Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000794

Physical Location & Seq

Genomic Coordinates Reverse (-)

43678939 .. 43687304

Gene Structure 8366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0350700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4065 bp

ATGGCCGGAACTAGCTTGGTCTTCGCTGTTAATCGCCAGAGGTTTCACCTCCCTACTGTTGATCCTTCTACCACTCTGCTCGAGTTTCTCCGTTCCCACACTCGCTTCAAGAGCGTCAAGCTCTCCTGTGGCGAAGGTGGTTGTGGTGCTTGTGTTGTGCTACTGTCCAAGTATGATCCTGTTCTTGACAGAGTGGAGGATTTTGCTGTTAGTTCATGTCTCACTCTACTCTGCAGCGTAAACCTATGCTCTATTACCACCTCTGAAGGCCTCGGCAATAGTAGAGATGGTTTTCATGCAATTCACCAGAGGTTCAGCGGTTTCCACGCTTCTCAATGCGGGTTTTGTACTCCGGGGATGTGTGTTTCACTCTTTTCGGCTCTTGTCAATGCTGAAAAGAAGACCGATCGAGTGGAGGCCCCTCCCGGGTTCTCCAAGCTGACTGTGTCTGAAGCTGAGAAGGCTATTGCAGGAAACCTCTGTCGCTGTACTGGGTATCGTTCCATTGCTGATGCCTGCAAGAGCTTTTCGGCTGATGTTGACATGGAGGATTTGGGGTTCAACTCCTTTTGGAGGAAGGGAGACAGTAAGCAAGCGAAGATAGATAGTTTGCCTCCTTATAATCCTGAGAGTGAGGTTTGTACATTCCCTGAGTTTTTGAAAAATGAAATCAGGTCCTTGTCGTCGTTTTTGGATTCCAAGAGATATGGTTGGTACAGTCCAGCTACTATTGACGAGCTGAAGAGCTTAGTGGAAGCAAATGATTCTGGTGATAGTATGAAGTTGGTTGTTGGTAACACAGGGACGGGGTATTACAAGGAGTTAACAGGTTATGACAAATACATTGATCTCAGATATGTTCCTGAACTATCAATAATTAGGATGGATCCGACGGGTCTTAATGTAGGAGCAATTGTAACCATCACTAAAGTTATTGAAGCTTTGAAGAAGAAAACCAAAGGTGAACTTATCTCAAGAGGTGAGCTAGTGTTTGAAAGAATTGCCAGGCATATGGATAAAATTGCTTCAGGGTTTCTCAGAAATACAGCTAGTATAGGAGGGAATTTAGTGATGGCACAAAGAAAGAACTTTCCTTCAGATATTGCTACAATACTTCTCGCTGTGGATTCAACAGTGAATATCATGAGTGGTTCTAGATCTGAAATTATTATGTTGGAGGATTTTCTGAAAAGAGCCCCATTGGATCCCAAAAGTGTACTTTTAAGTGTTAAAATCCCAAACGGGGAAGCAGTTACAAAAGTTTCTGCAGGATCCAATACTATGTTGCTATTTGAAACCTATAGAGCTGCACCCAGACCGCTAGGAAATGCATTGCCTTATTTGAATGCTGCTTTCTTGGCTGAAGTTTCTTCATGTAAAACTTCTACTGGATTTGTGGTACATCACTGCTGTCTGGCTTTTGGTGCTTATGGGACTAAACATGCAATTAGAGCAAGAAAGGTTGAAGACTTTTTAAACGGAAAAACCTTGAGTGCTGGTGTTTTGTATGAAGCGATTAAGTTAGTTCGAGCTACTGTGGTTCCTGAAGAAGGCACTACGAGTCCTGCTTACAGGTCAAGCTTGGCTTGTGGTTTTCTTTTTGAGTTCTTTAGCCCCTATATTAACAGTGACACCGAAATTTCTGATGGTTTCTTGTTCCCTACTTCTAAGATGAATAAGAACCAATGTTGCAATGATGAGATTCCATCTGTTCTATCATCAGCTAAACAAGTGCTTAATTTAAGTGCAGACTATGATCCAGTCGGCAAGCCAATTATAAAATCTGGAGCTGCCATCCAAGCTTCAGGTGAGGCTGTGTATGTAGATGACATTCCGTCACCGACAAATTGCTTGCATGGAGCGTTCATTTATAGCACAAAGCCTCTTGTACGGGTTAAGGGAATAAAATTTAAAACTAAACCACAGCCAGATGGAGTTTCTGCTGTCTTATCTTTTAAAGATATCCCCAATGGTGGGGAGAATGTGGGATCTATGACTATTTTTGGTACTGAACCTCTTTTTGCTGATGATCTTACTCAATGCGCTGGTCAGCGTCTTGCCTTTTTGGTTGCAGATACCCAGAAAAATGCAGATTTGGCTGCAAATTTTGTGGATGTTGATTATGAAATGGAAAGTATAGAGCGACCTATACTATCCGTAGAGGAGGCTATTAAGAGGTCTAGTTTTTTTGAGGTCCCTCCTTTCTTATACCCGAAGCAAGTTGGTGACATATCAAAAGGAATGGCTTTAGCTGATCACAAGATTACATCTGCTGAGATCAAACTTGGTTCACAATATTATTTCTACATGGAGACACAAACTGCCCTTGCTGTACCAGATGAAGACAACTGCATAGTGGTTTATACTTCAAGTCAGTGTCCTCAGTTTCAACACTCAGTCATCGCAAAGTGTCTTGGCATTCCTGAAAGTAATGTCCGTGTCATTACAAGGAGGGTTGGTGGGGGTTTTGGTGGAAAGGCCGTAAAATCCATTCCTGTCGCAACTGCATGTGCACTAGCAGCACACAAATTACACCGCCCTGTCAGGATATATGTCAATCGCAAGACTGATATGATAATGGCAGGAGGAAGGCATCCCATGAAGATAATTTACAGTGTGGGATTCAAGTCTGATGGGAAGATTACAGCTTTACAACTTGATATATTAATTGATGCAGGGATGTCCCCAGATATAAGTCCAATTCTGCCAAACAATGTTCTGGGTGCACTTAAGAAGTATGATTGGGGTGCTCTGTCTTTTGATGTAAAGGTATGCAAAACTAACAATCCAAGTAGGTCTGCTATGCGGGGTCCTGGGGAGGTGCAGGGGTCATTTATTGCTGAAGCTGTAATTGAACATGTAGCATCTACCCTTTCTATGGAAGTGGATTGTGTGAGAAATATAAATCTTCACACACATTGCAGCCTTGATTTATTTTATGAGAATAGTGCGGGTGAACCTCTCGAGTATACTTTACCTTTAATTTGGGACAAGCTGGCCATGTCTTCAAGCTTTAACCAAAGGACTGAAATGGTAAAAGAATTTAATAAATGCAATAAATGGCGGAAAAGAGGAATTTCTCGAGTACCTATAGTACATGAAGTTTCATTGAGAACAACACCAGGGAAAGTGAGCATTCTAAGCGATGGTTCTGTTGTTGTTGAAGTTGGAGGGATTGAACTGGGTCAGGGTCTCTGGACAAAAGTAAAACAGATGGCTGCTTTCGCTCTTGGTTCCATTCAATGTAATGATAGTGGAGACCTTTTGGATAAAGTACGGGTGGTACAATCTGATACAGTTAGCTTAATTCAAGGAGGATTTACTGCTGGAAGCACTACATCTGAGTCAAGTTGCCAGGCAGTAAGGTTATCCTGTGATATTTTGGTTGAGAGGCTAGCTCCTCTCAAGAAAATATTGCAGGAGCAAATGGGTTCTATTAAATGGGAGATGCTTATTGAAAAGGCGTACTTGCAAGCCTTGAATTTATCAGCAAGTTCTTTCTACGTTCCTGATTTTACTTCCATGCAATATCTCAACTATGGTGCTGCAGTGAGTGAGGTTGAGGTAGATCTTCTGACTGGAGAAACTAGAATATTGCAATCAGATATTATCTACGATTGCGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATCGAAGGTGCTTTTGTTCAAGGAATTGGGTTTTTCATGCTTGAAGAATACATGGAAAATTCCGAGGGATTGGTGATTTCTAATGGTACATGGACGTATAAAATTCCTTCCATAGACACTATACCCAAGCAGTTCAATGTCGAAATACTAAACAGTGGACAACACAGTAAACGTGTTCTCTCTTCAAAAGCTTCTGGTGAGCCTCCATTACTTCTAGCAGTTTCAGTTCACTGCGCTGCAAGAGCTGCTATCAAAGAATCCAGAAAACAGCTTCTTCAATGGGGAGGCCTGGATGGGTCTGCTTCAATGTTCCAGATGACCGTTCCAGCTACCATGCCTGTTGTGAAGGAGTTATGTGGGCTGGAAAGTGTGGAGAGCTACTTGGAATGGATTGCAGGCAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0002831 GO:0002833 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016444 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080134 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1900424 GO:1900426 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

1354

Amino Acids

147.43

Weight (kDa)

6.37

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	9 - 75	3.5e-07	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	87 - 174	7.3e-22	[2Fe-2S] binding domain
FAD_binding_5	PF00941	235 - 414	9.7e-39	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	433 - 538	1e-19	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	602 - 710	3.1e-28	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	739 - 970	7.2e-81	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	999 - 1261	1.9e-74	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07745 AT1G07745 AT1G07745 AT1G07745 AT1G07745
fragaria_vesca	FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810 FvH4_3g34810
malus_domestica	MD11G1043900.v1.1 MD11G1115100.v1.1
prunus_persica	Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G066800_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1 Prupe.6G086100_v2.0.a1
pyrus_communis	pycom11g09660
rosa_chinensis	RchiOBHm_Chr5g0062661
rosa_laevigata	RLG00000035569
rosa_multiflora	Rmu_sc0006470.1_g000002 Rmu_ssc0000472.1_g000029
rosa_roxburghii	Rroxscaffold_1G00017970
rosa_rugosa	Rorug05G0350700 Rorug05G0350800
rosa_samantha	Rh5AG411600 Rh5BG425600 Rh5CG449700 Rh5DG439600
rosa_wichuraiana	Rw5G038700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	621, 1778
AccI	GTMKAC	1 cut(s)	2969
AciI	CCGC	8 cut(s)	318, 339, 1319, 2536, 2806, 2951, 3064, 3621
AcoI	YGGCCR	2 cut(s)	3, 2997
AcsI	RAATTY	9 cut(s)	1063, 1638, 1907, 2104, 3041, 3075, 3481, 3715, 3759
AcuI	CTGAAG	9 cut(s)	285, 471, 761, 1011, 1080, 1383, 1566, 1788, 2862
AfiI	CCNNNNNNNGG	8 cut(s)	426, 573, 1243, 1550, 1973, 1974, 2878, 3643
AflII	CTTAAG	1 cut(s)	2729
AflIII	ACRYGT	2 cut(s)	2857, 3829
AhdI	GACNNNNNGTC	1 cut(s)	1834
AjnI	CCWGG	5 cut(s)	1004, 2812, 3121, 3354, 3945
AloI	GAACNNNNNNTCC	2 cut(s)	542, 574
Alw21I	GWGCWC	3 cut(s)	2515, 2728, 2752
Alw26I	GTCTC	6 cut(s)	224, 576, 2306, 3197, 3252, 3635
Alw44I	GTGCAC	2 cut(s)	2511, 2724
Ama87I	CYCGRG	4 cut(s)	80, 425, 2963, 3081
AoxI	GGCC	6 cut(s)	3, 268, 417, 2478, 2997, 3943
ApaLI	GTGCAC	2 cut(s)	2511, 2724
ApoI	RAATTY	9 cut(s)	1063, 1638, 1907, 2104, 3041, 3075, 3481, 3715, 3759
AseI	ATTAAT	1 cut(s)	2666
AspLEI	GCGC	2 cut(s)	2045, 3893
AspS9I	GGNCC	4 cut(s)	418, 675, 2194, 2810
AsuC2I	CCSGG	3 cut(s)	354, 426, 427
AsuNHI	GCTAGC	1 cut(s)	3394
AvaI	CYCGRG	4 cut(s)	80, 425, 2963, 3081
AvaII	GGWCC	3 cut(s)	675, 2194, 2810
BaeGI	GKGCMC	2 cut(s)	2515, 2728
BalI	TGGCCA	1 cut(s)	2999
BamHI	GGATCC	3 cut(s)	886, 1204, 1271
BanII	GRGCYC	1 cut(s)	1198
BarI	GAAGNNNNNNTAC	2 cut(s)	2594, 2626
BbsI	GAAGAC	5 cut(s)	13, 407, 1473, 2349, 2997
Bbv12I	GWGCWC	3 cut(s)	2515, 2728, 2752
BceAI	ACGGC	1 cut(s)	2465
BciT130I	CCWGG	5 cut(s)	1006, 2814, 3123, 3356, 3947
BclI	TGATCA	1 cut(s)	2254
BcnI	CCSGG	3 cut(s)	354, 426, 427
BcoDI	GTCTC	6 cut(s)	224, 576, 2306, 3197, 3252, 3635
BfmI	CTRYAG	5 cut(s)	232, 1266, 1300, 3090, 3546
BfrI	CTTAAG	1 cut(s)	2729
BglII	AGATCT	2 cut(s)	1157, 3568
Bme1390I	CCNGG	8 cut(s)	354, 426, 427, 1006, 2814, 3123, 3356, 3947
Bme18I	GGWCC	3 cut(s)	675, 2194, 2810
BmeRI	GACNNNNNGTC	1 cut(s)	1834
BmeT110I	CYCGRG	4 cut(s)	80, 425, 2963, 3081
BmgT120I	GGNCC	4 cut(s)	418, 675, 2194, 2810
BmiI	GGNNCC	8 cut(s)	420, 888, 1206, 1273, 1542, 2196, 2811, 3235
BmrFI	CCNGG	8 cut(s)	354, 426, 427, 1006, 2814, 3123, 3356, 3947
BmrI	ACTGGG	2 cut(s)	501, 3191
BmsI	GCATC	5 cut(s)	502, 2602, 2662, 2873, 3438
BmtI	GCTAGC	1 cut(s)	3398
BmuI	ACTGGG	2 cut(s)	501, 3191
BpiI	GAAGAC	5 cut(s)	13, 407, 1473, 2349, 2997
BplI	GAGNNNNNCTC	2 cut(s)	3382, 3414
BpmI	CTGGAG	2 cut(s)	1806, 3600
BpuEI	CTTGAG	3 cut(s)	958, 1510, 3389
BpuMI	CCSGG	3 cut(s)	354, 426, 427
BsaI	GGTCTC	2 cut(s)	3197, 3252
BsaJI	CCNNGG	6 cut(s)	271, 353, 425, 2813, 3122, 3720
BsaXI	ACNNNNNCTCC	4 cut(s)	900, 930, 2443, 2473
Bsc4I	CCNNNNNNNGG	8 cut(s)	426, 573, 1243, 1550, 1973, 1974, 2878, 3643
Bse1I	ACTGG	5 cut(s)	496, 1393, 1760, 3186, 3583
Bse3DI	GCAATG	4 cut(s)	504, 1331, 1699, 2917
BseBI	CCWGG	5 cut(s)	1006, 2814, 3123, 3356, 3947
BseDI	CCNNGG	6 cut(s)	271, 353, 425, 2813, 3122, 3720
BseGI	GGATG	7 cut(s)	363, 888, 1794, 2119, 2593, 2685, 3955
BseLI	CCNNNNNNNGG	8 cut(s)	426, 573, 1243, 1550, 1973, 1974, 2878, 3643
BseMI	GCAATG	4 cut(s)	504, 1331, 1699, 2917
BseMII	CTCAG	9 cut(s)	447, 618, 642, 865, 1051, 2265, 2396, 2409, 3333
BseNI	ACTGG	5 cut(s)	496, 1393, 1760, 3186, 3583
BseRI	GAGGAG	2 cut(s)	2177, 3390
BseSI	GKGCMC	2 cut(s)	2515, 2728
BsgI	GTGCAG	3 cut(s)	1293, 1767, 2843
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	6 cut(s)	5, 270, 419, 2480, 2999, 3945
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	3 cut(s)	2515, 2728, 2752
BsiHKCI	CYCGRG	4 cut(s)	80, 425, 2963, 3081
BsiSI	CCGG	3 cut(s)	6, 353, 426
BslFI	GGGAC	5 cut(s)	817, 1447, 2180, 2668, 3002
BslI	CCNNNNNNNGG	8 cut(s)	426, 573, 1243, 1550, 1973, 1974, 2878, 3643
BsmAI	GTCTC	6 cut(s)	224, 576, 2306, 3197, 3252, 3635
BsmFI	GGGAC	5 cut(s)	817, 1447, 2180, 2668, 3002
BsmI	GAATGC	3 cut(s)	1351, 2418, 3135
BsnI	GGCC	6 cut(s)	5, 270, 419, 2480, 2999, 3945
Bso31I	GGTCTC	2 cut(s)	3197, 3252
BsoBI	CYCGRG	4 cut(s)	80, 425, 2963, 3081
Bsp1286I	GDGCHC	4 cut(s)	1198, 2515, 2728, 2752
Bsp1407I	TGTACA	1 cut(s)	641
BspACI	CCGC	8 cut(s)	318, 339, 1319, 2536, 2806, 2951, 3064, 3621
BspANI	GGCC	6 cut(s)	5, 270, 419, 2480, 2999, 3945
BspCNI	CTCAG	9 cut(s)	448, 619, 643, 864, 1050, 2266, 2395, 2408, 3334
BspHI	TCATGA	1 cut(s)	1143
BspLI	GGNNCC	8 cut(s)	420, 888, 1206, 1273, 1542, 2196, 2811, 3235
BspMAI	CTGCAG	3 cut(s)	236, 1270, 3550
BspOI	GCTAGC	1 cut(s)	3398
BspQI	GCTCTTC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	2729
BspTNI	GGTCTC	2 cut(s)	3197, 3252
BsrDI	GCAATG	4 cut(s)	504, 1331, 1699, 2917
BsrGI	TGTACA	1 cut(s)	641
BsrI	ACTGG	5 cut(s)	496, 1393, 1760, 3186, 3583
BssECI	CCNNGG	6 cut(s)	271, 353, 425, 2813, 3122, 3720
BssNAI	GTATAC	1 cut(s)	2970
Bst1107I	GTATAC	1 cut(s)	2970
Bst2UI	CCWGG	5 cut(s)	1006, 2814, 3123, 3356, 3947
Bst6I	CTCTTC	2 cut(s)	737, 3844
BstAFI	CTTAAG	1 cut(s)	2729
BstAPI	GCANNNNNTGC	1 cut(s)	3902
BstAUI	TGTACA	1 cut(s)	641
BstC8I	GCNNGC	8 cut(s)	517, 594, 1769, 1853, 2997, 3396, 3474, 4054
BstENI	CCTNNNNNAGG	2 cut(s)	571, 1548
BstF5I	GGATG	7 cut(s)	363, 888, 1794, 2119, 2593, 2685, 3955
BstHHI	GCGC	2 cut(s)	2045, 3893
BstMAI	GTCTC	6 cut(s)	224, 576, 2306, 3197, 3252, 3635
BstMCI	CGRYCG	1 cut(s)	409
BstNI	CCWGG	5 cut(s)	1006, 2814, 3123, 3356, 3947
BstNSI	RCATGY	3 cut(s)	1445, 2511, 2861
BstSCI	CCNGG	8 cut(s)	352, 424, 425, 1004, 2812, 3121, 3354, 3945
BstSFI	CTRYAG	5 cut(s)	232, 1266, 1300, 3090, 3546
BstSLI	GKGCMC	2 cut(s)	2515, 2728
BstV2I	GAAGAC	5 cut(s)	13, 407, 1473, 2349, 2997
BstX2I	RGATCY	6 cut(s)	886, 1157, 1204, 1271, 1988, 3568
BstXI	CCANNNNNNTGG	1 cut(s)	1012
BstYI	RGATCY	6 cut(s)	886, 1157, 1204, 1271, 1988, 3568
BstZ17I	GTATAC	1 cut(s)	2970
BsuRI	GGCC	6 cut(s)	5, 270, 419, 2480, 2999, 3945
BtgZI	GCGATG	2 cut(s)	2386, 3159
BtsCI	GGATG	7 cut(s)	363, 888, 1794, 2119, 2593, 2685, 3955
BtsI	GCAGTG	3 cut(s)	1405, 3555, 3886
BtsIMutI	CAGTG	8 cut(s)	1140, 1405, 1633, 2381, 2620, 3555, 3817, 3886
Cac8I	GCNNGC	8 cut(s)	517, 594, 1769, 1853, 2997, 3396, 3474, 4054
CciI	TCATGA	1 cut(s)	1143
CfoI	GCGC	2 cut(s)	2045, 3893
Cfr13I	GGNCC	4 cut(s)	418, 675, 2194, 2810
Cfr9I	CCCGGG	1 cut(s)	425
CseI	GACGC	2 cut(s)	103, 2042
CspCI	CAANNNNNGTGG	2 cut(s)	2091, 2126
DraI	TTTAAA	3 cut(s)	1476, 1912, 1957
DriI	GACNNNNNGTC	1 cut(s)	1834
EaeI	YGGCCR	2 cut(s)	3, 2997
Eam1104I	CTCTTC	2 cut(s)	737, 3844
Eam1105I	GACNNNNNGTC	1 cut(s)	1834
EarI	CTCTTC	2 cut(s)	737, 3844
EciI	GGCGGA	1 cut(s)	3079
Eco147I	AGGCCT	2 cut(s)	270, 3945
Eco24I	GRGCYC	1 cut(s)	1198
Eco31I	GGTCTC	2 cut(s)	3197, 3252
Eco32I	GATATC	1 cut(s)	1963
Eco47I	GGWCC	3 cut(s)	675, 2194, 2810
Eco57I	CTGAAG	9 cut(s)	285, 471, 761, 1011, 1080, 1383, 1566, 1788, 2862
Eco88I	CYCGRG	4 cut(s)	80, 425, 2963, 3081
EcoNI	CCTNNNNNAGG	2 cut(s)	571, 1548
EcoO109I	RGGNCCY	4 cut(s)	418, 675, 2194, 2810
EcoRII	CCWGG	5 cut(s)	1004, 2812, 3121, 3354, 3945
EcoRV	GATATC	1 cut(s)	1963
EcoT22I	ATGCAT	1 cut(s)	1333
EcoT38I	GRGCYC	1 cut(s)	1198
FalI	AAGNNNNNCTT	6 cut(s)	951, 983, 1570, 1602, 3452, 3484
FaqI	GGGAC	5 cut(s)	817, 1447, 2180, 2668, 3002
FauI	CCCGC	3 cut(s)	332, 2799, 2944
FauNDI	CATATG	1 cut(s)	1011
FbaI	TGATCA	1 cut(s)	2254
FblI	GTMKAC	1 cut(s)	2969
FokI	GGATG	7 cut(s)	370, 895, 1781, 2126, 2580, 2692, 3962
FriOI	GRGCYC	1 cut(s)	1198
GlaI	GCGC	2 cut(s)	2044, 3892
GsuI	CTGGAG	2 cut(s)	1806, 3600
HaeIII	GGCC	6 cut(s)	5, 270, 419, 2480, 2999, 3945
HapII	CCGG	3 cut(s)	6, 353, 426
HgaI	GACGC	2 cut(s)	103, 2042
HhaI	GCGC	2 cut(s)	2045, 3893
Hin6I	GCGC	2 cut(s)	2043, 3891
HinP1I	GCGC	2 cut(s)	2043, 3891
HincII	GTYRAC	2 cut(s)	541, 825
HindII	GTYRAC	2 cut(s)	541, 825
HindIII	AAGCTT	5 cut(s)	939, 1579, 1800, 3010, 3846
HinfI	GANTC	9 cut(s)	695, 764, 1127, 1561, 1702, 2622, 3344, 3628, 3914
HpaI	GTTAAC	1 cut(s)	825
HpaII	CCGG	3 cut(s)	6, 353, 426
Hpy99I	CGWCG	2 cut(s)	688, 895
HpyCH4IV	ACGT	3 cut(s)	3504, 3752, 3829
HpySE526I	ACGT	3 cut(s)	3504, 3752, 3829
HspAI	GCGC	2 cut(s)	2043, 3891
Ksp22I	TGATCA	1 cut(s)	2254
KspAI	GTTAAC	1 cut(s)	825
LguI	GCTCTTC	1 cut(s)	737
LmnI	GCTCC	5 cut(s)	908, 1787, 1859, 3403, 3421
LweI	GCATC	5 cut(s)	502, 2602, 2662, 2873, 3438
MaeII	ACGT	3 cut(s)	3504, 3752, 3829
MaeIII	GTNAC	6 cut(s)	794, 916, 1252, 1628, 1836, 2225
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	6 cut(s)	886, 1157, 1204, 1271, 1988, 3568
MhlI	GDGCHC	4 cut(s)	1198, 2515, 2728, 2752
MlsI	TGGCCA	1 cut(s)	2999
MluNI	TGGCCA	1 cut(s)	2999
MlyI	GAGTC	3 cut(s)	1570, 3353, 3637
MmeI	TCCRAC	3 cut(s)	914, 1155, 3148
Mox20I	TGGCCA	1 cut(s)	2999
Mph1103I	ATGCAT	1 cut(s)	1333
MscI	TGGCCA	1 cut(s)	2999
Msp20I	TGGCCA	1 cut(s)	2999
MspA1I	CMGCKG	1 cut(s)	318
MspCI	CTTAAG	1 cut(s)	2729
MspI	CCGG	3 cut(s)	6, 353, 426
MspR9I	CCNGG	8 cut(s)	354, 426, 427, 1006, 2814, 3123, 3356, 3947
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	3 cut(s)	1351, 2418, 3135
MvaI	CCWGG	5 cut(s)	1006, 2814, 3123, 3356, 3947
NciI	CCSGG	3 cut(s)	354, 426, 427
NdeI	CATATG	1 cut(s)	1011
NheI	GCTAGC	1 cut(s)	3394
NlaIV	GGNNCC	8 cut(s)	420, 888, 1206, 1273, 1542, 2196, 2811, 3235
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	3 cut(s)	1628, 1836, 2225
NsiI	ATGCAT	1 cut(s)	1333
NspI	RCATGY	3 cut(s)	1445, 2511, 2861
PaeR7I	CTCGAG	3 cut(s)	80, 2963, 3081
PagI	TCATGA	1 cut(s)	1143
PceI	AGGCCT	2 cut(s)	270, 3945
PciI	ACATGT	1 cut(s)	2857
PciSI	GCTCTTC	1 cut(s)	737
PctI	GAATGC	3 cut(s)	1351, 2418, 3135
PfeI	GAWTC	6 cut(s)	695, 764, 1127, 1702, 2622, 3914
PflFI	GACNNNGTC	1 cut(s)	445
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	3 cut(s)	1569, 3352, 3636
PpsI	GAGTC	3 cut(s)	1569, 3352, 3636
PpuMI	RGGWCCY	3 cut(s)	675, 2194, 2810
PscI	ACATGT	1 cut(s)	2857
PshBI	ATTAAT	1 cut(s)	2666
PsiI	TTATAA	2 cut(s)	621, 1778
Psp5II	RGGWCCY	3 cut(s)	675, 2194, 2810
Psp6I	CCWGG	5 cut(s)	1004, 2812, 3121, 3354, 3945
PspGI	CCWGG	5 cut(s)	1004, 2812, 3121, 3354, 3945
PspN4I	GGNNCC	8 cut(s)	420, 888, 1206, 1273, 1542, 2196, 2811, 3235
PspPI	GGNCC	4 cut(s)	418, 675, 2194, 2810
PspPPI	RGGWCCY	3 cut(s)	675, 2194, 2810
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	3 cut(s)	236, 1270, 3550
PsuI	RGATCY	6 cut(s)	886, 1157, 1204, 1271, 1988, 3568
PsyI	GACNNNGTC	1 cut(s)	445
PvuI	CGATCG	1 cut(s)	409
SapI	GCTCTTC	1 cut(s)	737
Sau96I	GGNCC	4 cut(s)	418, 675, 2194, 2810
SchI	GAGTC	3 cut(s)	1570, 3353, 3637
ScrFI	CCNGG	8 cut(s)	354, 426, 427, 1006, 2814, 3123, 3356, 3947
SduI	GDGCHC	4 cut(s)	1198, 2515, 2728, 2752
SfaNI	GCATC	5 cut(s)	502, 2602, 2662, 2873, 3438
SfcI	CTRYAG	5 cut(s)	232, 1266, 1300, 3090, 3546
Sfr274I	CTCGAG	3 cut(s)	80, 2963, 3081
SinI	GGWCC	3 cut(s)	675, 2194, 2810
SlaI	CTCGAG	3 cut(s)	80, 2963, 3081
SmaI	CCCGGG	1 cut(s)	427
SmlI	CTYRAG	7 cut(s)	80, 973, 1489, 2729, 2963, 3081, 3404
SmoI	CTYRAG	7 cut(s)	80, 973, 1489, 2729, 2963, 3081, 3404
SseBI	AGGCCT	2 cut(s)	270, 3945
SsiI	CCGC	8 cut(s)	318, 339, 1319, 2536, 2806, 2951, 3064, 3621
SspI	AATATT	3 cut(s)	2297, 3414, 3594
StuI	AGGCCT	2 cut(s)	270, 3945
StyD4I	CCNGG	8 cut(s)	352, 424, 425, 1004, 2812, 3121, 3354, 3945
TaiI	ACGT	3 cut(s)	3507, 3755, 3832
TaqI	TCGA	7 cut(s)	81, 409, 1528, 2964, 3082, 3660, 3798
TaqII	GACCGA	1 cut(s)	419
TatI	WGTACW	5 cut(s)	347, 488, 641, 1216, 3094
TfiI	GAWTC	6 cut(s)	695, 764, 1127, 1702, 2622, 3914
TscAI	CASTG	8 cut(s)	1140, 1412, 1633, 2381, 2620, 3555, 3817, 3893
TseFI	GTSAC	3 cut(s)	1628, 1836, 2225
Tsp45I	GTSAC	3 cut(s)	1628, 1836, 2225
TspGWI	ACGGA	5 cut(s)	80, 1494, 1824, 2146, 2426
TspMI	CCCGGG	1 cut(s)	425
TspRI	CASTG	8 cut(s)	1140, 1412, 1633, 2381, 2620, 3555, 3817, 3893
Tth111I	GACNNNGTC	1 cut(s)	445
Vha464I	CTTAAG	1 cut(s)	2729
VneI	GTGCAC	2 cut(s)	2511, 2724
VpaK11BI	GGWCC	3 cut(s)	675, 2194, 2810
VspI	ATTAAT	1 cut(s)	2666
XagI	CCTNNNNNAGG	2 cut(s)	571, 1548
XapI	RAATTY	9 cut(s)	1063, 1638, 1907, 2104, 3041, 3075, 3481, 3715, 3759
XbaI	TCTAGA	1 cut(s)	1154
XceI	RCATGY	3 cut(s)	1445, 2511, 2861
XhoI	CTCGAG	3 cut(s)	80, 2963, 3081
XmaI	CCCGGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	2969
Zsp2I	ATGCAT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.