Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Reverse (-)

2485848 .. 2488085

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAATTGGTTACCTGAAGCTGAAGCTGAGGATGACTTCAAAGGTCTTCTCTCTGGTGATTTCTTTGATGATCTCATCAATCACCTTGACGTCCCTCTTGATGACATTGATACCACCAATGGTGAAGGAGATTGGGTTGACAGGTTTCAAGACCTTGAGCCTCCTCCCATGGATATGTTCCCCACTTTGCCTTCTGACCTCACCTCTTGCGGCTCTGGCATGGCCAAGGCCCCTCGTGTGGATATTCAAAGGAACATTCCTGCTTTGAAACAGTCCTATTCTTCTGAAGCCTTGTCCAGCACTCTCCACCAATCTTCAGCTCCTCCTGAAATCAAAGTTTCGAAACTATTTCAGTCTTTAAGTCCAGTGTCAGTTCTCGAGAACAGTTATGGTTCTCTCTCGACCCACAACAATGGATCTCAGAGATTGGCTTTCCCTGTGAAAGGCATGAGAAGCAAGCGCAAACGCCCCACAACACTGAGACTTAGCTACCTTTTCCCCTCTGAACCCCGAAAGCCCGAGAAGTCAACCCCGGGCAAACCTGAATCCGAGTGTTACTTTTCTTCTGAGCAACATGCCAAGAAGAAACGCAAGATCCACCTGACCACCCGCACGGTCTCTTCCACTCTGGAGGCAAGCAACTCGGATGGGATAGTCCGCAAATGCACTCATTGCGAGACAACCAAGACCCCACAGTGGAGGGAAGGACCCAGTGGACCGAAGACCCTCTGCAATGCTTGCGGAGTGAGGTTCAGATCTGGTCGCCTAGTTCCAGAATACCGACCAGCCTCAAGCCCCACCTTCATCCCAGCTGTGCATTCAAACTCACACAGGAAGATCATTGAGATGAGAAGGAAGGACGACGAACAGTTTGATAGCAGCATGATTCGGGCAGTGATATCCAGAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

303

Amino Acids

33.84

Weight (kDa)

8.67

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	222 - 256	3e-17	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
AciI	CCGC	4 cut(s)	210, 610, 658, 741
AclWI	GGATC	2 cut(s)	424, 589
AcoI	YGGCCR	1 cut(s)	222
AcuI	CTGAAG	4 cut(s)	36, 42, 300, 306
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	3 cut(s)	238, 443, 696
AgsI	TTSAA	5 cut(s)	40, 149, 248, 268, 822
AluBI	AGCT	5 cut(s)	20, 26, 320, 489, 812
AluI	AGCT	5 cut(s)	20, 26, 320, 489, 812
Alw26I	GTCTC	3 cut(s)	475, 622, 671
AlwI	GGATC	2 cut(s)	424, 589
Ama87I	CYCGRG	3 cut(s)	377, 518, 532
AoxI	GGCC	2 cut(s)	222, 228
ApeKI	GCWGC	1 cut(s)	879
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	3 cut(s)	229, 707, 716
AsuC2I	CCSGG	2 cut(s)	533, 534
AsuHPI	GGTGA	4 cut(s)	68, 74, 134, 193
AsuII	TTCGAA	1 cut(s)	341
AvaI	CYCGRG	3 cut(s)	377, 518, 532
AvaII	GGWCC	2 cut(s)	707, 716
BalI	TGGCCA	1 cut(s)	224
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	38, 728
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BcnI	CCSGG	2 cut(s)	533, 534
BcoDI	GTCTC	3 cut(s)	475, 622, 671
BfaI	CTAG	1 cut(s)	767
BglII	AGATCT	1 cut(s)	755
BisI	GCNGC	2 cut(s)	211, 880
BlsI	GCNGC	2 cut(s)	212, 881
Bme1390I	CCNGG	2 cut(s)	533, 534
Bme18I	GGWCC	2 cut(s)	707, 716
BmeT110I	CYCGRG	3 cut(s)	377, 518, 532
BmgT120I	GGNCC	3 cut(s)	229, 707, 716
BmiI	GGNNCC	2 cut(s)	231, 709
BmrFI	CCNGG	2 cut(s)	533, 534
BmrI	ACTGGG	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	2 cut(s)	38, 728
BpmI	CTGGAG	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	341
BpuEI	CTTGAG	2 cut(s)	176, 775
BpuMI	CCSGG	2 cut(s)	533, 534
BsaHI	GRCGYC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	4 cut(s)	168, 225, 531, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 443, 696
Bse1I	ACTGG	2 cut(s)	365, 711
Bse3DI	GCAATG	2 cut(s)	670, 739
BseDI	CCNNGG	4 cut(s)	168, 225, 531, 532
BseGI	GGATG	3 cut(s)	37, 652, 804
BseLI	CCNNNNNNNGG	3 cut(s)	238, 443, 696
BseMI	GCAATG	2 cut(s)	670, 739
BseMII	CTCAG	4 cut(s)	18, 434, 470, 558
BseNI	ACTGG	2 cut(s)	365, 711
BseRI	GAGGAG	2 cut(s)	153, 312
BseXI	GCAGC	1 cut(s)	891
BseYI	CCCAGC	1 cut(s)	808
BshFI	GGCC	2 cut(s)	224, 230
BsiHKCI	CYCGRG	3 cut(s)	377, 518, 532
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	3 cut(s)	238, 443, 696
BsmAI	GTCTC	3 cut(s)	475, 622, 671
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	224, 230
Bso31I	GGTCTC	1 cut(s)	622
BsoBI	CYCGRG	3 cut(s)	377, 518, 532
Bsp119I	TTCGAA	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	70, 416, 594, 755, 837
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	4 cut(s)	210, 610, 658, 741
BspANI	GGCC	2 cut(s)	224, 230
BspCNI	CTCAG	4 cut(s)	19, 433, 471, 559
BspLI	GGNNCC	2 cut(s)	231, 709
BspPI	GGATC	2 cut(s)	424, 589
BspT104I	TTCGAA	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	622
BsrDI	GCAATG	2 cut(s)	670, 739
BsrI	ACTGG	2 cut(s)	365, 711
BssECI	CCNNGG	4 cut(s)	168, 225, 531, 532
BssMI	GATC	5 cut(s)	70, 416, 594, 755, 837
BssNI	GRCGYC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	168, 225
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	5 cut(s)	273, 386, 616, 696, 870
Bst6I	CTCTTC	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	90
BstAPI	GCANNNNNTGC	2 cut(s)	672, 738
BstBI	TTCGAA	1 cut(s)	341
BstC8I	GCNNGC	3 cut(s)	458, 637, 739
BstDEI	CTNAG	5 cut(s)	27, 420, 479, 485, 567
BstDSI	CCRYGG	1 cut(s)	168
BstEII	GGTNACC	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	37, 652, 804
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	5 cut(s)	73, 419, 597, 758, 840
BstMAI	GTCTC	3 cut(s)	475, 622, 671
BstMBI	GATC	5 cut(s)	70, 416, 594, 755, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 453, 672, 738
BstNSI	RCATGY	1 cut(s)	578
BstPI	GGTNACC	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	531, 532
BstV1I	GCAGC	1 cut(s)	891
BstV2I	GAAGAC	2 cut(s)	38, 728
BstX2I	RGATCY	3 cut(s)	416, 594, 755
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	3 cut(s)	416, 594, 755
BsuRI	GGCC	2 cut(s)	224, 230
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	37, 652, 804
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	5 cut(s)	372, 476, 701, 718, 900
Cac8I	GCNNGC	3 cut(s)	458, 637, 739
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	229, 707, 716
Cfr9I	CCCGGG	1 cut(s)	532
CviAII	CATG	5 cut(s)	169, 220, 448, 575, 883
DdeI	CTNAG	5 cut(s)	27, 420, 479, 485, 567
DpnI	GATC	5 cut(s)	72, 418, 596, 757, 839
DpnII	GATC	5 cut(s)	70, 416, 594, 755, 837
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	625
EarI	CTCTTC	1 cut(s)	625
Eco130I	CCWWGG	2 cut(s)	168, 225
Eco31I	GGTCTC	1 cut(s)	622
Eco32I	GATATC	1 cut(s)	900
Eco47I	GGWCC	2 cut(s)	707, 716
Eco57I	CTGAAG	4 cut(s)	36, 42, 300, 306
Eco88I	CYCGRG	3 cut(s)	377, 518, 532
Eco91I	GGTNACC	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	2 cut(s)	229, 707
EcoO65I	GGTNACC	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	900
EcoT14I	CCWWGG	2 cut(s)	168, 225
ErhI	CCWWGG	2 cut(s)	168, 225
FaeI	CATG	5 cut(s)	172, 223, 451, 578, 886
FaiI	YATR	7 cut(s)	170, 176, 221, 390, 449, 576, 884
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	5 cut(s)	168, 219, 447, 574, 882
FauI	CCCGC	1 cut(s)	617
Fnu4HI	GCNGC	2 cut(s)	211, 880
FokI	GGATG	3 cut(s)	44, 659, 791
Fsp4HI	GCNGC	2 cut(s)	211, 880
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	2 cut(s)	211, 880
GsaI	CCCAGC	1 cut(s)	812
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	224, 230
HapII	CCGG	1 cut(s)	533
HhaI	GCGC	1 cut(s)	462
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	172, 223, 451, 578, 886
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	2 cut(s)	139, 528
HindII	GTYRAC	2 cut(s)	139, 528
HinfI	GANTC	2 cut(s)	545, 886
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	4 cut(s)	68, 74, 134, 193
Hpy166II	GTNNAC	3 cut(s)	139, 528, 716
Hpy188I	TCNGA	8 cut(s)	196, 286, 423, 505, 550, 568, 646, 755
Hpy188III	TCNNGA	9 cut(s)	98, 149, 326, 377, 379, 400, 629, 773, 903
Hpy8I	GTNNAC	3 cut(s)	139, 528, 716
Hpy99I	CGWCG	1 cut(s)	866
HpyAV	CCTTC	6 cut(s)	119, 201, 698, 811, 846, 850
HpyCH4III	ACNGT	5 cut(s)	273, 386, 616, 696, 870
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	666, 732, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 453, 672, 738
HpyF3I	CTNAG	5 cut(s)	27, 420, 479, 485, 567
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	172, 223, 451, 578, 886
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	5 cut(s)	70, 416, 594, 755, 837
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	891
MaeI	CTAG	1 cut(s)	767
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	9, 554
MalI	GATC	5 cut(s)	72, 418, 596, 757, 839
MboI	GATC	5 cut(s)	70, 416, 594, 755, 837
MboII	GAAGA	8 cut(s)	38, 273, 306, 555, 595, 612, 733, 847
MflI	RGATCY	3 cut(s)	416, 594, 755
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	1 cut(s)	4
MluNI	TGGCCA	1 cut(s)	224
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	3 cut(s)	173, 411, 845
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	533, 534
Mva1269I	GAATGC	1 cut(s)	817
MwoI	GCNNNNNNNGC	4 cut(s)	216, 453, 672, 738
NciI	CCSGG	2 cut(s)	533, 534
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	5 cut(s)	70, 416, 594, 755, 837
NlaIII	CATG	5 cut(s)	172, 223, 451, 578, 886
NlaIV	GGNNCC	2 cut(s)	231, 709
NspI	RCATGY	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	341
PaeR7I	CTCGAG	1 cut(s)	377
PctI	GAATGC	1 cut(s)	817
PfeI	GAWTC	2 cut(s)	545, 886
PkrI	GCNGC	2 cut(s)	212, 881
PpuMI	RGGWCCY	1 cut(s)	707
Psp5II	RGGWCCY	1 cut(s)	707
PspEI	GGTNACC	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	808
PspN4I	GGNNCC	2 cut(s)	231, 709
PspPI	GGNCC	3 cut(s)	229, 707, 716
PspPPI	RGGWCCY	1 cut(s)	707
PsuI	RGATCY	3 cut(s)	416, 594, 755
PvuII	CAGCTG	1 cut(s)	812
RseI	CAYNNNNRTG	3 cut(s)	173, 411, 845
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	211, 880
Sau3AI	GATC	5 cut(s)	70, 416, 594, 755, 837
Sau96I	GGNCC	3 cut(s)	229, 707, 716
ScrFI	CCNGG	2 cut(s)	533, 534
Sfr274I	CTCGAG	1 cut(s)	377
SfuI	TTCGAA	1 cut(s)	341
SinI	GGWCC	2 cut(s)	707, 716
SlaI	CTCGAG	1 cut(s)	377
SmaI	CCCGGG	1 cut(s)	534
SmiMI	CAYNNNNRTG	3 cut(s)	173, 411, 845
SmlI	CTYRAG	3 cut(s)	155, 377, 790
SmoI	CTYRAG	3 cut(s)	155, 377, 790
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	4 cut(s)	210, 610, 658, 741
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	2 cut(s)	531, 532
StyI	CCWWGG	2 cut(s)	168, 225
TaaI	ACNGT	5 cut(s)	273, 386, 616, 696, 870
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	341, 378, 401
TaqII	GACCGA	1 cut(s)	733
TasI	AATT	1 cut(s)	4
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	545, 886
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	5 cut(s)	372, 483, 701, 718, 900
TseI	GCWGC	1 cut(s)	879
TspDTI	ATGAA	2 cut(s)	17, 793
TspMI	CCCGGG	1 cut(s)	532
TspRI	CASTG	5 cut(s)	372, 483, 701, 718, 900
VpaK11BI	GGWCC	2 cut(s)	707, 716
XagI	CCTNNNNNAGG	1 cut(s)	441
XceI	RCATGY	1 cut(s)	578
XhoI	CTCGAG	1 cut(s)	377
XmaI	CCCGGG	1 cut(s)	532
XspI	CTAG	1 cut(s)	767
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.