Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012540

Physical Location & Seq

Genomic Coordinates Forward (+)

2607877 .. 2609971

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAAACGATCCGTTAGACCTCTCTTCAGTGCTCTTCTCTTCGCCTTCTTCGCCGCTACACTCATCTGCAGAGTGGCGATTCGTCGGAGCAGCTTCTCCTTCGCTTCCGCCATCGCTGAGCTTGGTTCCTCCGGTCTCATGACTGAAGATATTGTATTCAACGAGACATTGCTCGAGTTCGCCGCCATTGATCCCGGAGAACCTAACTTCAAACAGGAAGTCGATTTGATTTCCGATTACGACCACACTCGGAGAAGCCACCGTCGACATTTCAGCTCCATGTCAATAAGACCAAGCGAGCAACAACGCCGTGTGAGTAGAGACATTGCTTCCTCCTCCAAGTTTCCGGTAACGCTTCGTTCTTCTCAGGCTTATCGTTACTGGTCAGAGTTCAAAAGAAATTTACGGCTTTGGGCTCGTAGAAGAGCTTATGAACCTAATATCATGTTAGATTTGATCAGATTAGTTAAGAATCCGATTGATGTTCACAATGGTGTTGTTTCGATTTCGAGTGAAAGATACTTATCTTGTGCAGTGGTTGGGAATAGTGGTACATTGCTAAATAGTCAATACGGAGATCTCATTGATAAGCATGAGATTGTGATTCGGTTGAACAATGCGAAAACAGAGAGGTTTGAGAAGAAGGTTGGATCGAAAACAAATATATCTTTCATAAATAGTAACATTTTGCATCAATGTGGGAGAAGGGAGAGTTGCTATTGTCATCCTTATGGTGAAACAGTGCCTATTGTGATGTACATTTGCCAACCGATTCATGTTTTGGATTACACTTTGTGTAAACCATCTCATCGAGCTCCTCTGCTTATCACGGATCCGAGGTTCGATGTCATGTGTGCTAGAATCGTGAAGTATTACTCGGTGAAGAAGTTCTTGGAAGAGAAGAAAGCGAAAGGGTTTGTCGATTGGAGTAAAGATCATGAAGGCTCGTTGTTTCACTATTCGTCGGGTATGCAGGCTGTGATGCTTGCAGTGGGGATTTGTGAGAAAGTTAGTGTCTTCGGGTTTGGGAAGTTGAATTCAACCAAGCACCATTACCATACTAATCAGAAAGCAGAGCTGAAGCTTCATGACTATGAAGCAGAGTATAGATTGTATCGAGACCTGGAAAACAGTCCCAGGGCCATTCCATTCTTACCAAAAGAATTCAAGATCCCTTTGGTACAAGTTTACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001665 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0097503 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990743

KEGG Pathways

Metabolic & Signaling

ko00512 ko00533 ko00603 ko00604 ko01100 map00512 map00533 map00603 map00604 map01100

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

398

Amino Acids

45.93

Weight (kDa)

9.39

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	147 - 377	1.2e-36	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08280
fragaria_vesca	FvH4_3g24660 FvH4_3g24660 FvH4_3g24660
malus_domestica	MD03G1142400.v1.1 MD11G1162900.v1.1
prunus_persica	Prupe.6G127500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044221 RchiOBHm_Chr6g0296901
rosa_laevigata	RLG00000011025 RLG00000034256
rosa_multiflora	Rmu_sc0000776.1_g000072
rosa_roxburghii	Rroxscaffold_1G00036810
rosa_rugosa	Rorug05G0212600
rosa_samantha	Rh5AG296700 Rh5BG304200 Rh5CG331200 Rh5DG313000
rosa_wichuraiana	Rw5G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	3 cut(s)	54, 108, 183
AclWI	GGATC	6 cut(s)	3, 185, 658, 827, 840, 1165
AcsI	RAATTY	3 cut(s)	400, 1036, 1163
AcuI	CTGAAG	3 cut(s)	10, 165, 1100
AdeI	CACNNNGTG	1 cut(s)	795
AfaI	GTAC	3 cut(s)	553, 758, 1182
AgsI	TTSAA	7 cut(s)	160, 211, 394, 613, 1036, 1041, 1168
AjnI	CCWGG	2 cut(s)	1122, 1136
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
AleI	CACNNNNGTG	1 cut(s)	492
AloI	GAACNNNNNNTCC	2 cut(s)	824, 856
AluBI	AGCT	7 cut(s)	93, 121, 276, 428, 815, 1078, 1084
AluI	AGCT	7 cut(s)	93, 121, 276, 428, 815, 1078, 1084
Alw21I	GWGCWC	2 cut(s)	34, 817
Alw26I	GTCTC	4 cut(s)	140, 158, 315, 1113
AlwI	GGATC	6 cut(s)	3, 185, 658, 827, 840, 1165
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	1140
ApeKI	GCWGC	1 cut(s)	90
ApoI	RAATTY	3 cut(s)	400, 1036, 1163
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
Asp700I	GAANNNNTTC	1 cut(s)	887
AspS9I	GGNCC	1 cut(s)	1140
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	746, 892
AvaI	CYCGRG	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	832
BanII	GRGCYC	2 cut(s)	418, 817
BbsI	GAAGAC	1 cut(s)	1009
Bbv12I	GWGCWC	2 cut(s)	34, 817
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	2 cut(s)	119, 811
BceAI	ACGGC	2 cut(s)	294, 422
BciT130I	CCWGG	2 cut(s)	1124, 1138
BclI	TGATCA	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	4 cut(s)	140, 158, 315, 1113
BfaI	CTAG	1 cut(s)	858
BfmI	CTRYAG	1 cut(s)	67
BglII	AGATCT	1 cut(s)	577
BisI	GCNGC	3 cut(s)	54, 91, 183
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	3 cut(s)	55, 92, 184
Bme1390I	CCNGG	3 cut(s)	195, 1124, 1138
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	1140
BmiI	GGNNCC	2 cut(s)	127, 834
BmrFI	CCNGG	3 cut(s)	195, 1124, 1138
BmsI	GCATC	2 cut(s)	700, 972
BpiI	GAAGAC	1 cut(s)	1009
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	523
BsaI	GGTCTC	2 cut(s)	140, 1113
BsaJI	CCNNGG	3 cut(s)	836, 1136, 1137
BsaWI	WCCGGW	2 cut(s)	131, 346
Bse1I	ACTGG	1 cut(s)	386
Bse3DI	GCAATG	3 cut(s)	167, 324, 554
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	1124, 1138
BseDI	CCNNGG	3 cut(s)	836, 1136, 1137
BseGI	GGATG	1 cut(s)	724
BseJI	GATNNNNATC	1 cut(s)	523
BseMI	GCAATG	3 cut(s)	167, 324, 554
BseMII	CTCAG	2 cut(s)	108, 380
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	2 cut(s)	325, 807
BseXI	GCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	1 cut(s)	1142
BsiHKAI	GWGCWC	2 cut(s)	34, 817
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	132, 195, 347
BslFI	GGGAC	1 cut(s)	1119
BsmAI	GTCTC	4 cut(s)	140, 158, 315, 1113
BsmFI	GGGAC	1 cut(s)	1119
BsnI	GGCC	1 cut(s)	1142
Bso31I	GGTCTC	2 cut(s)	140, 1113
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	34, 418, 817
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	54, 108, 183
BspANI	GGCC	1 cut(s)	1142
BspCNI	CTCAG	2 cut(s)	109, 379
BspHI	TCATGA	3 cut(s)	138, 937, 1087
BspLI	GGNNCC	2 cut(s)	127, 834
BspMAI	CTGCAG	1 cut(s)	71
BspPI	GGATC	6 cut(s)	3, 185, 658, 827, 840, 1165
BspQI	GCTCTTC	2 cut(s)	39, 418
BspTNI	GGTCTC	2 cut(s)	140, 1113
BsrDI	GCAATG	3 cut(s)	167, 324, 554
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	3 cut(s)	836, 1136, 1137
BssMI	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
Bst2UI	CCWGG	2 cut(s)	1124, 1138
Bst4CI	ACNGT	3 cut(s)	263, 742, 1133
Bst6I	CTCTTC	5 cut(s)	29, 39, 44, 418, 891
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	3 cut(s)	299, 975, 987
BstDEI	CTNAG	2 cut(s)	117, 366
BstF5I	GGATG	1 cut(s)	724
BstKTI	GATC	8 cut(s)	11, 193, 459, 580, 653, 835, 937, 1173
BstMAI	GTCTC	4 cut(s)	140, 158, 315, 1113
BstMBI	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	1124, 1138
BstSCI	CCNGG	3 cut(s)	193, 1122, 1136
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	1009
BstX2I	RGATCY	3 cut(s)	577, 832, 1170
BstYI	RGATCY	3 cut(s)	577, 832, 1170
BsuRI	GGCC	1 cut(s)	1142
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	2 cut(s)	540, 996
BtsIMutI	CAGTG	4 cut(s)	34, 540, 747, 996
Cac8I	GCNNGC	3 cut(s)	299, 975, 987
CciI	TCATGA	3 cut(s)	138, 937, 1087
Cfr13I	GGNCC	1 cut(s)	1140
Csp6I	GTAC	3 cut(s)	552, 757, 1181
CviAII	CATG	8 cut(s)	139, 280, 445, 593, 776, 850, 938, 1088
CviQI	GTAC	3 cut(s)	552, 757, 1181
DdeI	CTNAG	2 cut(s)	117, 366
DpnI	GATC	8 cut(s)	10, 192, 458, 579, 652, 834, 936, 1172
DpnII	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
DraIII	CACNNNGTG	1 cut(s)	795
Eam1104I	CTCTTC	5 cut(s)	29, 39, 44, 418, 891
EarI	CTCTTC	5 cut(s)	29, 39, 44, 418, 891
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	815
Eco24I	GRGCYC	2 cut(s)	418, 817
Eco31I	GGTCTC	2 cut(s)	140, 1113
Eco53kI	GAGCTC	1 cut(s)	815
Eco57I	CTGAAG	3 cut(s)	10, 165, 1100
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	815
EcoRI	GAATTC	2 cut(s)	1036, 1163
EcoRII	CCWGG	2 cut(s)	1122, 1136
EcoT38I	GRGCYC	2 cut(s)	418, 817
FaeI	CATG	8 cut(s)	142, 283, 448, 596, 779, 853, 941, 1091
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FaqI	GGGAC	1 cut(s)	1119
FatI	CATG	8 cut(s)	138, 279, 444, 592, 775, 849, 937, 1087
FbaI	TGATCA	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	54, 91, 183
FokI	GGATG	1 cut(s)	711
FriOI	GRGCYC	2 cut(s)	418, 817
Fsp4HI	GCNGC	3 cut(s)	54, 91, 183
FspBI	CTAG	1 cut(s)	858
GluI	GCNGC	3 cut(s)	54, 91, 183
HaeIII	GGCC	1 cut(s)	1142
HapII	CCGG	3 cut(s)	132, 195, 347
Hin1II	CATG	8 cut(s)	142, 283, 448, 596, 779, 853, 941, 1091
HincII	GTYRAC	1 cut(s)	266
HindII	GTYRAC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	1082
HinfI	GANTC	5 cut(s)	79, 472, 604, 772, 861
HpaII	CCGG	3 cut(s)	132, 195, 347
HphI	GGTGA	2 cut(s)	746, 892
Hpy166II	GTNNAC	4 cut(s)	266, 487, 800, 1189
Hpy188I	TCNGA	8 cut(s)	87, 235, 252, 388, 461, 477, 837, 1068
Hpy188III	TCNNGA	6 cut(s)	139, 865, 938, 1088, 1118, 1168
Hpy8I	GTNNAC	4 cut(s)	266, 487, 800, 1189
Hpy99I	CGWCG	3 cut(s)	87, 267, 967
HpyAV	CCTTC	5 cut(s)	55, 109, 637, 699, 935
HpyCH4III	ACNGT	3 cut(s)	263, 742, 1133
HpyCH4V	TGCA	5 cut(s)	69, 533, 691, 973, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	117, 366
Hsp92II	CATG	8 cut(s)	142, 283, 448, 596, 779, 853, 941, 1091
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
LguI	GCTCTTC	2 cut(s)	39, 418
LmnI	GCTCC	3 cut(s)	87, 281, 820
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	2 cut(s)	700, 972
MaeI	CTAG	1 cut(s)	858
MaeIII	GTNAC	3 cut(s)	349, 377, 680
MalI	GATC	8 cut(s)	10, 192, 458, 579, 652, 834, 936, 1172
MboI	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
MflI	RGATCY	3 cut(s)	577, 832, 1170
MhlI	GDGCHC	3 cut(s)	34, 418, 817
MluCI	AATT	3 cut(s)	400, 1036, 1163
MmeI	TCCRAC	2 cut(s)	65, 628
MnlI	CCTC	7 cut(s)	30, 139, 343, 346, 624, 828, 831
MroXI	GAANNNNTTC	1 cut(s)	887
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	4 cut(s)	492, 696, 729, 1092
MspI	CCGG	3 cut(s)	132, 195, 347
MspR9I	CCNGG	3 cut(s)	195, 1124, 1138
MvaI	CCWGG	2 cut(s)	1124, 1138
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
NlaIII	CATG	8 cut(s)	142, 283, 448, 596, 779, 853, 941, 1091
NlaIV	GGNNCC	2 cut(s)	127, 834
OliI	CACNNNNGTG	1 cut(s)	492
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	3 cut(s)	138, 937, 1087
PasI	CCCWGGG	1 cut(s)	1137
PciSI	GCTCTTC	2 cut(s)	39, 418
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	5 cut(s)	79, 472, 604, 772, 861
PfoI	TCCNGGA	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	55, 92, 184
Psp124BI	GAGCTC	1 cut(s)	817
Psp6I	CCWGG	2 cut(s)	1122, 1136
PspGI	CCWGG	2 cut(s)	1122, 1136
PspN4I	GGNNCC	2 cut(s)	127, 834
PspPI	GGNCC	1 cut(s)	1140
PspXI	VCTCGAGB	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	71
PsuI	RGATCY	3 cut(s)	577, 832, 1170
RsaI	GTAC	3 cut(s)	553, 758, 1182
RsaNI	GTAC	3 cut(s)	552, 757, 1181
RseI	CAYNNNNRTG	4 cut(s)	492, 696, 729, 1092
SacI	GAGCTC	1 cut(s)	817
SalI	GTCGAC	1 cut(s)	264
SapI	GCTCTTC	2 cut(s)	39, 418
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	54, 91, 183
Sau3AI	GATC	8 cut(s)	8, 190, 456, 577, 650, 832, 934, 1170
Sau96I	GGNCC	1 cut(s)	1140
ScrFI	CCNGG	3 cut(s)	195, 1124, 1138
SduI	GDGCHC	3 cut(s)	34, 418, 817
SfaNI	GCATC	2 cut(s)	700, 972
SfcI	CTRYAG	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	4 cut(s)	492, 696, 729, 1092
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	400, 1036, 1163
SsiI	CCGC	3 cut(s)	54, 108, 183
SspMI	CTAG	1 cut(s)	858
SstI	GAGCTC	1 cut(s)	817
StyD4I	CCNGG	3 cut(s)	193, 1122, 1136
TaaI	ACNGT	3 cut(s)	263, 742, 1133
TasI	AATT	3 cut(s)	400, 1036, 1163
TatI	WGTACW	1 cut(s)	756
TauI	GCSGC	2 cut(s)	56, 185
TfiI	GAWTC	5 cut(s)	79, 472, 604, 772, 861
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	4 cut(s)	34, 540, 747, 996
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	7 cut(s)	17, 447, 661, 764, 954, 1076, 1110
TspGWI	ACGGA	2 cut(s)	588, 845
TspRI	CASTG	4 cut(s)	34, 540, 747, 996
XapI	RAATTY	3 cut(s)	400, 1036, 1163
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.