Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Forward (+)

27089763 .. 27093816

Gene Structure 4054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31980.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATGCTTTGCCTTTGGATGATAACATTAACCAACTGTTGGAGCACTTTTACGATGACGATACCATTAAGGCTCTTGATTTCCCCATGGAGGACATTGATGCCACCGACGAGGATTGGAAGACTCAACTCCAGGGACTTGAGCCGTACTATGAATCGAGTTTCCAGTACCTTTCCACTTCGTATGAAGGTACTTCGGGTGTAACTGCTATAACCACCAGCGGCAGAAGCAGTCTCCAAAGCAACGATTTCTTTGATCAAAAGCACATGCACCTGATCCCAACCCATAGTCCGGTGTCTGTCCTTAAAAGCCAGAGTGAAAGCCAAAGTTCTGGCTCGGCTCAACACCTGAGACCCTTGGAGCCTAATTTCATGAACATCAGAGCCCCCGAACCCAGTTTCGTCAACCCGGTGAAGAAGAAGCGTACACAATGCAGGCGTGCACGCCCTGCTAATTTCAGTCACCGGTTCACCTTCCCATGTGTGTCGTCCAATTCCAGTGTCTCCGACAATTTTTATCGTTTTGAAACCTTTCTGACTGAGGAGATGTTGAATCCTGACAAGAGAAGACAGAAGAAAAAGAATCCCTCCTTTCAGGAAACGGGTGAGATTAGTGAAACCAAAAGATGCGTGGAACCAGGCGAGAATCGAGAGACTAAAAGATGTACGCACTGTGCGGTTACGAAGACCCCACAGTGGAGGGAAGGGCCACTGGGGCCTAAGACCCTCTGCAATGCATGTGGAGTTCGTTACAGGTCTGGCCGCCTCTTTCCCGAGTACCGCCCTGCAGCAAGCCCTACGTTCGTTCCAGCAGTGCATTCAAACTCCCACAAGAAGGTTATAGAGTTGAGAAACAAGGGTTGCCAAGCGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

292

Amino Acids

33.12

Weight (kDa)

8.07

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	222 - 255	3.5e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AciI	CCGC	4 cut(s)	222, 677, 763, 781
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	760
AfaI	GTAC	6 cut(s)	149, 170, 193, 427, 667, 779
AfiI	CCNNNNNNNGG	5 cut(s)	40, 91, 292, 696, 835
AgeI	ACCGGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	527, 553, 822
AjnI	CCWGG	2 cut(s)	132, 637
AluBI	AGCT	1 cut(s)	873
AluI	AGCT	1 cut(s)	873
Alw21I	GWGCWC	2 cut(s)	48, 445
Alw26I	GTCTC	4 cut(s)	239, 346, 508, 647
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	3 cut(s)	707, 716, 760
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	788
AsiGI	ACCGGT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	531
AspS9I	GGNCC	2 cut(s)	707, 716
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	4 cut(s)	424, 455, 463, 617
AvaI	CYCGRG	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	3 cut(s)	128, 574, 692
Bbv12I	GWGCWC	2 cut(s)	48, 445
BbvI	GCAGC	1 cut(s)	800
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	2 cut(s)	134, 639
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	4 cut(s)	239, 346, 508, 647
BfaI	CTAG	1 cut(s)	874
BfmI	CTRYAG	1 cut(s)	786
BglI	GCCNNNNNGGC	1 cut(s)	715
BisI	GCNGC	3 cut(s)	223, 763, 789
BlsI	GCNGC	3 cut(s)	224, 764, 790
Bme1390I	CCNGG	3 cut(s)	134, 410, 639
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	707, 716
BmiI	GGNNCC	3 cut(s)	363, 636, 717
BmrFI	CCNGG	3 cut(s)	134, 410, 639
BmrI	ACTGGG	2 cut(s)	390, 722
BmsI	GCATC	2 cut(s)	91, 617
BmuI	ACTGGG	2 cut(s)	390, 722
BpiI	GAAGAC	3 cut(s)	128, 574, 692
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	87, 133, 357
BsaWI	WCCGGW	2 cut(s)	292, 465
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 91, 292, 696, 835
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	4 cut(s)	166, 396, 498, 717
Bse3DI	GCAATG	1 cut(s)	739
BseBI	CCWGG	2 cut(s)	134, 639
BseDI	CCNNGG	3 cut(s)	87, 133, 357
BseGI	GGATG	2 cut(s)	10, 25
BseLI	CCNNNNNNNGG	5 cut(s)	40, 91, 292, 696, 835
BseMI	GCAATG	1 cut(s)	739
BseMII	CTCAG	2 cut(s)	341, 531
BseNI	ACTGG	4 cut(s)	166, 396, 498, 717
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	800
BshFI	GGCC	3 cut(s)	709, 718, 762
BshTI	ACCGGT	1 cut(s)	465
BsiHKAI	GWGCWC	2 cut(s)	48, 445
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	3 cut(s)	293, 410, 466
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	5 cut(s)	40, 91, 292, 696, 835
BsmAI	GTCTC	4 cut(s)	239, 346, 508, 647
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	3 cut(s)	709, 718, 762
Bso31I	GGTCTC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	3 cut(s)	48, 388, 445
Bsp143I	GATC	2 cut(s)	256, 276
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	4 cut(s)	222, 677, 763, 781
BspANI	GGCC	3 cut(s)	709, 718, 762
BspCNI	CTCAG	2 cut(s)	342, 532
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	363, 636, 717
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	739
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	4 cut(s)	166, 396, 498, 717
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	3 cut(s)	87, 133, 357
BssMI	GATC	2 cut(s)	256, 276
BssT1I	CCWWGG	2 cut(s)	87, 357
Bst2UI	CCWGG	2 cut(s)	134, 639
Bst4CI	ACNGT	3 cut(s)	39, 674, 696
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	5 cut(s)	437, 441, 445, 793, 871
BstDEI	CTNAG	3 cut(s)	350, 540, 720
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	10, 25
BstKTI	GATC	2 cut(s)	259, 279
BstMAI	GTCTC	4 cut(s)	239, 346, 508, 647
BstMBI	GATC	2 cut(s)	256, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 449, 715, 870
BstNI	CCWGG	2 cut(s)	134, 639
BstNSI	RCATGY	2 cut(s)	271, 741
BstSCI	CCNGG	3 cut(s)	132, 408, 637
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	800
BstV2I	GAAGAC	3 cut(s)	128, 574, 692
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	709, 718, 762
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	10, 25
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	5 cut(s)	505, 670, 701, 710, 819
Cac8I	GCNNGC	5 cut(s)	437, 441, 445, 793, 871
CciI	TCATGA	1 cut(s)	372
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	707, 716
Csp6I	GTAC	6 cut(s)	148, 169, 192, 426, 666, 778
CspAI	ACCGGT	1 cut(s)	465
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	5 cut(s)	88, 268, 373, 480, 738
CviQI	GTAC	6 cut(s)	148, 169, 192, 426, 666, 778
DdeI	CTNAG	3 cut(s)	350, 540, 720
DpnI	GATC	2 cut(s)	258, 278
DpnII	GATC	2 cut(s)	256, 276
EaeI	YGGCCR	1 cut(s)	760
Eco130I	CCWWGG	2 cut(s)	87, 357
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	132, 637
EcoT14I	CCWWGG	2 cut(s)	87, 357
EcoT22I	ATGCAT	1 cut(s)	739
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	2 cut(s)	87, 357
FaeI	CATG	5 cut(s)	91, 271, 376, 483, 741
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	5 cut(s)	87, 267, 372, 479, 737
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	223, 763, 789
FokI	GGATG	2 cut(s)	17, 32
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	3 cut(s)	223, 763, 789
FspBI	CTAG	1 cut(s)	874
GluI	GCNGC	3 cut(s)	223, 763, 789
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	709, 718, 762
HapII	CCGG	3 cut(s)	293, 410, 466
Hin1II	CATG	5 cut(s)	91, 271, 376, 483, 741
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	5 cut(s)	124, 155, 553, 583, 646
HpaII	CCGG	3 cut(s)	293, 410, 466
HphI	GGTGA	4 cut(s)	424, 455, 463, 617
Hpy166II	GTNNAC	4 cut(s)	406, 428, 443, 471
Hpy188I	TCNGA	3 cut(s)	383, 508, 537
Hpy188III	TCNNGA	6 cut(s)	77, 373, 557, 596, 650, 773
Hpy8I	GTNNAC	4 cut(s)	406, 428, 443, 471
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	182, 484, 698, 829
HpyCH4III	ACNGT	3 cut(s)	39, 674, 696
HpyCH4IV	ACGT	1 cut(s)	800
HpyCH4V	TGCA	7 cut(s)	271, 435, 443, 732, 737, 788, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 449, 715, 870
HpyF3I	CTNAG	3 cut(s)	350, 540, 720
HpySE526I	ACGT	1 cut(s)	800
Hsp92II	CATG	5 cut(s)	91, 271, 376, 483, 741
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	256, 276
LmnI	GCTCC	2 cut(s)	43, 361
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	2 cut(s)	91, 617
MaeI	CTAG	1 cut(s)	874
MaeII	ACGT	1 cut(s)	800
MaeIII	GTNAC	4 cut(s)	202, 461, 679, 749
MalI	GATC	2 cut(s)	258, 278
MboI	GATC	2 cut(s)	256, 276
MboII	GAAGA	6 cut(s)	133, 427, 430, 579, 586, 697
MhlI	GDGCHC	3 cut(s)	48, 388, 445
MluCI	AATT	4 cut(s)	367, 454, 493, 511
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	2 cut(s)	21, 531
MnlI	CCTC	7 cut(s)	85, 106, 535, 598, 693, 737, 776
Mph1103I	ATGCAT	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	3 cut(s)	30, 69, 306
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	3 cut(s)	293, 410, 466
MspR9I	CCNGG	3 cut(s)	134, 410, 639
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	2 cut(s)	134, 639
MwoI	GCNNNNNNNGC	4 cut(s)	228, 449, 715, 870
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	256, 276
NlaIII	CATG	5 cut(s)	91, 271, 376, 483, 741
NlaIV	GGNNCC	3 cut(s)	363, 636, 717
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	461
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	2 cut(s)	271, 741
PagI	TCATGA	1 cut(s)	372
PctI	GAATGC	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	4 cut(s)	155, 553, 583, 646
PflMI	CCANNNNNTGG	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	465
PkrI	GCNGC	3 cut(s)	224, 764, 790
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	2 cut(s)	132, 637
PspGI	CCWGG	2 cut(s)	132, 637
PspN4I	GGNNCC	3 cut(s)	363, 636, 717
PspPI	GGNCC	2 cut(s)	707, 716
PstI	CTGCAG	1 cut(s)	790
RsaI	GTAC	6 cut(s)	149, 170, 193, 427, 667, 779
RsaNI	GTAC	6 cut(s)	148, 169, 192, 426, 666, 778
SaqAI	TTAA	3 cut(s)	30, 69, 306
SatI	GCNGC	3 cut(s)	223, 763, 789
Sau3AI	GATC	2 cut(s)	256, 276
Sau96I	GGNCC	2 cut(s)	707, 716
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	134, 410, 639
SduI	GDGCHC	3 cut(s)	48, 388, 445
SfaNI	GCATC	2 cut(s)	91, 617
SfcI	CTRYAG	1 cut(s)	786
SfiI	GGCCNNNNNGGCC	1 cut(s)	715
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	4 cut(s)	367, 454, 493, 511
SsiI	CCGC	4 cut(s)	222, 677, 763, 781
SspMI	CTAG	1 cut(s)	874
StyD4I	CCNGG	3 cut(s)	132, 408, 637
StyI	CCWWGG	2 cut(s)	87, 357
TaaI	ACNGT	3 cut(s)	39, 674, 696
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	2 cut(s)	158, 649
TasI	AATT	4 cut(s)	367, 454, 493, 511
TauI	GCSGC	2 cut(s)	225, 765
TfiI	GAWTC	4 cut(s)	155, 553, 583, 646
Tru1I	TTAA	3 cut(s)	30, 69, 306
Tru9I	TTAA	3 cut(s)	30, 69, 306
TscAI	CASTG	5 cut(s)	505, 677, 701, 717, 819
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	4 cut(s)	168, 201, 361, 389
TspRI	CASTG	5 cut(s)	505, 677, 701, 717, 819
Van91I	CCANNNNNTGG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	441
XceI	RCATGY	2 cut(s)	271, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	1 cut(s)	874
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.