Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Reverse (-)

2483240 .. 2485726

Gene Structure 2487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAATTGGTTACCTGAAGCTGAAGCTGAGGAGCACTTGAAAGGTATTCTCTCTGGTGATTTCTTTGATGGTCTCACCAATCACCTTGATTGCCCACTTGAAGACATCGATTCCACCAATGGTGAGGGAGATTGGGTCGCCAGGTTTCAAGACCTTGAGCCTCCTCCCTTGGATATGTTCCCTGCTTTGCCTTCTGACCTCACCTCTTGTCCCAAGGGCGCCGCTCGTGTGCGGATTCCCAACAACATGATTCCTGCTTTGAAGCAGTCCTGTTCTTCTGAAGCCTTGTCCGGCATTAATAGCACTCCCCACCAATCTTCAGCTCCTCCTGATATCAAAGTTTCATATCTATTTCAGTCTCTAACTCCAGTGTCAGTTCTCGAGAACAGTTATGGTTCTCTCTCCACCCAAAACTCCGGATCTCAGAGATTGGCTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAGACGCCCCACAACAGTGAGACTTAGCTACCTTTTCCCCTTTGAACCCAGAAAGTCAACTCCGGGTGAATCAGTAACCGAGGGTTACTATTCTTCTGAGCAACATGCCAAGAAGAAGCGCAAGATTCATCTGATCACCCACACCGAGTCTTCCACTTTGGAGTCAAGTAAGTCGGATGGGATAGTCCGGATATGCACTCATTGTGAGACAATCACGACCCCACAGTGGAGGCAAGGACCCAGTGGACCCAAGACCCTCTGCAACGCTTGCGGAGTCCGGTTCAAATCTGGTCGCCTAGTTCCAGAATACCGGCCAGCCTCAAGCCCGACCTTCATCCCATCTGTGCATTCAAACTCACACAGGAAGATCATTGAGATGAGAAAGAAGGACGACGAGTTTGATACCAGCATGATTCGCAGTGATATCCAGAAGGTAAAGCAGGGGAGGAAGAAAATGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

308

Amino Acids

34.29

Weight (kDa)

9.0

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	220 - 254	1.1e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	224
AccIII	TCCGGA	2 cut(s)	416, 651
AciI	CCGC	3 cut(s)	222, 232, 735
AclWI	GGATC	1 cut(s)	427
AcoI	YGGCCR	1 cut(s)	776
AcuI	CTGAAG	4 cut(s)	36, 42, 300, 303
AcyI	GRCGYC	2 cut(s)	219, 469
AfiI	CCNNNNNNNGG	2 cut(s)	446, 690
AgsI	TTSAA	7 cut(s)	40, 101, 149, 262, 509, 748, 816
AjnI	CCWGG	1 cut(s)	140
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	4 cut(s)	20, 26, 323, 492
AluI	AGCT	4 cut(s)	20, 26, 323, 492
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	4 cut(s)	77, 363, 478, 665
AlwI	GGATC	1 cut(s)	427
Ama87I	CYCGRG	1 cut(s)	380
Aor13HI	TCCGGA	2 cut(s)	416, 651
AoxI	GGCC	1 cut(s)	776
ArsI	GACNNNNNNTTYG	2 cut(s)	845, 877
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	3 cut(s)	221, 465, 585
AspS9I	GGNCC	2 cut(s)	701, 710
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	7 cut(s)	67, 68, 74, 134, 193, 542, 592
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	701, 710
BanI	GGYRCC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	2 cut(s)	108, 606
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	27
BccI	CCATC	3 cut(s)	62, 635, 811
BciT130I	CCWGG	1 cut(s)	142
BclI	TGATCA	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	4 cut(s)	77, 363, 478, 665
BfaI	CTAG	1 cut(s)	761
BfoI	RGCGCY	1 cut(s)	222
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	142, 528
Bme18I	GGWCC	2 cut(s)	701, 710
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	701, 710
BmiI	GGNNCC	3 cut(s)	220, 703, 712
BmrFI	CCNGG	2 cut(s)	142, 528
BmrI	ACTGGG	1 cut(s)	699
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	2 cut(s)	108, 606
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	176, 769
BpuMI	CCSGG	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	219, 469
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	168, 213, 543
BsaWI	WCCGGW	3 cut(s)	416, 651, 741
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 690
Bse118I	RCCGGY	1 cut(s)	774
Bse1I	ACTGG	2 cut(s)	368, 705
BseAI	TCCGGA	2 cut(s)	416, 651
BseBI	CCWGG	1 cut(s)	142
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	168, 213, 543
BseGI	GGATG	2 cut(s)	646, 798
BseLI	CCNNNNNNNGG	2 cut(s)	446, 690
BseMII	CTCAG	3 cut(s)	18, 437, 552
BseNI	ACTGG	2 cut(s)	368, 705
BseRI	GAGGAG	3 cut(s)	44, 153, 315
BshFI	GGCC	1 cut(s)	778
BshNI	GGYRCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	6 cut(s)	291, 417, 527, 652, 742, 775
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	446, 690
BsmAI	GTCTC	4 cut(s)	77, 363, 478, 665
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	811
BsnI	GGCC	1 cut(s)	778
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	2 cut(s)	416, 651
Bsp143I	GATC	3 cut(s)	419, 597, 831
BspACI	CCGC	3 cut(s)	222, 232, 735
BspANI	GGCC	1 cut(s)	778
BspCNI	CTCAG	3 cut(s)	19, 436, 553
BspDI	ATCGAT	1 cut(s)	108
BspEI	TCCGGA	2 cut(s)	416, 651
BspLI	GGNNCC	3 cut(s)	220, 703, 712
BspPI	GGATC	1 cut(s)	427
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	368, 705
BssAI	RCCGGY	1 cut(s)	774
BssECI	CCNNGG	3 cut(s)	168, 213, 543
BssMI	GATC	3 cut(s)	419, 597, 831
BssNI	GRCGYC	2 cut(s)	219, 469
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	168, 213
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	3 cut(s)	389, 481, 690
BstACI	GRCGYC	2 cut(s)	219, 469
BstAPI	GCANNNNNTGC	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	461, 733, 780
BstDEI	CTNAG	4 cut(s)	27, 423, 488, 561
BstEII	GGTNACC	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	646, 798
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	3 cut(s)	221, 465, 585
BstKTI	GATC	3 cut(s)	422, 600, 834
BstMAI	GTCTC	4 cut(s)	77, 363, 478, 665
BstMBI	GATC	3 cut(s)	419, 597, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	300, 456, 732, 879
BstNI	CCWGG	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	572
BstPI	GGTNACC	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	140, 526
BstV2I	GAAGAC	2 cut(s)	108, 606
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	778
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	646, 798
BtsI	GCAGTG	1 cut(s)	889
BtsIMutI	CAGTG	5 cut(s)	375, 486, 695, 712, 889
Cac8I	GCNNGC	3 cut(s)	461, 733, 780
CfoI	GCGC	3 cut(s)	221, 465, 585
Cfr10I	RCCGGY	1 cut(s)	774
Cfr13I	GGNCC	2 cut(s)	701, 710
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	477
CviAII	CATG	4 cut(s)	247, 451, 569, 874
DdeI	CTNAG	4 cut(s)	27, 423, 488, 561
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	3 cut(s)	421, 599, 833
DpnII	GATC	3 cut(s)	419, 597, 831
EaeI	YGGCCR	1 cut(s)	776
Eco130I	CCWWGG	2 cut(s)	168, 213
Eco31I	GGTCTC	1 cut(s)	77
Eco32I	GATATC	2 cut(s)	334, 889
Eco47I	GGWCC	2 cut(s)	701, 710
Eco57I	CTGAAG	4 cut(s)	36, 42, 300, 303
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	701
EcoO65I	GGTNACC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	140
EcoRV	GATATC	2 cut(s)	334, 889
EcoT14I	CCWWGG	2 cut(s)	168, 213
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	168, 213
FaeI	CATG	4 cut(s)	250, 454, 572, 877
FaiI	YATR	9 cut(s)	176, 248, 346, 393, 452, 570, 658, 875, 925
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	4 cut(s)	246, 450, 568, 873
FbaI	TGATCA	1 cut(s)	597
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	653, 785
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	761
GlaI	GCGC	3 cut(s)	220, 464, 584
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	6 cut(s)	291, 417, 527, 652, 742, 775
HgaI	GACGC	1 cut(s)	477
HhaI	GCGC	3 cut(s)	221, 465, 585
Hin1I	GRCGYC	2 cut(s)	219, 469
Hin1II	CATG	4 cut(s)	250, 454, 572, 877
Hin6I	GCGC	3 cut(s)	219, 463, 583
HinP1I	GCGC	3 cut(s)	219, 463, 583
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	9 cut(s)	110, 235, 250, 533, 589, 611, 626, 738, 877
HpaII	CCGG	6 cut(s)	291, 417, 527, 652, 742, 775
HphI	GGTGA	7 cut(s)	67, 68, 74, 134, 193, 542, 592
Hpy166II	GTNNAC	2 cut(s)	522, 710
Hpy188I	TCNGA	6 cut(s)	196, 280, 426, 562, 597, 640
Hpy188III	TCNNGA	9 cut(s)	149, 329, 380, 382, 417, 652, 679, 767, 892
Hpy8I	GTNNAC	2 cut(s)	522, 710
Hpy99I	CGWCG	1 cut(s)	860
HpyAV	CCTTC	4 cut(s)	201, 805, 844, 889
HpyCH4III	ACNGT	3 cut(s)	389, 481, 690
HpyCH4V	TGCA	3 cut(s)	660, 726, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	300, 456, 732, 879
HpyF3I	CTNAG	4 cut(s)	27, 423, 488, 561
Hsp92I	GRCGYC	2 cut(s)	219, 469
Hsp92II	CATG	4 cut(s)	250, 454, 572, 877
HspAI	GCGC	3 cut(s)	219, 463, 583
KasI	GGCGCC	1 cut(s)	218
Kpn2I	TCCGGA	2 cut(s)	416, 651
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	3 cut(s)	419, 597, 831
LmnI	GCTCC	2 cut(s)	31, 328
MaeI	CTAG	1 cut(s)	761
MaeIII	GTNAC	3 cut(s)	9, 538, 548
MalI	GATC	3 cut(s)	421, 599, 833
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	3 cut(s)	419, 597, 831
MboII	GAAGA	8 cut(s)	113, 267, 309, 549, 589, 606, 841, 925
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	4
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	3 cut(s)	620, 635, 747
MmeI	TCCRAC	1 cut(s)	618
MroI	TCCGGA	2 cut(s)	416, 651
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	2 cut(s)	479, 839
MspI	CCGG	6 cut(s)	291, 417, 527, 652, 742, 775
MspR9I	CCNGG	2 cut(s)	142, 528
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	300, 456, 732, 879
NarI	GGCGCC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	3 cut(s)	419, 597, 831
NlaIII	CATG	4 cut(s)	250, 454, 572, 877
NlaIV	GGNNCC	3 cut(s)	220, 703, 712
NspI	RCATGY	1 cut(s)	572
OliI	CACNNNNGTG	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	380
PctI	GAATGC	1 cut(s)	811
PfeI	GAWTC	6 cut(s)	110, 235, 250, 533, 589, 877
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	3 cut(s)	619, 634, 746
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	3 cut(s)	619, 634, 746
PpuMI	RGGWCCY	1 cut(s)	701
PshBI	ATTAAT	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	140
PspEI	GGTNACC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	220, 703, 712
PspPI	GGNCC	2 cut(s)	701, 710
PspPPI	RGGWCCY	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	419
RseI	CAYNNNNRTG	2 cut(s)	479, 839
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	3 cut(s)	419, 597, 831
Sau96I	GGNCC	2 cut(s)	701, 710
SchI	GAGTC	3 cut(s)	620, 635, 747
ScrFI	CCNGG	2 cut(s)	142, 528
SduI	GDGCHC	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	220
Sfr274I	CTCGAG	1 cut(s)	380
SinI	GGWCC	2 cut(s)	701, 710
SlaI	CTCGAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	2 cut(s)	479, 839
SmlI	CTYRAG	3 cut(s)	155, 380, 784
SmoI	CTYRAG	3 cut(s)	155, 380, 784
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	3 cut(s)	222, 232, 735
SspDI	GGCGCC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	761
StyD4I	CCNGG	2 cut(s)	140, 526
StyI	CCWWGG	2 cut(s)	168, 213
TaaI	ACNGT	3 cut(s)	389, 481, 690
TaqI	TCGA	2 cut(s)	108, 381
TasI	AATT	1 cut(s)	4
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	6 cut(s)	110, 235, 250, 533, 589, 877
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	5 cut(s)	375, 486, 695, 712, 889
TspDTI	ATGAA	4 cut(s)	17, 333, 581, 787
TspRI	CASTG	5 cut(s)	375, 486, 695, 712, 889
VpaK11BI	GGWCC	2 cut(s)	701, 710
VspI	ATTAAT	1 cut(s)	297
XagI	CCTNNNNNAGG	1 cut(s)	444
XceI	RCATGY	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	380
XspI	CTAG	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.