Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012540

Physical Location & Seq

Genomic Coordinates Forward (+)

39472850 .. 39476546

Gene Structure 3697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034256

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGACGAAATCTACGGTTACCCAAAATGGTCCCAATCCACAGAGCTTCAAGATCTGCAGGCTCTATGTCTGGCCATATTTGGCAACACCCACAAACCCTCTCAACGATTTCTTCATCCTTCCAATGAAGCTCTCGGTTCGCCCACTCTTCAGCCTCCTGCTACTCATTGTCTTCGCCGCCACTCTGAGCTGCCGAACCGCCGTGCGGCACAGTCTGAGCTTGATTGAGTTCGAGAAGAAGATACTCGTTCCGCCGCCGAAGCCAGTGTTCAACGCTACTCTGCTGAAATACGCTGCAGACGATGTGGGTGGAGCTCAAGCCAAGAAGGAAGTAGAGCAACTTCTGGACGGTAACTTTGCTAGTCTGGGGCGGTACCGGAGTTTCGTAACTTGGAGAAGGTTTAATCACCATGATGCCAGAGCAAGGACCTCTGCAGGCTATCCGGTAATGCTCCGCTCTCCTCAGTTCTATCGTTATTGGTTAGAGTTTCGGAGATTGTTGAGTGAATGGTCAAGAAACAGAAGGTTTCAGCCTGATATTATGTTGGATTTGGTTAGACTTGTGAAGAATCCGATTGATGGGAAAAATGGTACGGAGGGAAGTTCGGAAGAGAAGCGTTACTCGTCTTGTGCTGTGGTTGGGAACAGTGGGATTTTGTTGAAGAGTAATCATGGTGCATTGATTGATAGTCATGAGGTAGTTATTCGATTGAACAATGCGAGGATAGGGGGCTTTGTGGGAAAAGTTGGGTCCAAGACGAACATTTCATTTGTAAATAGTAACATTTTGCATCTTTGTGCTAGGAGAAATGGTTGTTTTTGCCACCCTTATGGACAGAATGTGCCTATAATTATGTACATTTGTCAACCGGTGCATTTCTTTGATTACGCAATATGCAATGTGTCCCATAAAGCGCCTTTGCTTGTGACTGATCTTCGGTTGGATGTGCTGAGTGCAAGGATAGTGAAGTATTATTCGTTGAAACGGTTTGGGGAGGAGACGGGGAAGTCATTCGATGAATGGGGGGCTGCTCATGATGCTGCTATGTTCCATTACTCTTCTGGCATGCAAGCAATTATGCTTGCCTTGGGGATTTGTGACAAAGTTAGTATATTTGGCTTTGGGAAGTCAGAGTCAGCTAAGCACCATTACCATACAAATCAAAAGGCTGAGCTTCGGTTGCACGATTATGAGGCTGAGTATGCTTTCTACCATGATTTAGTGGAGAGACCACAGATTCCTAGTGGTGGTTTTGATGTTGGTGGTGGTGTTAAAATGGTGACAGTGGTGGCGGCTACTGGTCAAAGATTGGAGTGGCTAGACTTCCTTCTTCAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001665 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0097503 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990743

KEGG Pathways

Metabolic & Signaling

ko00512 ko00533 ko00603 ko00604 ko01100 map00512 map00533 map00603 map00604 map01100

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

447

Amino Acids

50.36

Weight (kDa)

9.35

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	177 - 409	2.1e-37	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08280
fragaria_vesca	FvH4_3g24660 FvH4_3g24660 FvH4_3g24660
malus_domestica	MD03G1142400.v1.1 MD11G1162900.v1.1
prunus_persica	Prupe.6G127500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044221 RchiOBHm_Chr6g0296901
rosa_laevigata	RLG00000011025 RLG00000034256
rosa_multiflora	Rmu_sc0000776.1_g000072
rosa_roxburghii	Rroxscaffold_1G00036810
rosa_rugosa	Rorug05G0212600
rosa_samantha	Rh5AG296700 Rh5BG304200 Rh5CG331200 Rh5DG313000
rosa_wichuraiana	Rw5G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1006
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	372
AccBSI	CCGCTC	1 cut(s)	456
AciI	CCGC	8 cut(s)	177, 198, 205, 251, 254, 370, 454, 1292
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	133, 1316
AfaI	GTAC	3 cut(s)	374, 592, 857
AfiI	CCNNNNNNNGG	4 cut(s)	204, 423, 578, 1247
AgeI	ACCGGT	1 cut(s)	868
AgsI	TTSAA	5 cut(s)	49, 271, 661, 712, 982
AluBI	AGCT	7 cut(s)	45, 130, 189, 219, 314, 1139, 1174
AluI	AGCT	7 cut(s)	45, 130, 189, 219, 314, 1139, 1174
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	992, 1222
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	4 cut(s)	189, 293, 1028, 1040
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsiGI	ACCGGT	1 cut(s)	868
Asp700I	GAANNNNTTC	1 cut(s)	1010
Asp718I	GGTACC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	3 cut(s)	29, 426, 750
AsuHPI	GGTGA	2 cut(s)	398, 1291
AvaII	GGWCC	3 cut(s)	29, 426, 750
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BalI	TGGCCA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	316
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	4 cut(s)	176, 280, 1015, 1027
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	992, 1222
BfaI	CTAG	4 cut(s)	360, 801, 1242, 1319
BfmI	CTRYAG	3 cut(s)	55, 294, 432
BfoI	RGCGCY	1 cut(s)	917
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	8 cut(s)	177, 190, 206, 254, 294, 1029, 1041, 1293
BlpI	GCTNAGC	2 cut(s)	1140, 1170
BlsI	GCNGC	8 cut(s)	178, 191, 207, 255, 295, 1030, 1042, 1294
Bme18I	GGWCC	3 cut(s)	29, 426, 750
BmgT120I	GGNCC	3 cut(s)	29, 426, 750
BmiI	GGNNCC	3 cut(s)	31, 374, 751
BmsI	GCATC	3 cut(s)	403, 799, 1027
BpiI	GAAGAC	1 cut(s)	163
Bpu1102I	GCTNAGC	2 cut(s)	1140, 1170
BpuEI	CTTGAG	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	1222
BsaJI	CCNNGG	1 cut(s)	1086
BsaWI	WCCGGW	3 cut(s)	375, 442, 868
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 423, 578, 1247
Bse118I	RCCGGY	1 cut(s)	868
Bse1I	ACTGG	2 cut(s)	263, 1303
Bse3DI	GCAATG	1 cut(s)	904
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	2 cut(s)	114, 949
BseLI	CCNNNNNNNGG	4 cut(s)	204, 423, 578, 1247
BseMI	GCAATG	1 cut(s)	904
BseMII	CTCAG	6 cut(s)	176, 206, 476, 941, 1161, 1188
BseNI	ACTGG	2 cut(s)	263, 1303
BseRI	GAGGAG	2 cut(s)	450, 1010
BseXI	GCAGC	4 cut(s)	176, 280, 1015, 1027
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	372
BshTI	ACCGGT	1 cut(s)	868
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	3 cut(s)	376, 443, 869
BslFI	GGGAC	2 cut(s)	15, 889
BslI	CCNNNNNNNGG	4 cut(s)	204, 423, 578, 1247
BsmAI	GTCTC	2 cut(s)	992, 1222
BsmBI	CGTCTC	1 cut(s)	992
BsmFI	GGGAC	2 cut(s)	15, 889
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	1222
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	2 cut(s)	51, 931
Bsp1720I	GCTNAGC	2 cut(s)	1140, 1170
BspACI	CCGC	8 cut(s)	177, 198, 205, 251, 254, 370, 454, 1292
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	6 cut(s)	177, 207, 475, 942, 1162, 1189
BspHI	TCATGA	2 cut(s)	691, 1033
BspLI	GGNNCC	3 cut(s)	31, 374, 751
BspMAI	CTGCAG	3 cut(s)	59, 298, 436
BspT107I	GGYRCC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	1222
BsrBI	CCGCTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	1 cut(s)	868
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	2 cut(s)	263, 1303
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	1 cut(s)	1086
BssMI	GATC	2 cut(s)	51, 931
BssT1I	CCWWGG	1 cut(s)	1086
Bst4CI	ACNGT	6 cut(s)	16, 212, 350, 647, 987, 1285
Bst6I	CTCTTC	4 cut(s)	152, 603, 656, 1063
BstAUI	TGTACA	1 cut(s)	855
BstC8I	GCNNGC	5 cut(s)	59, 436, 1067, 1071, 1083
BstDEI	CTNAG	8 cut(s)	185, 215, 462, 950, 1140, 1170, 1197, 1338
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	114, 949
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	2 cut(s)	54, 934
BstMAI	GTCTC	2 cut(s)	992, 1222
BstMBI	GATC	2 cut(s)	51, 931
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 1037, 1180, 1202
BstNSI	RCATGY	1 cut(s)	1069
BstPI	GGTNACC	1 cut(s)	16
BstSFI	CTRYAG	3 cut(s)	55, 294, 432
BstV1I	GCAGC	4 cut(s)	176, 280, 1015, 1027
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	114, 949
BtsIMutI	CAGTG	3 cut(s)	270, 652, 1290
Cac8I	GCNNGC	5 cut(s)	59, 436, 1067, 1071, 1083
CciI	TCATGA	2 cut(s)	691, 1033
CfoI	GCGC	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	29, 426, 750
Csp6I	GTAC	3 cut(s)	373, 591, 856
CspAI	ACCGGT	1 cut(s)	868
CviAII	CATG	6 cut(s)	410, 671, 692, 1034, 1066, 1214
CviQI	GTAC	3 cut(s)	373, 591, 856
DdeI	CTNAG	8 cut(s)	185, 215, 462, 950, 1140, 1170, 1197, 1338
DpnI	GATC	2 cut(s)	53, 933
DpnII	GATC	2 cut(s)	51, 931
DrdI	GACNNNNNNGTC	1 cut(s)	1006
DseDI	GACNNNNNNGTC	1 cut(s)	1006
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	4 cut(s)	152, 603, 656, 1063
EarI	CTCTTC	4 cut(s)	152, 603, 656, 1063
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	1086
Eco24I	GRGCYC	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	1222
Eco47I	GGWCC	3 cut(s)	29, 426, 750
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	133, 1316
Eco91I	GGTNACC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	426
EcoO65I	GGTNACC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	1086
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	1086
Esp3I	CGTCTC	1 cut(s)	992
FaeI	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
FaqI	GGGAC	2 cut(s)	15, 889
FatI	CATG	6 cut(s)	409, 670, 691, 1033, 1065, 1213
Fnu4HI	GCNGC	8 cut(s)	177, 190, 206, 254, 294, 1029, 1041, 1293
FokI	GGATG	2 cut(s)	101, 956
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	8 cut(s)	177, 190, 206, 254, 294, 1029, 1041, 1293
FspBI	CTAG	4 cut(s)	360, 801, 1242, 1319
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	8 cut(s)	177, 190, 206, 254, 294, 1029, 1041, 1293
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	376, 443, 869
HhaI	GCGC	1 cut(s)	916
Hin1II	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HinfI	GANTC	3 cut(s)	568, 1133, 1237
HpaII	CCGG	3 cut(s)	376, 443, 869
HphI	GGTGA	2 cut(s)	398, 1291
Hpy166II	GTNNAC	1 cut(s)	866
Hpy188I	TCNGA	6 cut(s)	186, 216, 492, 573, 607, 1132
Hpy188III	TCNNGA	6 cut(s)	49, 232, 344, 513, 692, 1034
Hpy8I	GTNNAC	1 cut(s)	866
HpyAV	CCTTC	5 cut(s)	128, 319, 390, 516, 1337
HpyCH4III	ACNGT	6 cut(s)	16, 212, 350, 647, 987, 1285
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 1037, 1180, 1202
HpyF3I	CTNAG	8 cut(s)	185, 215, 462, 950, 1140, 1170, 1197, 1338
Hsp92II	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
HspAI	GCGC	1 cut(s)	914
KpnI	GGTACC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	51, 931
LmnI	GCTCC	2 cut(s)	311, 456
Lsp1109I	GCAGC	4 cut(s)	176, 280, 1015, 1027
LweI	GCATC	3 cut(s)	403, 799, 1027
MaeI	CTAG	4 cut(s)	360, 801, 1242, 1319
MaeIII	GTNAC	8 cut(s)	16, 350, 385, 617, 779, 925, 1097, 1279
MalI	GATC	2 cut(s)	53, 933
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	2 cut(s)	51, 931
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	2 cut(s)	849, 1074
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	1142
MmeI	TCCRAC	2 cut(s)	525, 921
MnlI	CCTC	9 cut(s)	108, 164, 439, 471, 589, 688, 714, 988, 1186
Mox20I	TGGCCA	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	1010
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	2 cut(s)	402, 1272
MslI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1188
Msp20I	TGGCCA	1 cut(s)	73
MspI	CCGG	3 cut(s)	376, 443, 869
MwoI	GCNNNNNNNGC	4 cut(s)	259, 1037, 1180, 1202
NdeII	GATC	2 cut(s)	51, 931
NlaIII	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
NlaIV	GGNNCC	3 cut(s)	31, 374, 751
NmuCI	GTSAC	3 cut(s)	925, 1097, 1279
NspI	RCATGY	1 cut(s)	1069
PaeI	GCATGC	1 cut(s)	1069
PagI	TCATGA	2 cut(s)	691, 1033
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	1010
PfeI	GAWTC	2 cut(s)	568, 1237
PinAI	ACCGGT	1 cut(s)	868
PkrI	GCNGC	8 cut(s)	178, 191, 207, 255, 295, 1030, 1042, 1294
PleI	GAGTC	1 cut(s)	1141
PpsI	GAGTC	1 cut(s)	1141
PpuMI	RGGWCCY	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	426
PspEI	GGTNACC	1 cut(s)	16
PspN4I	GGNNCC	3 cut(s)	31, 374, 751
PspPI	GGNCC	3 cut(s)	29, 426, 750
PspPPI	RGGWCCY	1 cut(s)	426
PstI	CTGCAG	3 cut(s)	59, 298, 436
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	3 cut(s)	374, 592, 857
RsaNI	GTAC	3 cut(s)	373, 591, 856
RseI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1188
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	402, 1272
SatI	GCNGC	8 cut(s)	177, 190, 206, 254, 294, 1029, 1041, 1293
Sau3AI	GATC	2 cut(s)	51, 931
Sau96I	GGNCC	3 cut(s)	29, 426, 750
SchI	GAGTC	1 cut(s)	1142
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	3 cut(s)	403, 799, 1027
SfcI	CTRYAG	3 cut(s)	55, 294, 432
SinI	GGWCC	3 cut(s)	29, 426, 750
SmiMI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1188
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	1069
Sse9I	AATT	2 cut(s)	849, 1074
SsiI	CCGC	8 cut(s)	177, 198, 205, 251, 254, 370, 454, 1292
SspMI	CTAG	4 cut(s)	360, 801, 1242, 1319
SstI	GAGCTC	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	6 cut(s)	16, 212, 350, 647, 987, 1285
TaqI	TCGA	3 cut(s)	231, 706, 1014
TasI	AATT	2 cut(s)	849, 1074
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	4 cut(s)	179, 208, 256, 1295
TfiI	GAWTC	2 cut(s)	568, 1237
Tru1I	TTAA	2 cut(s)	402, 1272
Tru9I	TTAA	2 cut(s)	402, 1272
TscAI	CASTG	3 cut(s)	270, 652, 1290
TseFI	GTSAC	3 cut(s)	925, 1097, 1279
TseI	GCWGC	4 cut(s)	189, 293, 1028, 1040
Tsp45I	GTSAC	3 cut(s)	925, 1097, 1279
TspDTI	ATGAA	4 cut(s)	103, 140, 756, 1032
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	3 cut(s)	270, 652, 1290
VpaK11BI	GGWCC	3 cut(s)	29, 426, 750
XceI	RCATGY	1 cut(s)	1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	1010
XspI	CTAG	4 cut(s)	360, 801, 1242, 1319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.