) 638, 698, 915
DpnII GATC 3 cut(s) 636, 696, 913
DraIII CACNNNGTG 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 706, 872
EarI CTCTTC 2 cut(s) 706, 872
EciI GGCGGA 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 1024
Eco130I CCWWGG 1 cut(s) 251
Eco147I AGGCCT 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 1026
Eco32I GATATC 1 cut(s) 759
Eco47I GGWCC 2 cut(s) 220, 673
Eco53kI GAGCTC 1 cut(s) 1024
Eco91I GGTNACC 1 cut(s) 814
EcoICRI GAGCTC 1 cut(s) 1024
EcoO109I RGGNCCY 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 814
EcoRII CCWGG 3 cut(s) 93, 462, 872
EcoRV GATATC 1 cut(s) 759
EcoT14I CCWWGG 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 1026
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 7 cut(s) 149, 255, 302, 448, 794, 893, 920
FaqI GGGAC 2 cut(s) 372, 756
FatI CATG 7 cut(s) 145, 251, 298, 444, 790, 889, 916
FauI CCCGC 1 cut(s) 865
FbaI TGATCA 2 cut(s) 636, 913
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 3 cut(s) 165, 420, 656
FokI GGATG 2 cut(s) 691, 869
FriOI GRGCYC 1 cut(s) 1026
Fsp4HI GCNGC 3 cut(s) 165, 420, 656
FspBI CTAG 2 cut(s) 632, 1016
GlaI GCGC 4 cut(s) 106, 748, 994, 1014
GluI GCNGC 3 cut(s) 165, 420, 656
GsaI CCCAGC 1 cut(s) 768
HaeII RGCGCY 2 cut(s) 996, 1016
HaeIII GGCC 3 cut(s) 98, 382, 525
HapII CCGG 3 cut(s) 312, 676, 931
HgaI GACGC 1 cut(s) 753
HhaI GCGC 4 cut(s) 107, 749, 995, 1015
Hin1II CATG 7 cut(s) 149, 255, 302, 448, 794, 893, 920
Hin6I GCGC 4 cut(s) 105, 747, 993, 1013
HinP1I GCGC 4 cut(s) 105, 747, 993, 1013
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 3 cut(s) 142, 692, 1074
HpaII CCGG 3 cut(s) 312, 676, 931
HphI GGTGA 3 cut(s) 477, 826, 923
Hpy166II GTNNAC 3 cut(s) 309, 460, 737
Hpy188I TCNGA 2 cut(s) 193, 561
Hpy188III TCNNGA 4 cut(s) 139, 146, 676, 931
Hpy8I GTNNAC 3 cut(s) 309, 460, 737
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 4 cut(s) 48, 116, 731, 829
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 4 cut(s) 167, 173, 434, 658
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 104, 170, 527, 582, 1021
HpyF3I CTNAG 6 cut(s) 124, 192, 216, 240, 651, 947
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 7 cut(s) 149, 255, 302, 448, 794, 893, 920
HspAI GCGC 4 cut(s) 105, 747, 993, 1013
Kpn2I TCCGGA 2 cut(s) 675, 930
Ksp22I TGATCA 2 cut(s) 636, 913
Kzo9I GATC 3 cut(s) 636, 696, 913
LguI GCTCTTC 1 cut(s) 872
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 3 cut(s) 151, 406, 642
LweI GCATC 4 cut(s) 253, 271, 669, 891
MaeI CTAG 2 cut(s) 632, 1016
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 3 cut(s) 333, 621, 814
MalI GATC 3 cut(s) 638, 698, 915
MbiI CCGCTC 1 cut(s) 860
MboI GATC 3 cut(s) 636, 696, 913
MboII GAAGA 5 cut(s) 143, 378, 693, 889, 961
MhlI GDGCHC 1 cut(s) 1026
MlyI GAGTC 1 cut(s) 1083
MmeI TCCRAC 1 cut(s) 1060
MroI TCCGGA 2 cut(s) 675, 930
MseI TTAA 4 cut(s) 365, 776, 1047, 1068
MslI CAYNNNNRTG 2 cut(s) 1001, 1038
MspA1I CMGCKG 2 cut(s) 655, 977
MspCI CTTAAG 1 cut(s) 1046
MspI CCGG 3 cut(s) 312, 676, 931
MspR9I CCNGG 4 cut(s) 95, 313, 464, 874
MvaI CCWGG 3 cut(s) 95, 464, 874
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 6 cut(s) 62, 104, 170, 527, 582, 1021
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 251
NdeII GATC 3 cut(s) 636, 696, 913
NheI GCTAGC 1 cut(s) 1015
NlaIII CATG 7 cut(s) 149, 255, 302, 448, 794, 893, 920
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 814
NspI RCATGY 2 cut(s) 302, 893
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 98
PciI ACATGT 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 872
PfeI GAWTC 2 cut(s) 142, 692
PflMI CCANNNNNTGG 1 cut(s) 722
PkrI GCNGC 3 cut(s) 166, 421, 657
PleI GAGTC 1 cut(s) 1082
PpsI GAGTC 1 cut(s) 1082
Ppu21I YACGTR 1 cut(s) 353
PpuMI RGGWCCY 1 cut(s) 220
PscI ACATGT 1 cut(s) 889
PshBI ATTAAT 1 cut(s) 1068
Psp124BI GAGCTC 1 cut(s) 1026
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 3 cut(s) 93, 462, 872
PspEI GGTNACC 1 cut(s) 814
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 3 cut(s) 93, 462, 872
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 3 cut(s) 220, 380, 673
PspPPI RGGWCCY 1 cut(s) 220
PstI CTGCAG 1 cut(s) 660
PvuII CAGCTG 2 cut(s) 655, 977
RsaI GTAC 3 cut(s) 71, 810, 982
RsaNI GTAC 3 cut(s) 70, 809, 981
RseI CAYNNNNRTG 2 cut(s) 1001, 1038
SacI GAGCTC 1 cut(s) 1026
SapI GCTCTTC 1 cut(s) 872
SaqAI TTAA 4 cut(s) 365, 776, 1047, 1068
SatI GCNGC 3 cut(s) 165, 420, 656
Sau3AI GATC 3 cut(s) 636, 696, 913
Sau96I GGNCC 3 cut(s) 220, 380, 673
SchI GAGTC 1 cut(s) 1083
ScrFI CCNGG 4 cut(s) 95, 313, 464, 874
SduI GDGCHC 1 cut(s) 1026
SfaNI GCATC 4 cut(s) 253, 271, 669, 891
SfcI CTRYAG 1 cut(s) 656
SinI GGWCC 2 cut(s) 220, 673
SmiMI CAYNNNNRTG 2 cut(s) 1001, 1038
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 3 cut(s) 345, 806, 858
SspMI CTAG 2 cut(s) 632, 1016
SstI GAGCTC 1 cut(s) 1026
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 4 cut(s) 93, 311, 462, 872
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 4 cut(s) 48, 116, 731, 829
TaiI ACGT 1 cut(s) 355
TaqI TCGA 3 cut(s) 81, 695, 1072
TfiI GAWTC 2 cut(s) 142, 692
Tru1I TTAA 4 cut(s) 365, 776, 1047, 1068
Tru9I TTAA 4 cut(s) 365, 776, 1047, 1068
TscAI CASTG 4 cut(s) 132, 736, 834, 948
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 3 cut(s) 164, 419, 655
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 4 cut(s) 134, 171, 584, 1019
TspRI CASTG 4 cut(s) 132, 736, 834, 948
Van91I CCANNNNNTGG 1 cut(s) 722
Vha464I CTTAAG 1 cut(s) 1046
VpaK11BI GGWCC 2 cut(s) 220, 673
VspI ATTAAT 1 cut(s) 1068
XapI RAATTY 1 cut(s) 552
XceI RCATGY 2 cut(s) 302, 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 632, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.