Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Reverse (-)

7176783 .. 7180679

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACGGCGGTCTCTGCTGACGTCACCAAGCTAACGAAGCGTGAGAATATTAGTGCCATGGCTAGTTCTATGCCCACTGATGATAATTTCAATATCGAGAGCTTCCTCCCTGACGAACTCAAGGCCCTTGATTTCCCCATGGAAGACATTGAAGAGTGTGTTGAAGACGAAGATTGGTATGCACAATTCCAAAACCTCGAACCGCCTTCCTTTGAAGATTTGTTTTGTCCAAGAGTTTTGGATGGTAATGACGACATGAAACCTAAGAACCTCTCCACTTCGTATGGACAAACTTCTCAGCGAAATCAATTACCAAGGACTGCTGCTAAAACTACCCGAGGCATAAGCAGTATTCACAGCGAGGACCTTGAAAGTATTGGCTCTTGTGCTGCTCAATTTGAGCCCAAGTTCGAAAAGCGTACCCGAAGCAAGCTTTCACGAAGCAAGCGTTCCAGCCCTGCTATTTTCAATACTCAGTTCTTCCCCAGCACCTCATCCAACTCCTCCGCCTCTGAAAATTTATATCATTGGGATGCTTCTGAATCAGACTTAGAAGGCTCTCTGACTGAGGAGATGTCGAATGCTGCCAAAAGAAAACAAAAGAAGAAAAGGAATCTATCGCAGCTCTCAAGTGCAGAGATGAGAAAGCTCTCCACGGAGGAACCAGGTGAGAGTCGGGAGACTAAAAGATGCATGCACTGTGCAGTGACGAAGACCCCTCAGTGGAGGGAAGGGCCACTAGGACCAAAGACCCTCTGCAATGCGTGCGGGGTTCGTTATAGGTCTGGCCGTCTCTTTCCGGAGTACCGCCCTGCTGCAAGTCCTACATTCGTTGCGTCAGTCCATTCCAACTCCCACAAGAAGGTTATAGAGTTGAGAAACAAGGGTTGCCAGGGGGCTACTATGGGAATTTTATCCTCGGCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

310

Amino Acids

34.52

Weight (kDa)

6.96

Isoelectric Point (pI)

67.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	799
AciI	CCGC	5 cut(s)	8, 203, 507, 768, 808
AcoI	YGGCCR	1 cut(s)	787
AcsI	RAATTY	2 cut(s)	517, 909
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	421, 806
AfiI	CCNNNNNNNGG	2 cut(s)	723, 862
AgsI	TTSAA	6 cut(s)	91, 152, 164, 215, 371, 469
AjnI	CCWGG	2 cut(s)	664, 891
AluBI	AGCT	5 cut(s)	31, 102, 433, 625, 649
AluI	AGCT	5 cut(s)	31, 102, 433, 625, 649
Alw26I	GTCTC	3 cut(s)	16, 674, 797
Ama87I	CYCGRG	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	4 cut(s)	123, 734, 787, 921
ApeKI	GCWGC	5 cut(s)	323, 389, 584, 622, 815
ApoI	RAATTY	2 cut(s)	517, 909
AspS9I	GGNCC	5 cut(s)	124, 364, 734, 743, 922
AsuHPI	GGTGA	2 cut(s)	16, 680
AsuII	TTCGAA	1 cut(s)	411
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	364, 743
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	3 cut(s)	150, 171, 719
BbvI	GCAGC	5 cut(s)	310, 376, 571, 634, 802
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	2 cut(s)	21, 774
BciT130I	CCWGG	2 cut(s)	666, 893
BcoDI	GTCTC	3 cut(s)	16, 674, 797
BfaI	CTAG	2 cut(s)	63, 740
BisI	GCNGC	5 cut(s)	324, 390, 585, 623, 816
BlsI	GCNGC	5 cut(s)	325, 391, 586, 624, 817
Bme1390I	CCNGG	2 cut(s)	666, 893
Bme18I	GGWCC	2 cut(s)	364, 743
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	5 cut(s)	124, 364, 734, 743, 922
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	2 cut(s)	666, 893
BmrI	ACTGGG	1 cut(s)	919
BmsI	GCATC	2 cut(s)	523, 680
BmuI	ACTGGG	1 cut(s)	919
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	3 cut(s)	150, 171, 719
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	104, 613
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	7 cut(s)	57, 138, 314, 337, 654, 892, 918
BsaWI	WCCGGW	1 cut(s)	799
Bsc4I	CCNNNNNNNGG	2 cut(s)	723, 862
Bse1I	ACTGG	1 cut(s)	925
Bse3DI	GCAATG	1 cut(s)	766
BseAI	TCCGGA	1 cut(s)	799
BseBI	CCWGG	2 cut(s)	666, 893
BseDI	CCNNGG	7 cut(s)	57, 138, 314, 337, 654, 892, 918
BseGI	GGATG	3 cut(s)	247, 494, 538
BseLI	CCNNNNNNNGG	2 cut(s)	723, 862
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	4 cut(s)	311, 488, 558, 734
BseNI	ACTGG	1 cut(s)	925
BseRI	GAGGAG	2 cut(s)	493, 584
BseXI	GCAGC	5 cut(s)	310, 376, 571, 634, 802
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	2 cut(s)	654, 723
BshFI	GGCC	4 cut(s)	125, 736, 789, 923
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	800
BslI	CCNNNNNNNGG	2 cut(s)	723, 862
BsmAI	GTCTC	3 cut(s)	16, 674, 797
BsmBI	CGTCTC	1 cut(s)	797
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	4 cut(s)	125, 736, 789, 923
Bso31I	GGTCTC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp13I	TCCGGA	1 cut(s)	799
Bsp19I	CCATGG	2 cut(s)	57, 138
BspACI	CCGC	5 cut(s)	8, 203, 507, 768, 808
BspANI	GGCC	4 cut(s)	125, 736, 789, 923
BspCNI	CTCAG	4 cut(s)	310, 487, 559, 733
BspEI	TCCGGA	1 cut(s)	799
BspLI	GGNNCC	1 cut(s)	663
BspT104I	TTCGAA	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	766
BsrI	ACTGG	1 cut(s)	925
BssECI	CCNNGG	7 cut(s)	57, 138, 314, 337, 654, 892, 918
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	3 cut(s)	57, 138, 314
Bst2UI	CCWGG	2 cut(s)	666, 893
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	765
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	4 cut(s)	431, 446, 695, 766
BstDEI	CTNAG	6 cut(s)	264, 297, 474, 550, 567, 720
BstDSI	CCRYGG	3 cut(s)	57, 138, 654
BstF5I	GGATG	3 cut(s)	247, 494, 538
BstMAI	GTCTC	3 cut(s)	16, 674, 797
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 37, 765
BstNI	CCWGG	2 cut(s)	666, 893
BstNSI	RCATGY	1 cut(s)	697
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	664, 891
BstV1I	GCAGC	5 cut(s)	310, 376, 571, 634, 802
BstV2I	GAAGAC	3 cut(s)	150, 171, 719
BsuRI	GGCC	4 cut(s)	125, 736, 789, 923
BtgI	CCRYGG	3 cut(s)	57, 138, 654
BtsCI	GGATG	3 cut(s)	247, 494, 538
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	4 cut(s)	75, 697, 711, 728
Cac8I	GCNNGC	4 cut(s)	431, 446, 695, 766
Cfr13I	GGNCC	5 cut(s)	124, 364, 734, 743, 922
CseI	GACGC	1 cut(s)	825
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	420, 805
CviAII	CATG	4 cut(s)	58, 139, 256, 694
CviQI	GTAC	2 cut(s)	420, 805
DdeI	CTNAG	6 cut(s)	264, 297, 474, 550, 567, 720
EaeI	YGGCCR	1 cut(s)	787
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	496
Eco130I	CCWWGG	3 cut(s)	57, 138, 314
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	364, 743
Eco88I	CYCGRG	1 cut(s)	336
EcoO109I	RGGNCCY	2 cut(s)	124, 364
EcoRII	CCWGG	2 cut(s)	664, 891
EcoT14I	CCWWGG	3 cut(s)	57, 138, 314
EcoT22I	ATGCAT	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	3 cut(s)	57, 138, 314
Esp3I	CGTCTC	1 cut(s)	797
FaeI	CATG	4 cut(s)	61, 142, 259, 697
FatI	CATG	4 cut(s)	57, 138, 255, 693
FauI	CCCGC	1 cut(s)	761
Fnu4HI	GCNGC	5 cut(s)	324, 390, 585, 623, 816
FokI	GGATG	3 cut(s)	254, 481, 545
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	5 cut(s)	324, 390, 585, 623, 816
FspBI	CTAG	2 cut(s)	63, 740
GluI	GCNGC	5 cut(s)	324, 390, 585, 623, 816
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	125, 736, 789, 923
HapII	CCGG	1 cut(s)	800
HgaI	GACGC	1 cut(s)	825
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	61, 142, 259, 697
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	3 cut(s)	542, 613, 673
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	2 cut(s)	16, 680
Hpy188I	TCNGA	4 cut(s)	514, 541, 547, 564
Hpy188III	TCNNGA	4 cut(s)	97, 438, 677, 800
HpyAV	CCTTC	4 cut(s)	216, 548, 725, 856
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	7 cut(s)	182, 635, 693, 697, 704, 759, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 37, 765
HpyF3I	CTNAG	6 cut(s)	264, 297, 474, 550, 567, 720
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	61, 142, 259, 697
Kpn2I	TCCGGA	1 cut(s)	799
Lsp1109I	GCAGC	5 cut(s)	310, 376, 571, 634, 802
LweI	GCATC	2 cut(s)	523, 680
MabI	ACCWGGT	1 cut(s)	664
MaeI	CTAG	2 cut(s)	63, 740
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	22, 706
MboII	GAAGA	8 cut(s)	155, 164, 176, 182, 227, 472, 616, 724
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	6 cut(s)	85, 185, 308, 395, 517, 909
MlyI	GAGTC	1 cut(s)	682
MmeI	TCCRAC	2 cut(s)	522, 873
Mph1103I	ATGCAT	1 cut(s)	695
MroI	TCCGGA	1 cut(s)	799
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	2 cut(s)	666, 893
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	666, 893
MwoI	GCNNNNNNNGC	3 cut(s)	14, 37, 765
NcoI	CCATGG	2 cut(s)	57, 138
NlaIII	CATG	4 cut(s)	61, 142, 259, 697
NlaIV	GGNNCC	1 cut(s)	663
NmeAIII	GCCGAG	1 cut(s)	899
NmuCI	GTSAC	2 cut(s)	22, 706
NsiI	ATGCAT	1 cut(s)	695
NspI	RCATGY	1 cut(s)	697
NspV	TTCGAA	1 cut(s)	411
PaeI	GCATGC	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	542, 613
PkrI	GCNGC	5 cut(s)	325, 391, 586, 624, 817
PleI	GAGTC	1 cut(s)	681
PpsI	GAGTC	1 cut(s)	681
PpuMI	RGGWCCY	1 cut(s)	364
PshAI	GACNNNNGTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	664, 891
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	664, 891
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	5 cut(s)	124, 364, 734, 743, 922
PspPPI	RGGWCCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	421, 806
RsaNI	GTAC	2 cut(s)	420, 805
RseI	CAYNNNNRTG	1 cut(s)	531
SatI	GCNGC	5 cut(s)	324, 390, 585, 623, 816
Sau96I	GGNCC	5 cut(s)	124, 364, 734, 743, 922
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	2 cut(s)	666, 893
SduI	GDGCHC	1 cut(s)	405
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	523, 680
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	2 cut(s)	364, 743
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	119, 628
SmoI	CTYRAG	2 cut(s)	119, 628
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	6 cut(s)	85, 185, 308, 395, 517, 909
SsiI	CCGC	5 cut(s)	8, 203, 507, 768, 808
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	2 cut(s)	63, 740
StyD4I	CCNGG	2 cut(s)	664, 891
StyI	CCWWGG	3 cut(s)	57, 138, 314
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	4 cut(s)	96, 198, 411, 578
TasI	AATT	6 cut(s)	85, 185, 308, 395, 517, 909
TfiI	GAWTC	2 cut(s)	542, 613
TscAI	CASTG	4 cut(s)	82, 704, 711, 728
TseFI	GTSAC	2 cut(s)	22, 706
TseI	GCWGC	5 cut(s)	323, 389, 584, 622, 815
Tsp45I	GTSAC	2 cut(s)	22, 706
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	4 cut(s)	82, 704, 711, 728
VpaK11BI	GGWCC	2 cut(s)	364, 743
XapI	RAATTY	2 cut(s)	517, 909
XceI	RCATGY	1 cut(s)	697
XspI	CTAG	2 cut(s)	63, 740
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.