Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012540

Physical Location & Seq

Genomic Coordinates Forward (+)

40667722 .. 40669013

Gene Structure 1292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGACGAAATCTACAGTTACCCAAAATGGTCCCAATCCACAGAGCTTCAAGATCTGCAGGCTCTATTTCTGGCCACATTTGGCAACACCCACAAACCCTCTCAACGATTTCTTCATCCTTCCAATGAAGCTCTCTGTTCGCCCACTCTTCAGCCTCCTGCTACTCATTGTCTTCGCCGCCACTCTGAGCTGCCGAACCGCCGTGCGGCACACTCTGAGCTTGATTGAGTTCGAGAAGAAGATTCTCGTTCCGCCGCCGAAGCCAGTGTTCAATGCTACTCTGCTGAAATACGCTGCAGACGATGTGGGTGGAGCTCAAGCCAAGAAGGAAGTAGAGCAACTTCTGGACGGTAACTTTGCTAGCCTGGGGCGGTACCGGAGTTTCGCAACTTGGAGAAGGTTTAATCACCATGATGCCAGAGCAAGGACCTCTGCAGGCTATCCGGTAATGCTCCGTTCTCCTCAGTTCTATCGTTATTGGTTAGAGTTTCGGAGATTGTTGAGTGAATGGTCAAGAAACAGAAGGTTTCAGCCTGATATTATGTTGGATTTGGTTAGACTTGTGAAGAATCCGATTGATGGGAAAAATGGTACGGAGGGAAGTTCGGAAGAGAAGCGTTACTCGTCTTGTGCTGTGGTTGGGAACAGTGGGATTTTGTTGAAGAGTAATCATGGTGCATTGATTGATAGTCATGAGGTAGTTATTCGATTGAACAATGCGAGGATACAGGGCTTTTTGGGAAAAGTTGGGTCAAAGACGAACATTTCGTTTGTAAATAGTAACATTTTGCATCTTTGTGCCAGGAGAAATGGTTGTTTTTGCCACCCTTATGGACAGAATGTGCCTATAATTATGTACATTTGTCAACCGGCGCATTTCTTTGATTACGCAATATGCAATGTGTCCCATAAAGCGCCTTTGCTTTGCAAGATAGTGAAGTATTATTCGTTGAAACGGTTTGGGGAGGAGACGGGGAAGTCATTTGATGAATGGGGGGCTGCTCATGATGCTGCTATGTTCCATTACTCTTCTGGCATGCAAGCAATTATGCTTGCCTTGGGGATTTGTGACAAAGTTAGTATATTTGGCTTTGGGAAGTCAGAGTCAGCTAAGCACCATTACCATACAAATCAAAAGGCTGAGCTTCGGTTGCACGATTATGAGGCCGAGTATGCTTTCTACCATGATTTAGTGGAGAGGCCACAGGTAATACCATTCTTTTCAGAAAAGTTCAAGATTCCTCCTGTGGTTATATATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001665 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0097503 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990743

KEGG Pathways

Metabolic & Signaling

ko00512 ko00533 ko00603 ko00604 ko01100 map00512 map00533 map00603 map00604 map01100

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

420

Amino Acids

47.91

Weight (kDa)

9.44

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_29	PF00777	177 - 399	9.4e-35	Glycosyltransferase family 29 (sialyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08280
fragaria_vesca	FvH4_3g24660 FvH4_3g24660 FvH4_3g24660
malus_domestica	MD03G1142400.v1.1 MD11G1162900.v1.1
prunus_persica	Prupe.6G127500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044221 RchiOBHm_Chr6g0296901
rosa_laevigata	RLG00000011025 RLG00000034256
rosa_multiflora	Rmu_sc0000776.1_g000072
rosa_roxburghii	Rroxscaffold_1G00036810
rosa_rugosa	Rorug05G0212600
rosa_samantha	Rh5AG296700 Rh5BG304200 Rh5CG331200 Rh5DG313000
rosa_wichuraiana	Rw5G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	976
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	372
AciI	CCGC	6 cut(s)	177, 198, 205, 251, 254, 370
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	3 cut(s)	374, 592, 857
AfiI	CCNNNNNNNGG	3 cut(s)	204, 423, 578
AgsI	TTSAA	6 cut(s)	49, 271, 661, 712, 952, 1234
AjnI	CCWGG	2 cut(s)	363, 800
AluBI	AGCT	7 cut(s)	45, 130, 189, 219, 314, 1109, 1144
AluI	AGCT	7 cut(s)	45, 130, 189, 219, 314, 1109, 1144
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	962
AoxI	GGCC	3 cut(s)	71, 1164, 1199
ApeKI	GCWGC	4 cut(s)	189, 293, 998, 1010
ArsI	GACNNNNNNTTYG	4 cut(s)	338, 370, 748, 780
Asp718I	GGTACC	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	874, 916
AspS9I	GGNCC	2 cut(s)	29, 426
AsuHPI	GGTGA	1 cut(s)	398
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	29, 426
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BalI	TGGCCA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	316
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	4 cut(s)	176, 280, 985, 997
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	365, 802
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	962
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	4 cut(s)	12, 55, 294, 432
BfoI	RGCGCY	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 999, 1011
BlpI	GCTNAGC	2 cut(s)	1110, 1140
BlsI	GCNGC	7 cut(s)	178, 191, 207, 255, 295, 1000, 1012
Bme1390I	CCNGG	2 cut(s)	365, 802
Bme18I	GGWCC	2 cut(s)	29, 426
BmgT120I	GGNCC	2 cut(s)	29, 426
BmiI	GGNNCC	2 cut(s)	31, 374
BmrFI	CCNGG	2 cut(s)	365, 802
BmsI	GCATC	3 cut(s)	403, 799, 997
BmtI	GCTAGC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	163
Bpu1102I	GCTNAGC	2 cut(s)	1110, 1140
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	364, 1056
BsaWI	WCCGGW	2 cut(s)	375, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 423, 578
Bse118I	RCCGGY	1 cut(s)	868
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	904
BseBI	CCWGG	2 cut(s)	365, 802
BseDI	CCNNGG	2 cut(s)	364, 1056
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	204, 423, 578
BseMI	GCAATG	1 cut(s)	904
BseMII	CTCAG	4 cut(s)	176, 206, 476, 1131
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	450, 980
BseXI	GCAGC	4 cut(s)	176, 280, 985, 997
BshFI	GGCC	3 cut(s)	73, 1166, 1201
BshNI	GGYRCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	3 cut(s)	376, 443, 869
BslFI	GGGAC	2 cut(s)	15, 889
BslI	CCNNNNNNNGG	3 cut(s)	204, 423, 578
BsmAI	GTCTC	1 cut(s)	962
BsmBI	CGTCTC	1 cut(s)	962
BsmFI	GGGAC	2 cut(s)	15, 889
BsnI	GGCC	3 cut(s)	73, 1166, 1201
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	1 cut(s)	51
Bsp1720I	GCTNAGC	2 cut(s)	1110, 1140
BspACI	CCGC	6 cut(s)	177, 198, 205, 251, 254, 370
BspANI	GGCC	3 cut(s)	73, 1166, 1201
BspCNI	CTCAG	4 cut(s)	177, 207, 475, 1132
BspHI	TCATGA	2 cut(s)	691, 1003
BspLI	GGNNCC	2 cut(s)	31, 374
BspMAI	CTGCAG	3 cut(s)	59, 298, 436
BspOI	GCTAGC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	1 cut(s)	868
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	2 cut(s)	364, 1056
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	1056
Bst2UI	CCWGG	2 cut(s)	365, 802
Bst4CI	ACNGT	4 cut(s)	16, 350, 647, 957
Bst6I	CTCTTC	4 cut(s)	152, 603, 656, 1033
BstAUI	TGTACA	1 cut(s)	855
BstC8I	GCNNGC	6 cut(s)	59, 361, 436, 1037, 1041, 1053
BstDEI	CTNAG	5 cut(s)	185, 215, 462, 1110, 1140
BstF5I	GGATG	1 cut(s)	114
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	2 cut(s)	874, 916
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	962
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 1007, 1150, 1172
BstNI	CCWGG	2 cut(s)	365, 802
BstNSI	RCATGY	1 cut(s)	1039
BstSCI	CCNGG	2 cut(s)	363, 800
BstSFI	CTRYAG	4 cut(s)	12, 55, 294, 432
BstV1I	GCAGC	4 cut(s)	176, 280, 985, 997
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	73, 1166, 1201
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	270, 652
Cac8I	GCNNGC	6 cut(s)	59, 361, 436, 1037, 1041, 1053
CciI	TCATGA	2 cut(s)	691, 1003
CfoI	GCGC	2 cut(s)	874, 916
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	2 cut(s)	29, 426
Csp6I	GTAC	3 cut(s)	373, 591, 856
CviAII	CATG	6 cut(s)	410, 671, 692, 1004, 1036, 1184
CviQI	GTAC	3 cut(s)	373, 591, 856
DdeI	CTNAG	5 cut(s)	185, 215, 462, 1110, 1140
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DrdI	GACNNNNNNGTC	1 cut(s)	976
DseDI	GACNNNNNNGTC	1 cut(s)	976
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	4 cut(s)	152, 603, 656, 1033
EarI	CTCTTC	4 cut(s)	152, 603, 656, 1033
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	1056
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	29, 426
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	363, 800
EcoT14I	CCWWGG	1 cut(s)	1056
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	1056
Esp3I	CGTCTC	1 cut(s)	962
FaeI	CATG	6 cut(s)	413, 674, 695, 1007, 1039, 1187
FaqI	GGGAC	2 cut(s)	15, 889
FatI	CATG	6 cut(s)	409, 670, 691, 1003, 1035, 1183
Fnu4HI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 999, 1011
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 999, 1011
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	2 cut(s)	873, 915
GluI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 999, 1011
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	3 cut(s)	73, 1166, 1201
HapII	CCGG	3 cut(s)	376, 443, 869
HhaI	GCGC	2 cut(s)	874, 916
Hin1II	CATG	6 cut(s)	413, 674, 695, 1007, 1039, 1187
Hin6I	GCGC	2 cut(s)	872, 914
HinP1I	GCGC	2 cut(s)	872, 914
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HinfI	GANTC	4 cut(s)	241, 568, 1103, 1237
HpaII	CCGG	3 cut(s)	376, 443, 869
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	866
Hpy188I	TCNGA	7 cut(s)	186, 216, 492, 573, 607, 1102, 1225
Hpy188III	TCNNGA	7 cut(s)	49, 232, 344, 513, 692, 1004, 1234
Hpy8I	GTNNAC	1 cut(s)	866
HpyAV	CCTTC	4 cut(s)	128, 319, 390, 516
HpyCH4III	ACNGT	4 cut(s)	16, 350, 647, 957
HpyCH4V	TGCA	9 cut(s)	57, 296, 434, 677, 790, 897, 927, 1039, 1153
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 1007, 1150, 1172
HpyF3I	CTNAG	5 cut(s)	185, 215, 462, 1110, 1140
Hsp92II	CATG	6 cut(s)	413, 674, 695, 1007, 1039, 1187
HspAI	GCGC	2 cut(s)	872, 914
KpnI	GGTACC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	311, 456
Lsp1109I	GCAGC	4 cut(s)	176, 280, 985, 997
LweI	GCATC	3 cut(s)	403, 799, 997
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	5 cut(s)	16, 350, 617, 779, 1067
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	9 cut(s)	103, 139, 163, 247, 250, 577, 620, 673, 1020
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	2 cut(s)	849, 1044
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	1112
MmeI	TCCRAC	1 cut(s)	525
Mox20I	TGGCCA	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1158
Msp20I	TGGCCA	1 cut(s)	73
MspI	CCGG	3 cut(s)	376, 443, 869
MspR9I	CCNGG	2 cut(s)	365, 802
MvaI	CCWGG	2 cut(s)	365, 802
MwoI	GCNNNNNNNGC	4 cut(s)	259, 1007, 1150, 1172
NdeII	GATC	1 cut(s)	51
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	6 cut(s)	413, 674, 695, 1007, 1039, 1187
NlaIV	GGNNCC	2 cut(s)	31, 374
NmeAIII	GCCGAG	1 cut(s)	1192
NmuCI	GTSAC	1 cut(s)	1067
NspI	RCATGY	1 cut(s)	1039
PaeI	GCATGC	1 cut(s)	1039
PagI	TCATGA	2 cut(s)	691, 1003
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 764
PfeI	GAWTC	3 cut(s)	241, 568, 1237
PkrI	GCNGC	7 cut(s)	178, 191, 207, 255, 295, 1000, 1012
PleI	GAGTC	1 cut(s)	1111
PpsI	GAGTC	1 cut(s)	1111
PpuMI	RGGWCCY	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	363, 800
PspGI	CCWGG	2 cut(s)	363, 800
PspN4I	GGNNCC	2 cut(s)	31, 374
PspPI	GGNCC	2 cut(s)	29, 426
PspPPI	RGGWCCY	1 cut(s)	426
PstI	CTGCAG	3 cut(s)	59, 298, 436
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	3 cut(s)	374, 592, 857
RsaNI	GTAC	3 cut(s)	373, 591, 856
RseI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1158
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 999, 1011
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	2 cut(s)	29, 426
SchI	GAGTC	1 cut(s)	1112
ScrFI	CCNGG	2 cut(s)	365, 802
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	3 cut(s)	403, 799, 997
SfcI	CTRYAG	4 cut(s)	12, 55, 294, 432
SinI	GGWCC	2 cut(s)	29, 426
SmiMI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1158
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	1039
Sse9I	AATT	2 cut(s)	849, 1044
SsiI	CCGC	6 cut(s)	177, 198, 205, 251, 254, 370
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	363, 800
StyI	CCWWGG	1 cut(s)	1056
TaaI	ACNGT	4 cut(s)	16, 350, 647, 957
TaqI	TCGA	2 cut(s)	231, 706
TasI	AATT	2 cut(s)	849, 1044
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	3 cut(s)	179, 208, 256
TfiI	GAWTC	3 cut(s)	241, 568, 1237
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	270, 652
TseFI	GTSAC	1 cut(s)	1067
TseI	GCWGC	4 cut(s)	189, 293, 998, 1010
Tsp45I	GTSAC	1 cut(s)	1067
TspDTI	ATGAA	3 cut(s)	103, 140, 1002
TspGWI	ACGGA	2 cut(s)	443, 608
TspRI	CASTG	2 cut(s)	270, 652
VpaK11BI	GGWCC	2 cut(s)	29, 426
XceI	RCATGY	1 cut(s)	1039
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1028
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.