Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Forward (+)

63305523 .. 63308181

Gene Structure 2659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G036130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGACGGCGGTCTCTGCTGACGTCACCAAGCTTCCAAAGCGTGAGAGTACTATGGATGCTTTGCCTTTGGATGATAACATTAATCAACTCTTGGAGCACTTCTACGATGACGATACCATTAAGGCTCTTGATTTCCCCATGGAAGACATTGACGCCACAGACGAAGATTGGAAGACTCAACTCCAAGGCCTTGAGCCATACTATGAATCAAATTTCCAGTACCTTTCCACTTCGTATGAAGGTACTTCCGGTGTTACTGCTATAACCAGCGGCGGCAGAAGCAGTCTCCAAAGCAATGATTGTTTTGATCGAAAGCACCTGCACCTGATCCCAATCCATAGTCCAGTGTCTGTCCTTAAAAGCCAGAGTGATCTCTTGAAGCTGATTGTCACCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

132

Amino Acids

14.8

Weight (kDa)

4.43

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	327
AatII	GACGTC	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	327
AciI	CCGC	3 cut(s)	8, 270, 273
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	2 cut(s)	21, 153
AfaI	GTAC	3 cut(s)	49, 221, 244
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	2 cut(s)	31, 382
AluI	AGCT	2 cut(s)	31, 382
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	2 cut(s)	16, 290
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	211
AseI	ATTAAT	1 cut(s)	81
AsuHPI	GGTGA	2 cut(s)	16, 382
BbsI	GAAGAC	2 cut(s)	150, 179
Bbv12I	GWGCWC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	16, 290
BfuAI	ACCTGC	1 cut(s)	327
BisI	GCNGC	2 cut(s)	271, 274
BlsI	GCNGC	2 cut(s)	272, 275
BmcAI	AGTACT	1 cut(s)	49
BmsI	GCATC	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	2 cut(s)	150, 179
BpuEI	CTTGAG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	332
BsaHI	GRCGYC	2 cut(s)	21, 153
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	138, 184
BsaWI	WCCGGW	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	217, 344
Bse3DI	GCAATG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	138, 184
BseGI	GGATG	2 cut(s)	61, 76
BseJI	GATNNNNATC	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	301
BseNI	ACTGG	2 cut(s)	217, 344
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	249
BsmAI	GTCTC	2 cut(s)	16, 290
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	307, 327, 370
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	3 cut(s)	8, 270, 273
BspANI	GGCC	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	217, 344
BssECI	CCNNGG	2 cut(s)	138, 184
BssMI	GATC	3 cut(s)	307, 327, 370
BssNI	GRCGYC	2 cut(s)	21, 153
BssT1I	CCWWGG	2 cut(s)	138, 184
BstACI	GRCGYC	2 cut(s)	21, 153
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	61, 76
BstKTI	GATC	3 cut(s)	310, 330, 373
BstMAI	GTCTC	2 cut(s)	16, 290
BstMBI	GATC	3 cut(s)	307, 327, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 37, 279
BstPAI	GACNNNNGTC	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	150, 179
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	61, 76
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	350
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	48, 220, 243
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	6 cut(s)	31, 125, 189, 196, 363, 382
CviKI_1	RGCY	6 cut(s)	31, 125, 189, 196, 363, 382
CviQI	GTAC	3 cut(s)	48, 220, 243
DpnI	GATC	3 cut(s)	309, 329, 372
DpnII	GATC	3 cut(s)	307, 327, 370
Eco130I	CCWWGG	2 cut(s)	138, 184
Eco147I	AGGCCT	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	138, 184
ErhI	CCWWGG	2 cut(s)	138, 184
FaeI	CATG	1 cut(s)	142
FaiI	YATR	7 cut(s)	53, 140, 199, 204, 237, 263, 339
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	271, 274
FokI	GGATG	2 cut(s)	68, 83
Fsp4HI	GCNGC	2 cut(s)	271, 274
GluI	GCNGC	2 cut(s)	271, 274
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	21, 153
Hin1II	CATG	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	175, 206
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	16, 382
Hpy188III	TCNNGA	2 cut(s)	128, 376
HpyAV	CCTTC	1 cut(s)	233
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 37, 279
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	2 cut(s)	21, 153
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	307, 327, 370
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	7 cut(s)	230, 262, 280, 332, 338, 357, 377
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	22, 253, 388
MalI	GATC	3 cut(s)	309, 329, 372
MboI	GATC	3 cut(s)	307, 327, 370
MboII	GAAGA	3 cut(s)	155, 176, 184
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	169
MseI	TTAA	4 cut(s)	81, 120, 357, 397
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	14, 37, 279
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	307, 327, 370
NlaIII	CATG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	22, 388
PaqCI	CACCTGC	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	272, 275
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	81
PstNI	CAGNNNCTG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	49, 221, 244
RsaNI	GTAC	3 cut(s)	48, 220, 243
SaqAI	TTAA	4 cut(s)	81, 120, 357, 397
SatI	GCNGC	2 cut(s)	271, 274
Sau3AI	GATC	3 cut(s)	307, 327, 370
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	7 cut(s)	24, 33, 225, 244, 321, 327, 384
SfaNI	GCATC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	211
SseBI	AGGCCT	1 cut(s)	189
SsiI	CCGC	3 cut(s)	8, 270, 273
StuI	AGGCCT	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	138, 184
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	310
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	2 cut(s)	273, 276
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	4 cut(s)	81, 120, 357, 397
Tru9I	TTAA	4 cut(s)	81, 120, 357, 397
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	2 cut(s)	22, 388
Tsp45I	GTSAC	2 cut(s)	22, 388
TspDTI	ATGAA	2 cut(s)	219, 252
TspRI	CASTG	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	1 cut(s)	211
ZraI	GACGTC	1 cut(s)	22
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.