Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012540

Physical Location & Seq

Genomic Coordinates Reverse (-)

21795500 .. 21799386

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0212600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGCTGCTCCGGATCGTCGCAGAGCAAAGAAGACGGAGCTTTGAAAAAGATTCGGAAGCCAAAACCTTGGAAGCATCCCCAGCCACTAACAAAGACTCAGCTCTTGCAGCTGCGTGAAGAGTTTTGGGACACGGCTCCTCACTATGGTGGCAGGAAAGAGATTTGGGATGCTCTTCGAGCTGCTGCTGAGGCAGATCTAAGTCTAGCACAAGCTATTGTTGACAGTGCTGGGGTCATTGTTCAGAGTGCTGATTTGACAATTTGCTATGATGAAAGAGGTGCAAAATACGAACTACCCAAGTATGTTTTGAGTGAGCCAACCAACTTGATTCGAGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001665 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0097503 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990743

KEGG Pathways

Metabolic & Signaling

ko00512 ko00533 ko00603 ko00604 ko01100 map00512 map00533 map00603 map00604 map01100

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

114

Amino Acids

12.71

Weight (kDa)

6.73

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBD	PF16455	16 - 113	6.8e-38	Ubiquitin-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08280
fragaria_vesca	FvH4_3g24660 FvH4_3g24660 FvH4_3g24660
malus_domestica	MD03G1142400.v1.1 MD11G1162900.v1.1
prunus_persica	Prupe.6G127500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044221 RchiOBHm_Chr6g0296901
rosa_laevigata	RLG00000011025 RLG00000034256
rosa_multiflora	Rmu_sc0000776.1_g000072
rosa_roxburghii	Rroxscaffold_1G00036810
rosa_rugosa	Rorug05G0212600
rosa_samantha	Rh5AG296700 Rh5BG304200 Rh5CG331200 Rh5DG313000
rosa_wichuraiana	Rw5G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	11
AclWI	GGATC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	5 cut(s)	41, 103, 112, 182, 215
AluI	AGCT	5 cut(s)	41, 103, 112, 182, 215
AlwI	GGATC	1 cut(s)	22
Aor13HI	TCCGGA	1 cut(s)	11
ApeKI	GCWGC	5 cut(s)	6, 109, 112, 182, 185
BbsI	GAAGAC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	99, 121, 169, 172
BceAI	ACGGC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	206
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
BlsI	GCNGC	5 cut(s)	8, 111, 114, 184, 187
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	2 cut(s)	85, 160
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	76, 175
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	113, 180
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	4 cut(s)	99, 121, 169, 172
BseYI	CCCAGC	2 cut(s)	81, 230
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	14, 196
BspCNI	CTCAG	2 cut(s)	112, 181
BspEI	TCCGGA	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	14, 196
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	114, 180
BstDEI	CTNAG	3 cut(s)	99, 189, 200
BstF5I	GGATG	2 cut(s)	76, 175
BstKTI	GATC	2 cut(s)	17, 199
BstMBI	GATC	2 cut(s)	14, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 109, 179, 191
BstV1I	GCAGC	4 cut(s)	99, 121, 169, 172
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	196
BstXI	CCANNNNNNTGG	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	76, 175
BtsIMutI	CAGTG	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	99, 189, 200
DpnI	GATC	2 cut(s)	16, 198
DpnII	GATC	2 cut(s)	14, 196
Eam1104I	CTCTTC	2 cut(s)	114, 180
EarI	CTCTTC	2 cut(s)	114, 180
Eco130I	CCWWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaiI	YATR	3 cut(s)	147, 270, 306
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
FokI	GGATG	2 cut(s)	63, 182
Fsp4HI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
GsaI	CCCAGC	2 cut(s)	85, 234
HapII	CCGG	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	52, 97, 331
HpaII	CCGG	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	57, 246
Hpy188III	TCNNGA	2 cut(s)	12, 335
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	109, 284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 109, 179, 191
HpyF3I	CTNAG	3 cut(s)	99, 189, 200
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	14, 196
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	14, 38, 142
LpnPI	CCDG	4 cut(s)	25, 95, 139, 216
Lsp1109I	GCAGC	4 cut(s)	99, 121, 169, 172
LweI	GCATC	2 cut(s)	85, 160
MaeI	CTAG	1 cut(s)	206
MalI	GATC	2 cut(s)	16, 198
MboI	GATC	2 cut(s)	14, 196
MboII	GAAGA	3 cut(s)	44, 131, 167
MflI	RGATCY	1 cut(s)	196
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	150, 184, 272
MroI	TCCGGA	1 cut(s)	11
MseI	TTAA	1 cut(s)	343
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	82, 109, 179, 191
NdeII	GATC	2 cut(s)	14, 196
NlaIV	GGNNCC	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	52, 331
PkrI	GCNGC	5 cut(s)	8, 111, 114, 184, 187
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspFI	CCCAGC	2 cut(s)	81, 230
PspN4I	GGNNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	5 cut(s)	7, 110, 113, 183, 186
Sau3AI	GATC	2 cut(s)	14, 196
SchI	GAGTC	1 cut(s)	91
SetI	ASST	7 cut(s)	43, 70, 105, 114, 184, 217, 283
SfaNI	GCATC	2 cut(s)	85, 160
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	178, 334
TasI	AATT	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	52, 331
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	5 cut(s)	6, 109, 112, 182, 185
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	232
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.