Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Reverse (-)

10979571 .. 10983147

Gene Structure 3577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1119800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACGGCTGTCTCCGCTGACGTCGCCAAGCTAACGAAGCGTGAGAATATTAGTGACATGGATGGTTCTTTGCCCGCCGATGGGGCCTTCAATTACGAGAGCATCCTCAGCGCTCTCGATTTCCCAATGGAAGACATTGATGACAGTGTCGAAGATAACGATTGGGACACGAAGTTCCAAGACATAGAGCCGCCGCCTAACATTGATCAGTTGCTTGGTCCAGGAATTTTTAGTTATGATGACGAAAAGAAACATACCAACCTCTCCACTCCGTATGGACATATGTATCAGCGACCGCAATTCCCAAGTGTTACTTGTGAAACCATCCGCAGCAGAGTTAGCCTTCGCAAAGATGGCCTTGAAAGCATTGGCTCTTGTGCTGCTCAATTTGAGCCCAAATTTGAAAAGCGCACCCGAAGCAAGCTTTCACGAAGCAGGCGTGCAAACCCAATTATTTTCAGTACACAGTTCATCCTCAGTACCTCATCCAATTCCTCTGCCTCTGAAAATTTATATCGTTGGGATGCTTGTGAATTTGACTTAGAAGCCTCTCGCACAGAGGATACATCAAACACTGCCAAAAGAAAACAGAAGAAGAAAACGGGAAAGCTCTCCATGGACGAGGCAGGTGAGAGTCGGGAGACTAAAAGATGCACGCATTGTCAAGTGACGAAGACCCCTCAGTGGAGGGAAGGGCCACTAGGACCGAAGACCCTTTGCAATGCATGTGGGGTTCGGTACAGGTCTGGCCGCCTCCTCCCGGAGTACCGCCCTGCAGCAAGCCCTACATTCGTCGCTTCAGTGCATTCAAACTCGCACAAGAAGGTCATCGAGCTGAGAAGCAAGTCTTGCCAGGGGGCGAGTATGGGGATTTTATCGTCGGCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

297

Amino Acids

33.05

Weight (kDa)

8.05

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	218 - 252	2.4e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	617
AatII	GACGTC	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	617
AciI	CCGC	8 cut(s)	15, 75, 191, 194, 296, 328, 751, 769
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	4 cut(s)	225, 398, 508, 533
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	4 cut(s)	463, 481, 740, 767
AfeI	AGCGCT	1 cut(s)	112
AfiI	CCNNNNNNNGG	4 cut(s)	80, 81, 684, 760
AgsI	TTSAA	4 cut(s)	91, 362, 404, 810
AjnI	CCWGG	2 cut(s)	220, 852
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	31, 424, 610, 835
AluI	AGCT	4 cut(s)	31, 424, 610, 835
Alw26I	GTCTC	2 cut(s)	16, 635
Aor51HI	AGCGCT	1 cut(s)	112
AoxI	GGCC	5 cut(s)	84, 355, 695, 748, 882
ApeKI	GCWGC	3 cut(s)	330, 380, 776
ApoI	RAATTY	4 cut(s)	225, 398, 508, 533
AspLEI	GCGC	2 cut(s)	113, 411
AspS9I	GGNCC	5 cut(s)	84, 218, 695, 704, 883
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	1 cut(s)	641
AvaII	GGWCC	2 cut(s)	218, 704
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	3 cut(s)	138, 680, 716
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	3 cut(s)	342, 367, 788
BccI	CCATC	4 cut(s)	56, 74, 332, 347
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	2 cut(s)	222, 854
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	2 cut(s)	16, 635
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	617
BfuI	GTATCC	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	6 cut(s)	191, 194, 331, 381, 751, 777
BlsI	GCNGC	6 cut(s)	192, 195, 332, 382, 752, 778
Bme1390I	CCNGG	3 cut(s)	222, 761, 854
Bme18I	GGWCC	2 cut(s)	218, 704
BmgT120I	GGNCC	5 cut(s)	84, 218, 695, 704, 883
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	3 cut(s)	222, 761, 854
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	3 cut(s)	111, 514, 641
BmuI	ACTGGG	1 cut(s)	880
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	3 cut(s)	138, 680, 716
Bpu10I	CCTNAGC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	761
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	2 cut(s)	615, 853
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 81, 684, 760
Bse1I	ACTGG	1 cut(s)	886
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	2 cut(s)	222, 854
BseDI	CCNNGG	2 cut(s)	615, 853
BseGI	GGATG	6 cut(s)	67, 102, 324, 471, 485, 529
BseLI	CCNNNNNNNGG	4 cut(s)	80, 81, 684, 760
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	4 cut(s)	121, 490, 695, 827
BseNI	ACTGG	1 cut(s)	886
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	3 cut(s)	342, 367, 788
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	5 cut(s)	86, 357, 697, 750, 884
BsiEI	CGRYCG	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	4 cut(s)	80, 81, 684, 760
BsmAI	GTCTC	2 cut(s)	16, 635
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	5 cut(s)	86, 357, 697, 750, 884
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	8 cut(s)	15, 75, 191, 194, 296, 328, 751, 769
BspANI	GGCC	5 cut(s)	86, 357, 697, 750, 884
BspCNI	CTCAG	4 cut(s)	120, 489, 694, 828
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	2 cut(s)	615, 853
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	222, 854
Bst4CI	ACNGT	2 cut(s)	146, 468
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	849
BstC8I	GCNNGC	6 cut(s)	75, 422, 437, 441, 656, 781
BstDEI	CTNAG	5 cut(s)	107, 476, 541, 681, 836
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	6 cut(s)	67, 102, 324, 471, 485, 529
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 411
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	2 cut(s)	16, 635
BstMBI	GATC	1 cut(s)	205
BstMCI	CGRYCG	1 cut(s)	296
BstNI	CCWGG	2 cut(s)	222, 854
BstNSI	RCATGY	1 cut(s)	729
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	220, 759, 852
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	3 cut(s)	342, 367, 788
BstV2I	GAAGAC	3 cut(s)	138, 680, 716
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	5 cut(s)	86, 357, 697, 750, 884
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	6 cut(s)	67, 102, 324, 471, 485, 529
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	4 cut(s)	151, 573, 689, 807
BveI	ACCTGC	1 cut(s)	617
Cac8I	GCNNGC	6 cut(s)	75, 422, 437, 441, 656, 781
CfoI	GCGC	2 cut(s)	113, 411
Cfr13I	GGNCC	5 cut(s)	84, 218, 695, 704, 883
Csp6I	GTAC	4 cut(s)	462, 480, 739, 766
CspCI	CAANNNNNGTGG	2 cut(s)	709, 744
CviAII	CATG	3 cut(s)	58, 616, 726
CviQI	GTAC	4 cut(s)	462, 480, 739, 766
DdeI	CTNAG	5 cut(s)	107, 476, 541, 681, 836
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	218, 704
Eco47III	AGCGCT	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	220, 852
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	3 cut(s)	61, 619, 729
FalI	AAGNNNNNCTT	6 cut(s)	298, 330, 342, 374, 832, 864
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	3 cut(s)	57, 615, 725
FauI	CCCGC	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	282
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	6 cut(s)	191, 194, 331, 381, 751, 777
FokI	GGATG	6 cut(s)	74, 89, 311, 458, 472, 536
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	6 cut(s)	191, 194, 331, 381, 751, 777
FspBI	CTAG	1 cut(s)	701
GlaI	GCGC	2 cut(s)	112, 410
GluI	GCNGC	6 cut(s)	191, 194, 331, 381, 751, 777
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	5 cut(s)	86, 357, 697, 750, 884
HapII	CCGG	1 cut(s)	761
HhaI	GCGC	2 cut(s)	113, 411
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	61, 619, 729
Hin6I	GCGC	2 cut(s)	111, 409
HinP1I	GCGC	2 cut(s)	111, 409
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	3 cut(s)	116, 429, 638
Hpy8I	GTNNAC	1 cut(s)	464
Hpy99I	CGWCG	3 cut(s)	26, 797, 883
HpyAV	CCTTC	4 cut(s)	97, 353, 686, 817
HpyCH4III	ACNGT	2 cut(s)	146, 468
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	443, 654, 720, 725, 776, 805
HpyF3I	CTNAG	5 cut(s)	107, 476, 541, 681, 836
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	3 cut(s)	61, 619, 729
HspAI	GCGC	2 cut(s)	111, 409
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	205
Lsp1109I	GCAGC	3 cut(s)	342, 367, 788
LweI	GCATC	3 cut(s)	111, 514, 641
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	53, 310, 667
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	6 cut(s)	143, 164, 604, 607, 685, 721
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	9 cut(s)	91, 225, 299, 386, 398, 450, 490, 508, 533
MlyI	GAGTC	1 cut(s)	643
Mph1103I	ATGCAT	1 cut(s)	727
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	3 cut(s)	222, 761, 854
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	2 cut(s)	222, 854
NciI	CCSGG	1 cut(s)	761
NcoI	CCATGG	1 cut(s)	615
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	61, 619, 729
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	53, 667
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	729
PaqCI	CACCTGC	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 436
PctI	GAATGC	1 cut(s)	805
PflFI	GACNNNGTC	1 cut(s)	146
PfoI	TCCNGGA	2 cut(s)	220, 759
PkrI	GCNGC	6 cut(s)	192, 195, 332, 382, 752, 778
PleI	GAGTC	1 cut(s)	642
PpsI	GAGTC	1 cut(s)	642
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	220, 852
PspGI	CCWGG	2 cut(s)	220, 852
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	5 cut(s)	84, 218, 695, 704, 883
PstI	CTGCAG	1 cut(s)	778
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	4 cut(s)	463, 481, 740, 767
RsaNI	GTAC	4 cut(s)	462, 480, 739, 766
SatI	GCNGC	6 cut(s)	191, 194, 331, 381, 751, 777
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	5 cut(s)	84, 218, 695, 704, 883
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	3 cut(s)	222, 761, 854
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	111, 514, 641
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	2 cut(s)	218, 704
Sse9I	AATT	9 cut(s)	91, 225, 299, 386, 398, 450, 490, 508, 533
SsiI	CCGC	8 cut(s)	15, 75, 191, 194, 296, 328, 751, 769
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	3 cut(s)	220, 759, 852
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	2 cut(s)	146, 468
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	117, 150, 831
TaqII	GACCGA	1 cut(s)	721
TasI	AATT	9 cut(s)	91, 225, 299, 386, 398, 450, 490, 508, 533
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	3 cut(s)	193, 196, 753
TscAI	CASTG	4 cut(s)	151, 580, 689, 807
TseFI	GTSAC	2 cut(s)	53, 667
TseI	GCWGC	3 cut(s)	330, 380, 776
Tsp45I	GTSAC	2 cut(s)	53, 667
TspDTI	ATGAA	1 cut(s)	460
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	151, 580, 689, 807
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	218, 704
XapI	RAATTY	4 cut(s)	225, 398, 508, 533
XceI	RCATGY	1 cut(s)	729
XspI	CTAG	1 cut(s)	701
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.