Rroxscaffold_1G00021680

GATA transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
26664151 .. 26668427
4277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021680.1

Sequence Viewer

Length: 927 bp
ATGACGGCGGTCTCTGCTGACGTCACCAAGCTCCCAAAGCGTGAGAGTACTATGGATGCTTTGCCTTTGGATGATAACATTAATCAACTCTTGGAGCACTTCTACGATGACGATACCATTAAGGCTCTTGATTTCCCCATGGAAGACATTGACGCCACAGACGAAGATTGGAAGACTCAACTCCAAGGCCTTGAGCCATACTATGAATCAAATTTCCAGTACCTTTCCACTTCGTATGAAGGTACTTCCGGTGTTACTGCTATAACCAGCGGCGGCAGAAGCAGTCTCCAAAGCAATGATTGTTTTGATCGAAAGCACATGCACCTGATCCCAATCCATAGTCCAGTGTCTGTCCTTAAAAGCCAGAGTGAAAGCCAAAGTTCTGGTTCTGCTCAACACCTGAGAACCTTGGAGCCCAATTTCATCAACATCAGAGCCTCTGAGCCCAGTTTCGTCAACCCGGTGAAGAAGAAGCGTACACAATGCAGGCGTGCACGCCCTGCTAATTTCAGTAACCGGTTCACGTTCCCTTGTGCCTCGTCCAATTCCTCTGTCTCCGACAATTTTTATCGTTTTGAAACCTTTCTGACTGAGGAGATGATGAACCCTGACAAGAGAAAACAGAAGAAAAAGAATCCCTCTTTGCAGGAAACAGGTGAGATTAGTGAGACCAAAAGATCCATGGAACCAGGCGAGAGTCGCGAAACTAAAAGATGCACGCATTGTGCGGTTACGAAGACCCCACAATGGAGGGAAGGACCACTAGGGCCGAAGACCCTCTGCAATGCATGTGGGGTTCGTTACAGGTCCGGCCGCCTCTTTCCTGAGTACCGTCCTGCAGCAAGTCCTACATTCGTTCCAGCAGTGCATTCAAACTCCCACAAGAAGGTTATAGAGTTGAGAAATAAGGGTTGCCAAGGGAGCTAG

Protein Analysis

308

Amino Acids

34.77

Weight (kDa)

8.54

Isoelectric Point (pI)

63.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 239 - 272 3.7e-16 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccII CGCG 1 cut(s) 702
AciI CCGC 5 cut(s) 8, 270, 273, 728, 814
AclWI GGATC 2 cut(s) 322, 672
AcoI YGGCCR 1 cut(s) 811
AcsI RAATTY 1 cut(s) 211
AcyI GRCGYC 2 cut(s) 21, 153
AfaI GTAC 5 cut(s) 49, 221, 244, 478, 830
AfiI CCNNNNNNNGG 2 cut(s) 747, 886
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 2 cut(s) 578, 873
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 2 cut(s) 31, 924
AluI AGCT 2 cut(s) 31, 924
Alw21I GWGCWC 2 cut(s) 99, 496
Alw26I GTCTC 4 cut(s) 16, 290, 559, 662
Alw44I GTGCAC 1 cut(s) 492
AlwI GGATC 2 cut(s) 322, 672
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 3 cut(s) 187, 767, 811
ApaLI GTGCAC 1 cut(s) 492
ApeKI GCWGC 1 cut(s) 839
ApoI RAATTY 1 cut(s) 211
AseI ATTAAT 1 cut(s) 81
AsiGI ACCGGT 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 3 cut(s) 758, 767, 807
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 3 cut(s) 16, 475, 668
AvaII GGWCC 2 cut(s) 758, 807
BaeGI GKGCMC 1 cut(s) 496
BanII GRGCYC 2 cut(s) 417, 447
BbsI GAAGAC 4 cut(s) 150, 179, 743, 779
Bbv12I GWGCWC 2 cut(s) 99, 496
BbvI GCAGC 1 cut(s) 851
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 4 cut(s) 16, 290, 559, 662
BfaI CTAG 2 cut(s) 764, 925
BfmI CTRYAG 1 cut(s) 837
BisI GCNGC 4 cut(s) 271, 274, 814, 840
BlsI GCNGC 4 cut(s) 272, 275, 815, 841
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 2 cut(s) 461, 690
Bme18I GGWCC 2 cut(s) 758, 807
BmgT120I GGNCC 3 cut(s) 758, 767, 807
BmiI GGNNCC 2 cut(s) 414, 687
BmrFI CCNGG 2 cut(s) 461, 690
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 46, 704
BmuI ACTGGG 1 cut(s) 441
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 4 cut(s) 150, 179, 743, 779
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 461
BsaBI GATNNNNATC 1 cut(s) 332
BsaHI GRCGYC 2 cut(s) 21, 153
BsaI GGTCTC 2 cut(s) 16, 662
BsaJI CCNNGG 5 cut(s) 138, 184, 408, 681, 916
BsaWI WCCGGW 2 cut(s) 248, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 747, 886
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 3 cut(s) 217, 344, 447
Bse3DI GCAATG 2 cut(s) 301, 790
Bse8I GATNNNNATC 1 cut(s) 332
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 5 cut(s) 138, 184, 408, 681, 916
BseGI GGATG 2 cut(s) 61, 76
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 2 cut(s) 747, 886
BseMI GCAATG 2 cut(s) 301, 790
BseMII CTCAG 4 cut(s) 392, 432, 582, 816
BseNI ACTGG 3 cut(s) 217, 344, 447
BseRI GAGGAG 1 cut(s) 608
BseSI GKGCMC 1 cut(s) 496
BseX3I CGGCCG 1 cut(s) 811
BseXI GCAGC 1 cut(s) 851
Bsh1236I CGCG 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 3 cut(s) 189, 769, 813
BshTI ACCGGT 1 cut(s) 516
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 2 cut(s) 99, 496
BsiSI CCGG 4 cut(s) 249, 461, 517, 810
BslI CCNNNNNNNGG 2 cut(s) 747, 886
BsmAI GTCTC 4 cut(s) 16, 290, 559, 662
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 3 cut(s) 189, 769, 813
Bso31I GGTCTC 2 cut(s) 16, 662
Bsp1286I GDGCHC 4 cut(s) 99, 417, 447, 496
Bsp143I GATC 3 cut(s) 307, 327, 677
Bsp19I CCATGG 2 cut(s) 138, 681
Bsp68I TCGCGA 1 cut(s) 702
BspACI CCGC 5 cut(s) 8, 270, 273, 728, 814
BspANI GGCC 3 cut(s) 189, 769, 813
BspCNI CTCAG 4 cut(s) 393, 433, 583, 817
BspFNI CGCG 1 cut(s) 702
BspLI GGNNCC 2 cut(s) 414, 687
BspMAI CTGCAG 1 cut(s) 841
BspPI GGATC 2 cut(s) 322, 672
BspTNI GGTCTC 2 cut(s) 16, 662
BsrDI GCAATG 2 cut(s) 301, 790
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 3 cut(s) 217, 344, 447
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 5 cut(s) 138, 184, 408, 681, 916
BssMI GATC 3 cut(s) 307, 327, 677
BssNI GRCGYC 2 cut(s) 21, 153
BssT1I CCWWGG 5 cut(s) 138, 184, 408, 681, 916
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 1 cut(s) 833
BstACI GRCGYC 2 cut(s) 21, 153
BstAPI GCANNNNNTGC 1 cut(s) 500
BstC8I GCNNGC 4 cut(s) 488, 492, 496, 719
BstDEI CTNAG 4 cut(s) 401, 441, 591, 825
BstDSI CCRYGG 2 cut(s) 138, 681
BstF5I GGATG 2 cut(s) 61, 76
BstFNI CGCG 1 cut(s) 702
BstKTI GATC 3 cut(s) 310, 330, 680
BstMAI GTCTC 4 cut(s) 16, 290, 559, 662
BstMBI GATC 3 cut(s) 307, 327, 677
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 6 cut(s) 14, 37, 279, 500, 699, 921
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 2 cut(s) 322, 792
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 459, 688
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 1 cut(s) 851
BstV2I GAAGAC 4 cut(s) 150, 179, 743, 779
BstX2I RGATCY 1 cut(s) 677
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 1 cut(s) 677
BstZI CGGCCG 1 cut(s) 811
BsuRI GGCC 3 cut(s) 189, 769, 813
BtgI CCRYGG 2 cut(s) 138, 681
BtsCI GGATG 2 cut(s) 61, 76
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 2 cut(s) 351, 870
BtuMI TCGCGA 1 cut(s) 702
Cac8I GCNNGC 4 cut(s) 488, 492, 496, 719
CaiI CAGNNNCTG 1 cut(s) 350
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 3 cut(s) 758, 767, 807
CseI GACGC 1 cut(s) 161
Csp6I GTAC 5 cut(s) 48, 220, 243, 477, 829
CspAI ACCGGT 1 cut(s) 516
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 4 cut(s) 139, 319, 682, 789
CviQI GTAC 5 cut(s) 48, 220, 243, 477, 829
DdeI CTNAG 4 cut(s) 401, 441, 591, 825
DpnI GATC 3 cut(s) 309, 329, 679
DpnII GATC 3 cut(s) 307, 327, 677
EaeI YGGCCR 1 cut(s) 811
EagI CGGCCG 1 cut(s) 811
EclXI CGGCCG 1 cut(s) 811
Eco130I CCWWGG 5 cut(s) 138, 184, 408, 681, 916
Eco147I AGGCCT 1 cut(s) 189
Eco24I GRGCYC 2 cut(s) 417, 447
Eco31I GGTCTC 2 cut(s) 16, 662
Eco47I GGWCC 2 cut(s) 758, 807
Eco52I CGGCCG 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 5 cut(s) 138, 184, 408, 681, 916
EcoT22I ATGCAT 1 cut(s) 790
EcoT38I GRGCYC 2 cut(s) 417, 447
ErhI CCWWGG 5 cut(s) 138, 184, 408, 681, 916
FaeI CATG 4 cut(s) 142, 322, 685, 792
FatI CATG 4 cut(s) 138, 318, 681, 788
Fnu4HI GCNGC 4 cut(s) 271, 274, 814, 840
FokI GGATG 2 cut(s) 68, 83
FriOI GRGCYC 2 cut(s) 417, 447
Fsp4HI GCNGC 4 cut(s) 271, 274, 814, 840
FspBI CTAG 2 cut(s) 764, 925
GluI GCNGC 4 cut(s) 271, 274, 814, 840
HaeIII GGCC 3 cut(s) 189, 769, 813
HapII CCGG 4 cut(s) 249, 461, 517, 810
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 2 cut(s) 21, 153
Hin1II CATG 4 cut(s) 142, 322, 685, 792
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 4 cut(s) 175, 206, 634, 697
HpaII CCGG 4 cut(s) 249, 461, 517, 810
HphI GGTGA 3 cut(s) 16, 475, 668
Hpy166II GTNNAC 4 cut(s) 457, 479, 494, 522
Hpy188I TCNGA 4 cut(s) 434, 442, 559, 588
Hpy188III TCNNGA 3 cut(s) 128, 701, 824
Hpy8I GTNNAC 4 cut(s) 457, 479, 494, 522
HpyAV CCTTC 3 cut(s) 233, 749, 880
HpyCH4III ACNGT 1 cut(s) 833
HpyCH4IV ACGT 2 cut(s) 21, 524
HpyCH4V TGCA 9 cut(s) 322, 486, 494, 646, 717, 783, 788, 839, 868
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 37, 279, 500, 699, 921
HpyF3I CTNAG 4 cut(s) 401, 441, 591, 825
HpySE526I ACGT 2 cut(s) 21, 524
Hsp92I GRCGYC 2 cut(s) 21, 153
Hsp92II CATG 4 cut(s) 142, 322, 685, 792
Kzo9I GATC 3 cut(s) 307, 327, 677
LmnI GCTCC 4 cut(s) 36, 94, 412, 921
Lsp1109I GCAGC 1 cut(s) 851
LweI GCATC 2 cut(s) 46, 704
MaeI CTAG 2 cut(s) 764, 925
MaeII ACGT 2 cut(s) 21, 524
MaeIII GTNAC 5 cut(s) 22, 253, 512, 730, 800
MalI GATC 3 cut(s) 309, 329, 679
MboI GATC 3 cut(s) 307, 327, 677
MboII GAAGA 8 cut(s) 155, 176, 184, 478, 481, 637, 748, 784
MflI RGATCY 1 cut(s) 677
MhlI GDGCHC 4 cut(s) 99, 417, 447, 496
MluCI AATT 5 cut(s) 211, 418, 505, 544, 562
MlyI GAGTC 2 cut(s) 169, 706
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 8 cut(s) 448, 547, 559, 586, 649, 744, 788, 827
Mph1103I ATGCAT 1 cut(s) 790
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 3 cut(s) 81, 120, 357
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 4 cut(s) 249, 461, 517, 810
MspR9I CCNGG 2 cut(s) 461, 690
Mva1269I GAATGC 1 cut(s) 868
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 6 cut(s) 14, 37, 279, 500, 699, 921
NciI CCSGG 1 cut(s) 461
NcoI CCATGG 2 cut(s) 138, 681
NdeII GATC 3 cut(s) 307, 327, 677
NlaIII CATG 4 cut(s) 142, 322, 685, 792
NlaIV GGNNCC 2 cut(s) 414, 687
NmuCI GTSAC 1 cut(s) 22
NruI TCGCGA 1 cut(s) 702
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 2 cut(s) 322, 792
PceI AGGCCT 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 206, 634
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 4 cut(s) 272, 275, 815, 841
PleI GAGTC 2 cut(s) 169, 705
PpsI GAGTC 2 cut(s) 169, 705
PshAI GACNNNNGTC 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 414, 687
PspPI GGNCC 3 cut(s) 758, 767, 807
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 677
RruI TCGCGA 1 cut(s) 702
RsaI GTAC 5 cut(s) 49, 221, 244, 478, 830
RsaNI GTAC 5 cut(s) 48, 220, 243, 477, 829
SaqAI TTAA 3 cut(s) 81, 120, 357
SatI GCNGC 4 cut(s) 271, 274, 814, 840
Sau3AI GATC 3 cut(s) 307, 327, 677
Sau96I GGNCC 3 cut(s) 758, 767, 807
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 169, 706
ScrFI CCNGG 2 cut(s) 461, 690
SduI GDGCHC 4 cut(s) 99, 417, 447, 496
SfaNI GCATC 2 cut(s) 46, 704
SfcI CTRYAG 1 cut(s) 837
SinI GGWCC 2 cut(s) 758, 807
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 5 cut(s) 211, 418, 505, 544, 562
SseBI AGGCCT 1 cut(s) 189
SsiI CCGC 5 cut(s) 8, 270, 273, 728, 814
SspMI CTAG 2 cut(s) 764, 925
StuI AGGCCT 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 459, 688
StyI CCWWGG 5 cut(s) 138, 184, 408, 681, 916
TaaI ACNGT 1 cut(s) 833
TaiI ACGT 2 cut(s) 24, 527
TaqI TCGA 1 cut(s) 310
TasI AATT 5 cut(s) 211, 418, 505, 544, 562
TatI WGTACW 1 cut(s) 47
TauI GCSGC 3 cut(s) 273, 276, 816
TfiI GAWTC 2 cut(s) 206, 634
Tru1I TTAA 3 cut(s) 81, 120, 357
Tru9I TTAA 3 cut(s) 81, 120, 357
TscAI CASTG 2 cut(s) 351, 870
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 839
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 219, 252, 412, 617
TspRI CASTG 2 cut(s) 351, 870
VneI GTGCAC 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 758, 807
VspI ATTAAT 1 cut(s) 81
XapI RAATTY 1 cut(s) 211
XceI RCATGY 2 cut(s) 322, 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 2 cut(s) 764, 925
ZraI GACGTC 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.