Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Forward (+)

12103672 .. 12106262

Gene Structure 2591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAATAACGATTTGTGGTTACCTGAAGAGGACTTCAAGGGTCTACCGGATAATTTCCTTGATAATCTCGTTGATCCTACCAATGATGTTTCTGTAGAAGATATAGAGACCGGCGATGATGAGGGAGATTGGGATGCCAAATTTCAAAAGCTCGTACCTCCACCATTGGATGAGCTAATGAGTTTGTCCTATGAGTTCACTTGCAATGGACAGCGTGTGCAAGTTCAGAAGCATGTGCCAATTTTGAAGCAGTCGAGTTCTTCAGAAGTCTTCTCTACTGTTGATAACTCCCCTCCTAATGTCAAAGTCTCAAAGTTGTTGCAATCTTTAAGCCCAGTCTCAGTCCTCAAGAACACCAACGGTTCTGGCTCACCCCAAAACCCAAACGGAGATCAGAAACTGGCCTTTCTCGTGAAAGGCATCAGAAGCAAGCGCAAACGCCCCACACTACTGAGAGTTACATTCCTCAAATCATTTCTATTAGAGATGTCACAGCAGTTTGCTCCGGATGAATCTGAATCTTCTGAGATTTCCGCCTTGAAGAAACGCAAGAAGAACAAGAGTCGTCGCTTGAAATGCACTCATTGCGAGACAACCACTACCCCGCAGTGGAGGGAAGGACCTAATGGGCGTAAAACCCTTTGCAATGCTTGTGGAATCCGCTTTAGATCGGGCCGTCTTGTTTTAGAATACCGTCCAGCAGCAAGCCCGACCTTCATCCCAACCGTGCATTCAAATTTGCACAAGAAGATCATATATATGAGAATGAAAGATAACGACCAGTTTGATACCAGAAAGATCCGTGCTGAGACATCCGGACCAGAGACTAGATCAAGGCTTCGTAACTTCGGCAGACCAATGAGTTATGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

291

Amino Acids

33.02

Weight (kDa)

9.38

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	193 - 227	7.3e-17	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	43
AccIII	TCCGGA	2 cut(s)	505, 815
AciI	CCGC	3 cut(s)	534, 605, 661
AclWI	GGATC	2 cut(s)	68, 793
AcsI	RAATTY	2 cut(s)	140, 736
AcuI	CTGAAG	2 cut(s)	45, 246
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	6 cut(s)	37, 146, 247, 541, 574, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	715, 747
AluBI	AGCT	2 cut(s)	151, 175
AluI	AGCT	2 cut(s)	151, 175
Alw26I	GTCTC	6 cut(s)	101, 313, 343, 584, 803, 818
AlwI	GGATC	2 cut(s)	68, 793
AlwNI	CAGNNNCTG	1 cut(s)	400
Aor13HI	TCCGGA	2 cut(s)	505, 815
AoxI	GGCC	2 cut(s)	402, 673
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	2 cut(s)	140, 736
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	620, 673, 818
AsuHPI	GGTGA	1 cut(s)	363
AvaII	GGWCC	2 cut(s)	620, 818
BauI	CACGAG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	713
BceAI	ACGGC	1 cut(s)	660
BcoDI	GTCTC	6 cut(s)	101, 313, 343, 584, 803, 818
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme18I	GGWCC	2 cut(s)	620, 818
BmgT120I	GGNCC	3 cut(s)	620, 673, 818
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	124, 429
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	101
BsaWI	WCCGGW	3 cut(s)	46, 505, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	335, 405, 781
Bse3DI	GCAATG	3 cut(s)	211, 583, 652
BseAI	TCCGGA	2 cut(s)	505, 815
BseGI	GGATG	5 cut(s)	139, 175, 514, 717, 812
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	3 cut(s)	211, 583, 652
BseMII	CTCAG	4 cut(s)	354, 443, 516, 798
BseNI	ACTGG	3 cut(s)	335, 405, 781
BseXI	GCAGC	1 cut(s)	713
BshFI	GGCC	2 cut(s)	404, 675
BsiSI	CCGG	4 cut(s)	47, 111, 506, 816
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	6 cut(s)	101, 313, 343, 584, 803, 818
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	404, 675
Bso31I	GGTCTC	1 cut(s)	101
Bsp13I	TCCGGA	2 cut(s)	505, 815
Bsp143I	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
BspACI	CCGC	3 cut(s)	534, 605, 661
BspANI	GGCC	2 cut(s)	404, 675
BspCNI	CTCAG	4 cut(s)	353, 444, 517, 799
BspEI	TCCGGA	2 cut(s)	505, 815
BspPI	GGATC	2 cut(s)	68, 793
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	3 cut(s)	211, 583, 652
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	335, 405, 781
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
Bst4CI	ACNGT	4 cut(s)	280, 362, 695, 727
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	431, 706
BstDEI	CTNAG	4 cut(s)	340, 452, 525, 807
BstEII	GGTNACC	1 cut(s)	18
BstF5I	GGATG	5 cut(s)	139, 175, 514, 717, 812
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	6 cut(s)	76, 394, 671, 753, 801, 833
BstMAI	GTCTC	6 cut(s)	101, 313, 343, 584, 803, 818
BstMBI	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	426, 576, 585
BstNSI	RCATGY	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	713
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	404, 675
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	5 cut(s)	139, 175, 514, 717, 812
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	1 cut(s)	614
Cac8I	GCNNGC	2 cut(s)	431, 706
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	620, 673, 818
Csp6I	GTAC	1 cut(s)	155
CspCI	CAANNNNNGTGG	2 cut(s)	634, 669
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	8 cut(s)	151, 175, 333, 369, 404, 675, 708, 838
CviKI_1	RGCY	8 cut(s)	151, 175, 333, 369, 404, 675, 708, 838
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	4 cut(s)	340, 452, 525, 807
DpnI	GATC	6 cut(s)	75, 393, 670, 752, 800, 832
DpnII	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	101
Eco47I	GGWCC	2 cut(s)	620, 818
Eco57I	CTGAAG	2 cut(s)	45, 246
Eco91I	GGTNACC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	18
FaeI	CATG	1 cut(s)	236
FaiI	YATR	8 cut(s)	104, 192, 234, 755, 757, 759, 761, 867
FatI	CATG	1 cut(s)	232
FauI	CCCGC	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	5 cut(s)	146, 182, 521, 704, 799
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	702
HaeIII	GGCC	2 cut(s)	404, 675
HapII	CCGG	4 cut(s)	47, 111, 506, 816
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	4 cut(s)	512, 518, 562, 657
HpaII	CCGG	4 cut(s)	47, 111, 506, 816
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	2 cut(s)	44, 198
Hpy188I	TCNGA	6 cut(s)	228, 265, 396, 425, 517, 526
Hpy188III	TCNNGA	4 cut(s)	349, 412, 506, 816
Hpy8I	GTNNAC	2 cut(s)	44, 198
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	2 cut(s)	611, 724
HpyCH4III	ACNGT	4 cut(s)	280, 362, 695, 727
HpyCH4V	TGCA	7 cut(s)	204, 220, 322, 579, 645, 730, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	426, 576, 585
HpyF3I	CTNAG	4 cut(s)	340, 452, 525, 807
Hsp92II	CATG	1 cut(s)	236
HspAI	GCGC	1 cut(s)	433
Kpn2I	TCCGGA	2 cut(s)	505, 815
Kzo9I	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	1 cut(s)	713
LweI	GCATC	2 cut(s)	124, 429
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	4 cut(s)	18, 457, 489, 842
MalI	GATC	6 cut(s)	75, 393, 670, 752, 800, 832
MboI	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
MboII	GAAGA	8 cut(s)	38, 110, 252, 262, 513, 553, 565, 760
MflI	RGATCY	1 cut(s)	798
MluCI	AATT	4 cut(s)	52, 140, 240, 736
MlyI	GAGTC	1 cut(s)	571
MnlI	CCTC	7 cut(s)	22, 115, 168, 303, 356, 476, 606
MroI	TCCGGA	2 cut(s)	505, 815
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	758
MspI	CCGG	4 cut(s)	47, 111, 506, 816
Mva1269I	GAATGC	1 cut(s)	730
MwoI	GCNNNNNNNGC	3 cut(s)	426, 576, 585
NdeII	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
NlaIII	CATG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	489
NspI	RCATGY	1 cut(s)	236
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	3 cut(s)	512, 518, 657
PkrI	GCNGC	1 cut(s)	703
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
PspEI	GGTNACC	1 cut(s)	18
PspPI	GGNCC	3 cut(s)	620, 673, 818
PspPPI	RGGWCCY	1 cut(s)	620
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	798
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	758
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	6 cut(s)	73, 391, 668, 750, 798, 830
Sau96I	GGNCC	3 cut(s)	620, 673, 818
SchI	GAGTC	1 cut(s)	571
SetI	ASST	6 cut(s)	25, 153, 160, 177, 625, 716
SfaNI	GCATC	2 cut(s)	124, 429
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	620, 818
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	52, 140, 240, 736
SsiI	CCGC	3 cut(s)	534, 605, 661
SspMI	CTAG	1 cut(s)	828
TaaI	ACNGT	4 cut(s)	280, 362, 695, 727
TaqI	TCGA	1 cut(s)	254
TasI	AATT	4 cut(s)	52, 140, 240, 736
TfiI	GAWTC	3 cut(s)	512, 518, 657
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	614
TseFI	GTSAC	1 cut(s)	489
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	489
TspDTI	ATGAA	4 cut(s)	17, 525, 706, 782
TspGWI	ACGGA	2 cut(s)	402, 791
TspRI	CASTG	1 cut(s)	614
VpaK11BI	GGWCC	2 cut(s)	620, 818
XapI	RAATTY	2 cut(s)	140, 736
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.