MD11G1162900.v1.1

Belongs to the glycosyltransferase 29 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
16443357 .. 16444631
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1162900.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGCCAAAGTCTGTAGAAAACCAGGATGAACCCAACACGCAGAGCATCAAGATCTGCACTCCCATCTATTTCTGGCCGCATTTACCGGCCCCCATCAACCCTTTCAACGATCTCTTCGTTCTTCCCATGAAGCGCTCGGTCCGCCCATTATTCAGCATTCTCCTTCTCATTGTGTTCGCCGCCACGCTGACTTGCCGGAACGCCGTCCGCCATACCTTTGAGCTCGAGAAGAAGGTGCTAATCCAACCGCCAAAGCCGGTGTTCAATGCCACTCTGCTCAGATTCGCCGCCGTTGATGCAGGCGAAGCTGAAGCCAAGAAGGAGATAGAGCAGCTGTTGGAGGGTAACCTTCTCGGACGGTACCGGACTTTTGCTTCGTGGAGGCGATTTAATCACCAGGATATCAGAACAAGGACGTCCGTTGGATTGCCGGTAATGCTCCGCTCTCCTCAGTTCTATCGTTATTGGTTGGATTTTAGGAGGGTTTTGAGTGACTGGTCGAGAAACAAACGGTTTCATGCTGATGTTATGTTGGATTTAGTGAGACTTGTTAGGCCGCCCATTGACAGGCACAATGGCTTGGTGGGTTCGGAGCAACGGCGTTATTCGTCGTGTGCAGTTGTTGGAAACAGTGGAATTTTGTTGAACAGTAATCATGGAGCTCTCATTGATAGTCATGAGGTAGTCATTCGATTGAACAATGCTAGAATTGAGAGTTTTTCGGAGAAAGTTGGGTCGAAAACCAGCATTTCGTTTGTAAATAGTAACATTTTGCATCTTTGTGCTAGGAGAGATGGTTGTTTTTGCCACCCTTATGGACTAAATGTGCCAATGATCATGTACATTTGCCAACCGCTGCATTTCTTCGATTACACGATATGCAATGTGTCCCACAAAGCGCCTTTGCTGGTGACTGATCCGCGGTTTGATGTGTTGTGTGCGAGGATCGTGAAGTATTATTCGTTGAAATGGTTTGTGGAGGAGACGGGGAAGTCGTTTGAGGAATGGGCTGCTGTTCATGATGGTTCCGTGTTTCATTACTCTTCCGGTATGCAGGCTATCGTGCTCGCTTTGGGGATTTGTGACAAAGTTAGTGTTTTTGGATTTGGGAAGTCGGATTCAGCTAAGCATCATTACCATACGAGCCAGAAGGCCGAGCTTGGGTTGCACGATTATCCAGCGGAGTACGCTTTCTATCACGATTTAGTTGAGAGACCGCAGGTAATACCGTTCCTTTCGGAGAAATTCAAGATTCCTCCTGTGGTTCTATATTAA

Protein Analysis

425

Amino Acids

48.64

Weight (kDa)

9.05

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 175 - 404 1e-37 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012540)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 991
AatII GACGTC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 1210
Acc65I GGTACC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 360
AccBSI CCGCTC 1 cut(s) 444
AccII CGCG 1 cut(s) 922
AclWI GGATC 2 cut(s) 911, 953
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 2 cut(s) 636, 1244
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 3 cut(s) 362, 842, 1187
AfeI AGCGCT 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 567, 1161
AgsI TTSAA 6 cut(s) 106, 265, 646, 697, 967, 1249
AjnI CCWGG 2 cut(s) 21, 396
AluBI AGCT 6 cut(s) 223, 308, 334, 662, 1124, 1159
AluI AGCT 6 cut(s) 223, 308, 334, 662, 1124, 1159
Alw21I GWGCWC 3 cut(s) 225, 664, 1068
Alw26I GTCTC 3 cut(s) 538, 977, 1207
AlwI GGATC 2 cut(s) 911, 953
Ama87I CYCGRG 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 134
AoxI GGCC 4 cut(s) 74, 87, 554, 1152
ApeKI GCWGC 3 cut(s) 331, 856, 1010
ApoI RAATTY 2 cut(s) 636, 1244
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
Asp718I GGTACC 1 cut(s) 360
AspLEI GCGC 2 cut(s) 135, 901
AspS9I GGNCC 2 cut(s) 88, 139
AsuHPI GGTGA 2 cut(s) 386, 922
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 360
BanII GRGCYC 2 cut(s) 225, 664
Bbv12I GWGCWC 3 cut(s) 225, 664, 1068
BbvI GCAGC 3 cut(s) 343, 843, 997
BccI CCATC 4 cut(s) 71, 101, 788, 1016
BceAI ACGGC 3 cut(s) 188, 275, 614
BciT130I CCWGG 2 cut(s) 23, 398
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 3 cut(s) 538, 977, 1207
BfaI CTAG 2 cut(s) 705, 786
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 2 cut(s) 136, 902
BfuAI ACCTGC 1 cut(s) 1210
BglII AGATCT 1 cut(s) 51
BisI GCNGC 7 cut(s) 77, 180, 288, 332, 557, 857, 1011
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 7 cut(s) 78, 181, 289, 333, 558, 858, 1012
Bme1390I CCNGG 2 cut(s) 23, 398
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 88, 139
BmiI GGNNCC 3 cut(s) 90, 362, 1027
BmrFI CCNGG 2 cut(s) 23, 398
BmsI GCATC 4 cut(s) 54, 286, 784, 1138
Bpu1102I GCTNAGC 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 1207
BsaJI CCNNGG 1 cut(s) 920
BsaWI WCCGGW 2 cut(s) 363, 1046
BsaXI ACNNNNNCTCC 2 cut(s) 781, 811
Bsc4I CCNNNNNNNGG 2 cut(s) 567, 1161
Bse118I RCCGGY 3 cut(s) 85, 256, 430
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 2 cut(s) 23, 398
BseDI CCNNGG 1 cut(s) 920
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 567, 1161
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 2 cut(s) 292, 464
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 2 cut(s) 438, 995
BseXI GCAGC 3 cut(s) 343, 843, 997
BsgI GTGCAG 2 cut(s) 40, 636
Bsh1236I CGCG 1 cut(s) 922
BshFI GGCC 4 cut(s) 76, 89, 556, 1154
BshNI GGYRCC 1 cut(s) 360
BsiHKAI GWGCWC 3 cut(s) 225, 664, 1068
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 6 cut(s) 86, 196, 257, 364, 431, 1047
BslFI GGGAC 1 cut(s) 874
BslI CCNNNNNNNGG 2 cut(s) 567, 1161
BsmAI GTCTC 3 cut(s) 538, 977, 1207
BsmBI CGTCTC 1 cut(s) 977
BsmFI GGGAC 1 cut(s) 874
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 4 cut(s) 76, 89, 556, 1154
Bso31I GGTCTC 1 cut(s) 1207
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 225, 664, 1068
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 5 cut(s) 51, 109, 834, 916, 945
Bsp1720I GCTNAGC 1 cut(s) 1125
BspANI GGCC 4 cut(s) 76, 89, 556, 1154
BspCNI CTCAG 2 cut(s) 291, 463
BspFNI CGCG 1 cut(s) 922
BspHI TCATGA 2 cut(s) 676, 1018
BspLI GGNNCC 3 cut(s) 90, 362, 1027
BspMI ACCTGC 1 cut(s) 1210
BspPI GGATC 2 cut(s) 911, 953
BspT107I GGYRCC 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 1207
BsrBI CCGCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 889
BsrFI RCCGGY 3 cut(s) 85, 256, 430
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 1 cut(s) 500
BssAI RCCGGY 3 cut(s) 85, 256, 430
BssECI CCNNGG 1 cut(s) 920
BssMI GATC 5 cut(s) 51, 109, 834, 916, 945
BssNI GRCGYC 1 cut(s) 416
Bst2UI CCWGG 2 cut(s) 23, 398
Bst4CI ACNGT 5 cut(s) 360, 513, 632, 650, 1230
Bst6I CTCTTC 2 cut(s) 119, 1048
BstACI GRCGYC 1 cut(s) 416
BstAUI TGTACA 1 cut(s) 840
BstC8I GCNNGC 3 cut(s) 301, 1056, 1068
BstDEI CTNAG 3 cut(s) 278, 450, 1125
BstDSI CCRYGG 1 cut(s) 920
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 922
BstH2I RGCGCY 2 cut(s) 136, 902
BstHHI GCGC 2 cut(s) 135, 901
BstKTI GATC 5 cut(s) 54, 112, 837, 919, 948
BstMAI GTCTC 3 cut(s) 538, 977, 1207
BstMBI GATC 5 cut(s) 51, 109, 834, 916, 945
BstMWI GCNNNNNNNGC 6 cut(s) 141, 296, 305, 436, 1165, 1187
BstNI CCWGG 2 cut(s) 23, 398
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 21, 396
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 1 cut(s) 922
BstV1I GCAGC 3 cut(s) 343, 843, 997
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 815
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 4 cut(s) 76, 89, 556, 1154
BtgI CCRYGG 1 cut(s) 920
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 637
BveI ACCTGC 1 cut(s) 1210
Cac8I GCNNGC 3 cut(s) 301, 1056, 1068
CciI TCATGA 2 cut(s) 676, 1018
CfoI GCGC 2 cut(s) 135, 901
Cfr10I RCCGGY 3 cut(s) 85, 256, 430
Cfr13I GGNCC 2 cut(s) 88, 139
Cfr42I CCGCGG 1 cut(s) 923
CpoI CGGWCCG 1 cut(s) 139
Csp6I GTAC 3 cut(s) 361, 841, 1186
CspI CGGWCCG 1 cut(s) 139
CviAII CATG 6 cut(s) 127, 518, 656, 677, 838, 1019
CviQI GTAC 3 cut(s) 361, 841, 1186
DdeI CTNAG 3 cut(s) 278, 450, 1125
DpnI GATC 5 cut(s) 53, 111, 836, 918, 947
DpnII GATC 5 cut(s) 51, 109, 834, 916, 945
DrdI GACNNNNNNGTC 1 cut(s) 991
DseDI GACNNNNNNGTC 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 119, 1048
EarI CTCTTC 2 cut(s) 119, 1048
EciI GGCGGA 2 cut(s) 131, 197
Ecl136II GAGCTC 2 cut(s) 223, 662
Eco24I GRGCYC 2 cut(s) 225, 664
Eco31I GGTCTC 1 cut(s) 1207
Eco32I GATATC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 139
Eco47III AGCGCT 1 cut(s) 134
Eco53kI GAGCTC 2 cut(s) 223, 662
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 344
EcoICRI GAGCTC 2 cut(s) 223, 662
EcoO65I GGTNACC 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 21, 396
EcoRV GATATC 1 cut(s) 403
EcoT38I GRGCYC 2 cut(s) 225, 664
Esp3I CGTCTC 1 cut(s) 977
FaeI CATG 6 cut(s) 130, 521, 659, 680, 841, 1022
FaqI GGGAC 1 cut(s) 874
FatI CATG 6 cut(s) 126, 517, 655, 676, 837, 1018
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 7 cut(s) 77, 180, 288, 332, 557, 857, 1011
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 2 cut(s) 225, 664
Fsp4HI GCNGC 7 cut(s) 77, 180, 288, 332, 557, 857, 1011
FspBI CTAG 2 cut(s) 705, 786
GlaI GCGC 2 cut(s) 134, 900
GluI GCNGC 7 cut(s) 77, 180, 288, 332, 557, 857, 1011
HaeII RGCGCY 2 cut(s) 136, 902
HaeIII GGCC 4 cut(s) 76, 89, 556, 1154
HapII CCGG 6 cut(s) 86, 196, 257, 364, 431, 1047
HhaI GCGC 2 cut(s) 135, 901
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 6 cut(s) 130, 521, 659, 680, 841, 1022
Hin6I GCGC 2 cut(s) 133, 899
HinP1I GCGC 2 cut(s) 133, 899
HinfI GANTC 3 cut(s) 282, 1118, 1252
HpaII CCGG 6 cut(s) 86, 196, 257, 364, 431, 1047
HphI GGTGA 2 cut(s) 386, 922
Hpy188I TCNGA 7 cut(s) 281, 356, 407, 592, 724, 1117, 1240
Hpy188III TCNNGA 8 cut(s) 49, 226, 501, 677, 949, 1019, 1199, 1249
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 5 cut(s) 173, 226, 313, 359, 1144
HpyCH4III ACNGT 5 cut(s) 360, 513, 632, 650, 1230
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 8 cut(s) 57, 299, 617, 775, 859, 882, 1054, 1168
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 296, 305, 436, 1165, 1187
HpyF3I CTNAG 3 cut(s) 278, 450, 1125
HpySE526I ACGT 1 cut(s) 416
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 6 cut(s) 130, 521, 659, 680, 841, 1022
HspAI GCGC 2 cut(s) 133, 899
KpnI GGTACC 1 cut(s) 364
Ksp22I TGATCA 1 cut(s) 834
KspI CCGCGG 1 cut(s) 923
Kzo9I GATC 5 cut(s) 51, 109, 834, 916, 945
LmnI GCTCC 3 cut(s) 444, 592, 659
Lsp1109I GCAGC 3 cut(s) 343, 843, 997
LweI GCATC 4 cut(s) 54, 286, 784, 1138
MaeI CTAG 2 cut(s) 705, 786
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 5 cut(s) 344, 491, 764, 910, 1082
MalI GATC 5 cut(s) 53, 111, 836, 918, 947
MbiI CCGCTC 1 cut(s) 444
MboI GATC 5 cut(s) 51, 109, 834, 916, 945
MboII GAAGA 5 cut(s) 106, 113, 241, 856, 1035
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 3 cut(s) 225, 664, 1068
MluCI AATT 3 cut(s) 636, 708, 1244
MmeI TCCRAC 7 cut(s) 268, 318, 403, 450, 513, 604, 1095
MnlI CCTC 9 cut(s) 334, 375, 459, 474, 673, 936, 973, 994, 1266
MseI TTAA 2 cut(s) 390, 1273
MslI CAYNNNNRTG 3 cut(s) 522, 780, 813
MspA1I CMGCKG 4 cut(s) 334, 856, 922, 1181
MspI CCGG 6 cut(s) 86, 196, 257, 364, 431, 1047
MspR9I CCNGG 2 cut(s) 23, 398
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 2 cut(s) 23, 398
MvnI CGCG 1 cut(s) 922
MwoI GCNNNNNNNGC 6 cut(s) 141, 296, 305, 436, 1165, 1187
NdeII GATC 5 cut(s) 51, 109, 834, 916, 945
NlaIII CATG 6 cut(s) 130, 521, 659, 680, 841, 1022
NlaIV GGNNCC 3 cut(s) 90, 362, 1027
NmeAIII GCCGAG 1 cut(s) 1180
NmuCI GTSAC 3 cut(s) 491, 910, 1082
PaeR7I CTCGAG 1 cut(s) 224
PagI TCATGA 2 cut(s) 676, 1018
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 992
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 282, 1118, 1252
PkrI GCNGC 7 cut(s) 78, 181, 289, 333, 558, 858, 1012
Psp124BI GAGCTC 2 cut(s) 225, 664
Psp6I CCWGG 2 cut(s) 21, 396
PspEI GGTNACC 1 cut(s) 344
PspGI CCWGG 2 cut(s) 21, 396
PspN4I GGNNCC 3 cut(s) 90, 362, 1027
PspPI GGNCC 2 cut(s) 88, 139
PsuI RGATCY 1 cut(s) 51
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 3 cut(s) 362, 842, 1187
RsaNI GTAC 3 cut(s) 361, 841, 1186
RseI CAYNNNNRTG 3 cut(s) 522, 780, 813
Rsr2I CGGWCCG 1 cut(s) 139
RsrII CGGWCCG 1 cut(s) 139
SacI GAGCTC 2 cut(s) 225, 664
SacII CCGCGG 1 cut(s) 923
SaqAI TTAA 2 cut(s) 390, 1273
SatI GCNGC 7 cut(s) 77, 180, 288, 332, 557, 857, 1011
Sau3AI GATC 5 cut(s) 51, 109, 834, 916, 945
Sau96I GGNCC 2 cut(s) 88, 139
ScrFI CCNGG 2 cut(s) 23, 398
SduI GDGCHC 3 cut(s) 225, 664, 1068
SfaNI GCATC 4 cut(s) 54, 286, 784, 1138
SfcI CTRYAG 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 224
Sfr303I CCGCGG 1 cut(s) 923
SgrBI CCGCGG 1 cut(s) 923
SinI GGWCC 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 224
SmiMI CAYNNNNRTG 3 cut(s) 522, 780, 813
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 3 cut(s) 636, 708, 1244
SspMI CTAG 2 cut(s) 705, 786
SstI GAGCTC 2 cut(s) 225, 664
StyD4I CCNGG 2 cut(s) 21, 396
TaaI ACNGT 5 cut(s) 360, 513, 632, 650, 1230
TaiI ACGT 1 cut(s) 419
TaqI TCGA 5 cut(s) 225, 500, 691, 737, 867
TaqII GACCGA 1 cut(s) 127
TasI AATT 3 cut(s) 636, 708, 1244
TatI WGTACW 1 cut(s) 840
TauI GCSGC 4 cut(s) 79, 182, 290, 559
TfiI GAWTC 3 cut(s) 282, 1118, 1252
Tru1I TTAA 2 cut(s) 390, 1273
Tru9I TTAA 2 cut(s) 390, 1273
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 3 cut(s) 491, 910, 1082
TseI GCWGC 3 cut(s) 331, 856, 1010
Tsp45I GTSAC 3 cut(s) 491, 910, 1082
TspDTI ATGAA 5 cut(s) 42, 143, 506, 1007, 1025
TspGWI ACGGA 2 cut(s) 409, 1018
TspRI CASTG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 2 cut(s) 636, 1244
XhoI CTCGAG 1 cut(s) 224
XspI CTAG 2 cut(s) 705, 786
ZraI GACGTC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.