Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008408

Physical Location & Seq

Genomic Coordinates Forward (+)

65203181 .. 65207427

Gene Structure 4247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG410800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATGCTTTGCCTTTGGATGATAACATTAATCAACTCTTGGAGCACTTCTACGATGACGATACCATTAAGGCTCTTGATTTCCCCATGGAAGACATTGACGCCACAGACGAAGATTGGAAGACTCAACTCCAAGGCCTTGAGCCATACTATGAATCAAATTTCCAGTACCTTTCCACTTCGTATGAAGGTACTTCCGGTGTTACTGCTATAACCAGCGGCGGCAGAAGCAGTCTCCAAAGCAATGATTGTTTTGATCGAAAGCACATGCACCTGATCCCAATCCATAGTCCAGTGTCTGTCCTTAAAAGCCAGAGTGAAAGCCAAAGTTCTGGTTCTGCTCAACACCTGAGAACCTTGGAGCCCAATTTCATCAACATCAGAGCCTCTGAGCCCAGTTTCGTCAACCCGGTGAAGAAGAAGCGTACACAATGCAGGCGTGCACGCCCTACTAATTTCAGTAACCGGTTCACGTTCCCTTGTGCCTCGTCCAATTCCTCTGTCTCCGACAATTTTTATCGTTTTGAAACCTTTCTGACTGAGGAGATGATGAACCCTGACAAGAGAAAACAGAAGAAAAATAATCCCTCTTTGCAGGAAACAGGTGAGATTAGTGAGACCAAAAGATCCATGGAACCAGGCGAGAGTCGTGAGACTAAAAGATGCACGCATTGTGCGGTTACGAAGACCCCACAATGGAGGGAAGGACCTCTAGGGCCGAAGACCCTCTGCAATGCATGTGGGGTTCGTTACAGGTCCGGCCGCCTCTATCCCGAGTACCGTCCTGCAGCAAGTCCTACATTCGTTCCAGCGGTGCATTCAAACTCCCACAAGAAGGTTATAGAGTTGAGAAATAAGGGTTGCCAAGGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

291

Amino Acids

32.99

Weight (kDa)

8.07

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	222 - 255	8.1e-16	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08000 AT1G08000 AT1G08010 AT1G08010 AT1G08010 AT2G28340
fragaria_vesca	FvH4_3g31980 FvH4_3g31980 FvH4_3g31980
malus_domestica	MD03G1119800.v1.1 MD11G1137400.v1.1
prunus_persica	Prupe.6G102900_v2.0.a1 Prupe.6G102900_v2.0.a1
pyrus_communis	pycom11g11380
rosa_chinensis	RchiOBHm_Chr5g0058731
rosa_laevigata	RLG00000035243
rosa_multiflora	Rmu_sc0000367.1_g000223
rosa_roxburghii	Rroxscaffold_1G00021680
rosa_samantha	Rh5AG383400 Rh5BG395300 Rh5CG419100 Rh5DG410800
rosa_wichuraiana	Rw5G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	219, 222, 677, 763, 812
AclWI	GGATC	2 cut(s)	271, 621
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	170, 193, 427, 779
AfiI	CCNNNNNNNGG	2 cut(s)	696, 835
AgeI	ACCGGT	1 cut(s)	465
AgsI	TTSAA	2 cut(s)	527, 822
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	1 cut(s)	873
AluI	AGCT	1 cut(s)	873
Alw21I	GWGCWC	2 cut(s)	48, 445
Alw26I	GTCTC	4 cut(s)	239, 508, 611, 647
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	271, 621
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	3 cut(s)	136, 716, 760
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	160
AseI	ATTAAT	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	707, 716, 756
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	424, 617
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	707, 756
BaeGI	GKGCMC	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	366, 396
BbsI	GAAGAC	4 cut(s)	99, 128, 692, 728
Bbv12I	GWGCWC	2 cut(s)	48, 445
BbvI	GCAGC	1 cut(s)	800
BciT130I	CCWGG	1 cut(s)	639
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	4 cut(s)	239, 508, 611, 647
BfaI	CTAG	2 cut(s)	713, 874
BfmI	CTRYAG	1 cut(s)	786
BisI	GCNGC	4 cut(s)	220, 223, 763, 789
BlsI	GCNGC	4 cut(s)	221, 224, 764, 790
Bme1390I	CCNGG	2 cut(s)	410, 639
Bme18I	GGWCC	2 cut(s)	707, 756
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	3 cut(s)	707, 716, 756
BmiI	GGNNCC	2 cut(s)	363, 636
BmrFI	CCNGG	2 cut(s)	410, 639
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	4 cut(s)	99, 128, 692, 728
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	410
BsaBI	GATNNNNATC	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	5 cut(s)	87, 133, 357, 630, 865
BsaWI	WCCGGW	2 cut(s)	197, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	696, 835
Bse118I	RCCGGY	1 cut(s)	465
Bse1I	ACTGG	3 cut(s)	166, 293, 396
Bse3DI	GCAATG	2 cut(s)	250, 739
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	5 cut(s)	87, 133, 357, 630, 865
BseGI	GGATG	2 cut(s)	10, 25
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	696, 835
BseMI	GCAATG	2 cut(s)	250, 739
BseMII	CTCAG	3 cut(s)	341, 381, 531
BseNI	ACTGG	3 cut(s)	166, 293, 396
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	445
BseX3I	CGGCCG	1 cut(s)	760
BseXI	GCAGC	1 cut(s)	800
Bsh1285I	CGRYCG	1 cut(s)	763
BshFI	GGCC	3 cut(s)	138, 718, 762
BshTI	ACCGGT	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	763
BsiHKAI	GWGCWC	2 cut(s)	48, 445
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	4 cut(s)	198, 410, 466, 759
BslI	CCNNNNNNNGG	2 cut(s)	696, 835
BsmAI	GTCTC	4 cut(s)	239, 508, 611, 647
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	3 cut(s)	138, 718, 762
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	4 cut(s)	48, 366, 396, 445
Bsp143I	GATC	3 cut(s)	256, 276, 626
Bsp19I	CCATGG	2 cut(s)	87, 630
BspACI	CCGC	5 cut(s)	219, 222, 677, 763, 812
BspANI	GGCC	3 cut(s)	138, 718, 762
BspCNI	CTCAG	3 cut(s)	342, 382, 532
BspLI	GGNNCC	2 cut(s)	363, 636
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	271, 621
BspTNI	GGTCTC	1 cut(s)	611
BsrDI	GCAATG	2 cut(s)	250, 739
BsrFI	RCCGGY	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	166, 293, 396
BssAI	RCCGGY	1 cut(s)	465
BssECI	CCNNGG	5 cut(s)	87, 133, 357, 630, 865
BssMI	GATC	3 cut(s)	256, 276, 626
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	5 cut(s)	87, 133, 357, 630, 865
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	1 cut(s)	782
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	437, 441, 445, 668
BstDEI	CTNAG	3 cut(s)	350, 390, 540
BstDSI	CCRYGG	2 cut(s)	87, 630
BstF5I	GGATG	2 cut(s)	10, 25
BstKTI	GATC	3 cut(s)	259, 279, 629
BstMAI	GTCTC	4 cut(s)	239, 508, 611, 647
BstMBI	GATC	3 cut(s)	256, 276, 626
BstMCI	CGRYCG	1 cut(s)	763
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 870
BstNI	CCWGG	1 cut(s)	639
BstNSI	RCATGY	2 cut(s)	271, 741
BstSCI	CCNGG	2 cut(s)	408, 637
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	800
BstV2I	GAAGAC	4 cut(s)	99, 128, 692, 728
BstX2I	RGATCY	1 cut(s)	626
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	626
BstZI	CGGCCG	1 cut(s)	760
BsuRI	GGCC	3 cut(s)	138, 718, 762
BtgI	CCRYGG	2 cut(s)	87, 630
BtsCI	GGATG	2 cut(s)	10, 25
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	4 cut(s)	437, 441, 445, 668
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	707, 716, 756
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	169, 192, 426, 778
CspAI	ACCGGT	1 cut(s)	465
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	4 cut(s)	88, 268, 631, 738
CviQI	GTAC	4 cut(s)	169, 192, 426, 778
DdeI	CTNAG	3 cut(s)	350, 390, 540
DpnI	GATC	3 cut(s)	258, 278, 628
DpnII	GATC	3 cut(s)	256, 276, 626
EaeI	YGGCCR	1 cut(s)	760
EagI	CGGCCG	1 cut(s)	760
EclXI	CGGCCG	1 cut(s)	760
Eco130I	CCWWGG	5 cut(s)	87, 133, 357, 630, 865
Eco147I	AGGCCT	1 cut(s)	138
Eco24I	GRGCYC	2 cut(s)	366, 396
Eco31I	GGTCTC	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	707, 756
Eco52I	CGGCCG	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	773
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	637
EcoT14I	CCWWGG	5 cut(s)	87, 133, 357, 630, 865
EcoT22I	ATGCAT	1 cut(s)	739
EcoT38I	GRGCYC	2 cut(s)	366, 396
ErhI	CCWWGG	5 cut(s)	87, 133, 357, 630, 865
FaeI	CATG	4 cut(s)	91, 271, 634, 741
FatI	CATG	4 cut(s)	87, 267, 630, 737
Fnu4HI	GCNGC	4 cut(s)	220, 223, 763, 789
FokI	GGATG	2 cut(s)	17, 32
FriOI	GRGCYC	2 cut(s)	366, 396
Fsp4HI	GCNGC	4 cut(s)	220, 223, 763, 789
FspBI	CTAG	2 cut(s)	713, 874
GluI	GCNGC	4 cut(s)	220, 223, 763, 789
HaeIII	GGCC	3 cut(s)	138, 718, 762
HapII	CCGG	4 cut(s)	198, 410, 466, 759
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	91, 271, 634, 741
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	3 cut(s)	124, 155, 646
HpaII	CCGG	4 cut(s)	198, 410, 466, 759
HphI	GGTGA	2 cut(s)	424, 617
Hpy166II	GTNNAC	4 cut(s)	406, 428, 443, 471
Hpy188I	TCNGA	4 cut(s)	383, 391, 508, 537
Hpy188III	TCNNGA	3 cut(s)	77, 650, 773
Hpy8I	GTNNAC	4 cut(s)	406, 428, 443, 471
HpyAV	CCTTC	3 cut(s)	182, 698, 829
HpyCH4III	ACNGT	1 cut(s)	782
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	9 cut(s)	271, 435, 443, 595, 666, 732, 737, 788, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 870
HpyF3I	CTNAG	3 cut(s)	350, 390, 540
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	91, 271, 634, 741
Kzo9I	GATC	3 cut(s)	256, 276, 626
LmnI	GCTCC	3 cut(s)	43, 361, 870
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	2 cut(s)	713, 874
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	4 cut(s)	202, 461, 679, 749
MalI	GATC	3 cut(s)	258, 278, 628
MboI	GATC	3 cut(s)	256, 276, 626
MboII	GAAGA	8 cut(s)	104, 125, 133, 427, 430, 586, 697, 733
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	4 cut(s)	48, 366, 396, 445
MluCI	AATT	5 cut(s)	160, 367, 454, 493, 511
MlyI	GAGTC	2 cut(s)	118, 655
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	9 cut(s)	397, 496, 508, 535, 598, 693, 720, 737, 776
Mph1103I	ATGCAT	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	3 cut(s)	30, 69, 306
MspA1I	CMGCKG	2 cut(s)	219, 812
MspI	CCGG	4 cut(s)	198, 410, 466, 759
MspR9I	CCNGG	2 cut(s)	410, 639
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	228, 870
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	2 cut(s)	87, 630
NdeII	GATC	3 cut(s)	256, 276, 626
NlaIII	CATG	4 cut(s)	91, 271, 634, 741
NlaIV	GGNNCC	2 cut(s)	363, 636
NsiI	ATGCAT	1 cut(s)	739
NspI	RCATGY	2 cut(s)	271, 741
PceI	AGGCCT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	221, 224, 764, 790
PleI	GAGTC	2 cut(s)	118, 654
PpsI	GAGTC	2 cut(s)	118, 654
PpuMI	RGGWCCY	1 cut(s)	707
PshBI	ATTAAT	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	707
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	363, 636
PspPI	GGNCC	3 cut(s)	707, 716, 756
PspPPI	RGGWCCY	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	626
RsaI	GTAC	4 cut(s)	170, 193, 427, 779
RsaNI	GTAC	4 cut(s)	169, 192, 426, 778
SaqAI	TTAA	3 cut(s)	30, 69, 306
SatI	GCNGC	4 cut(s)	220, 223, 763, 789
Sau3AI	GATC	3 cut(s)	256, 276, 626
Sau96I	GGNCC	3 cut(s)	707, 716, 756
SchI	GAGTC	2 cut(s)	118, 655
ScrFI	CCNGG	2 cut(s)	410, 639
SduI	GDGCHC	4 cut(s)	48, 366, 396, 445
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	2 cut(s)	707, 756
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	5 cut(s)	160, 367, 454, 493, 511
SseBI	AGGCCT	1 cut(s)	138
SsiI	CCGC	5 cut(s)	219, 222, 677, 763, 812
SspMI	CTAG	2 cut(s)	713, 874
StuI	AGGCCT	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	408, 637
StyI	CCWWGG	5 cut(s)	87, 133, 357, 630, 865
TaaI	ACNGT	1 cut(s)	782
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	1 cut(s)	259
TasI	AATT	5 cut(s)	160, 367, 454, 493, 511
TauI	GCSGC	3 cut(s)	222, 225, 765
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	30, 69, 306
Tru9I	TTAA	3 cut(s)	30, 69, 306
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	1 cut(s)	788
TspDTI	ATGAA	4 cut(s)	168, 201, 361, 566
TspRI	CASTG	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	441
VpaK11BI	GGWCC	2 cut(s)	707, 756
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	2 cut(s)	271, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	2 cut(s)	713, 874
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.