Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012540

Physical Location & Seq

Genomic Coordinates Forward (+)

6191587 .. 6192314

Gene Structure 728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATGCCAGAGCAAGGACCTCTGCAGGCTATCCGACTTGTGAAGAATCCGATTGATGGGAAAAATGGTACGGAGGGAAGTTCGGAAGAGAAGCGTTACTCGTCTTGTGCTGTGGTTGGGAACAGTGGGATTTTGTTGAAGAGTAATCATGGTGCATTGATTGATAGTCATGAGAATGTGCCTATAATTATGTACATTTGTCAACCGGTGCATTTCTTTGATTACGCAATATGCAATGTGTCCCATAAAGCGCCTTTGCTTGTGACTGATCTTCGGTTGGATGTGCTGAGTGCAAGGATAGTGAAGTATTATTCTTTGAAACGGTTTGGGGAGGAGACGGGGAAGTCATTCTATGAATGGGGGGCTGCTCATGATGCTGCTATGTTTCATTACTCTTCTGGCATGCAAGCAATAATGCTTGCCTTGGGGATTTGTGACAAAGTTAGTATATTTGGCTTTGGGAAGTCGAATCATGTGTTCTGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001665 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0097503 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990743

KEGG Pathways

Metabolic & Signaling

ko00512 ko00533 ko00603 ko00604 ko01100 map00512 map00533 map00603 map00604 map01100

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

163

Amino Acids

17.96

Weight (kDa)

7.04

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	22 - 60	6.6e-10	Glycosyltransferase family 29 (sialyltransferase)
Glyco_transf_29	PF00777	125 - 156	3.3e-06	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08280
fragaria_vesca	FvH4_3g24660 FvH4_3g24660 FvH4_3g24660
malus_domestica	MD03G1142400.v1.1 MD11G1162900.v1.1
prunus_persica	Prupe.6G127500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044221 RchiOBHm_Chr6g0296901
rosa_laevigata	RLG00000011025 RLG00000034256
rosa_multiflora	Rmu_sc0000776.1_g000072
rosa_roxburghii	Rroxscaffold_1G00036810
rosa_rugosa	Rorug05G0212600
rosa_samantha	Rh5AG296700 Rh5BG304200 Rh5CG331200 Rh5DG313000
rosa_wichuraiana	Rw5G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	343
AfaI	GTAC	2 cut(s)	70, 194
AfiI	CCNNNNNNNGG	2 cut(s)	14, 56
AgeI	ACCGGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	139, 319
Alw26I	GTCTC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	365, 377
AsiGI	ACCGGT	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	352, 364
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	487
BfmI	CTRYAG	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	2 cut(s)	366, 378
BlsI	GCNGC	2 cut(s)	367, 379
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmsI	GCATC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 56
Bse118I	RCCGGY	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	14, 56
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	352, 364
BshTI	ACCGGT	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	14, 56
BsmAI	GTCTC	1 cut(s)	329
BsmBI	CGTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	226
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	268
BspCNI	CTCAG	1 cut(s)	279
BspHI	TCATGA	2 cut(s)	169, 370
BspMAI	CTGCAG	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	125, 324
Bst6I	CTCTTC	3 cut(s)	81, 134, 400
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	27, 404, 408, 420
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	1 cut(s)	286
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	352, 364
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	4 cut(s)	27, 404, 408, 420
CciI	TCATGA	2 cut(s)	169, 370
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	69, 193
CspAI	ACCGGT	1 cut(s)	205
CviAII	CATG	5 cut(s)	149, 170, 371, 403, 473
CviJI	RGCY	3 cut(s)	29, 365, 456
CviKI_1	RGCY	3 cut(s)	29, 365, 456
CviQI	GTAC	2 cut(s)	69, 193
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	3 cut(s)	81, 134, 400
EarI	CTCTTC	3 cut(s)	81, 134, 400
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	329
FaeI	CATG	5 cut(s)	152, 173, 374, 406, 476
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	5 cut(s)	148, 169, 370, 402, 472
Fnu4HI	GCNGC	2 cut(s)	366, 378
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	366, 378
FspBI	CTAG	1 cut(s)	487
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	366, 378
HaeII	RGCGCY	1 cut(s)	254
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	5 cut(s)	152, 173, 374, 406, 476
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	203
HindII	GTYRAC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	46, 469
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	3 cut(s)	35, 51, 85
Hpy188III	TCNNGA	3 cut(s)	170, 371, 481
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	125, 324
HpyCH4V	TGCA	6 cut(s)	25, 155, 211, 234, 293, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	5 cut(s)	152, 173, 374, 406, 476
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	5 cut(s)	11, 21, 219, 384, 466
Lsp1109I	GCAGC	2 cut(s)	352, 364
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	487
MaeIII	GTNAC	3 cut(s)	95, 262, 434
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	55, 98, 151, 263, 387
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	2 cut(s)	58, 258
MnlI	CCTC	3 cut(s)	30, 67, 325
MroXI	GAANNNNTTC	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	5 cut(s)	152, 173, 374, 406, 476
NmuCI	GTSAC	2 cut(s)	262, 434
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PagI	TCATGA	2 cut(s)	169, 370
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	46, 469
PinAI	ACCGGT	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	367, 379
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	17
PspPPI	RGGWCCY	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	27
RsaI	GTAC	2 cut(s)	70, 194
RsaNI	GTAC	2 cut(s)	69, 193
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	2 cut(s)	366, 378
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	17
SetI	ASST	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	174
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	125, 324
TaqI	TCGA	1 cut(s)	467
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	46, 469
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	262, 434
TseI	GCWGC	2 cut(s)	365, 377
Tsp45I	GTSAC	2 cut(s)	262, 434
TspDTI	ATGAA	2 cut(s)	369, 377
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	17
XceI	RCATGY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.