Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000776.1

Orthogroup ID

OG0012540

Physical Location & Seq

Genomic Coordinates Reverse (-)

363602 .. 364894

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000776.1_g000072.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgacgaaatctacagttacccaaaatggtcccaatccacagagcttcaagatctgcaggctctatttctggccacatttggcaacacccacaaaccctctcaacgatttcttcatccttccaatgaagctctctgttcgcccactcttcagcctcctgctactcattgtcttcgccgccactctgagctgccgaaccgccgtgcggcacagtctgagcttgattgagttcgagaagaagatactcgttccgccgccgaagccagtgttcaatgctactctgctgaaatacgctgcagacgatgtgggtggagctcaagccaagaaggaagtagagcaacttctggacggtaactttgctagtctggggcggtaccggagtttcgcaacttggagaaggtttaatcatcatgatgccagagcaaggacctctgcaggctatccggtaatgctccgttctcctcagttctatcgttattggttagagtttcggagattgttgagtgaatggtcaagaaacagaaggtttcagcctgatattatgttggatttggttagacttgtgaagaatccgattgatgggaaaaatggtacggagggaagttcagaagagaagcgttactcgtcttgtgctgtggttgggaacagtgggattttgttgaagagtaatcatggtgcattgattgatagtcatgaggtagttattcgattgaacaatgcgaggatacagggctttttgggaaaagttgggtcaaagacgaacatttcgtttgtaaatagtaacattttgcatctttgtgccaggagaaatggttgtttttgccacccttatggacagaatgtgcctataattatgtacatttgtcaaccggcacatttctttgattacgcaatatgcaatgtgtcccataaagcgcctttgcttgtgactgatcttcggttggatgtgctgagtgcaaggatagtgaagtattattcgttgaaacggtttggggaggagacggggaagtcatttgatgaatggggggctgctcatgatgctgctatgttccattactcttctggcatgcaagcaattatgcttgccttggggatttgtgacaaagttagtatatttggctttgggaagtcagagtcagctaagcaccattaccatacaaatcaaaaggctgagcttcggttgcacgattatgaggccgagtatgctttctaccatgatttagtggagaggccacaggtaataccattcttttcagaaaagttcaagattcctcctgtggttatatatcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001665 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0006464 GO:0006486 GO:0006487 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008373 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009311 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031090 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0097503 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990743

KEGG Pathways

Metabolic & Signaling

ko00512 ko00533 ko00603 ko00604 ko01100 map00512 map00533 map00603 map00604 map01100

Pfam Domains

Protein Families

Glyco_transf_29

Protein Analysis

430

Amino Acids

49.0

Weight (kDa)

9.44

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08280
fragaria_vesca	FvH4_3g24660 FvH4_3g24660 FvH4_3g24660
malus_domestica	MD03G1142400.v1.1 MD11G1162900.v1.1
prunus_persica	Prupe.6G127500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0044221 RchiOBHm_Chr6g0296901
rosa_laevigata	RLG00000011025 RLG00000034256
rosa_multiflora	Rmu_sc0000776.1_g000072
rosa_roxburghii	Rroxscaffold_1G00036810
rosa_rugosa	Rorug05G0212600
rosa_samantha	Rh5AG296700 Rh5BG304200 Rh5CG331200 Rh5DG313000
rosa_wichuraiana	Rw5G027480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1006
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	372
AciI	CCGC	6 cut(s)	177, 198, 205, 251, 254, 370
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	3 cut(s)	374, 592, 857
AfiI	CCNNNNNNNGG	3 cut(s)	204, 423, 578
AgsI	TTSAA	6 cut(s)	49, 271, 661, 712, 982, 1264
AjnI	CCWGG	1 cut(s)	800
AluBI	AGCT	7 cut(s)	45, 130, 189, 219, 314, 1139, 1174
AluI	AGCT	7 cut(s)	45, 130, 189, 219, 314, 1139, 1174
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	992
AoxI	GGCC	3 cut(s)	71, 1194, 1229
ApeKI	GCWGC	4 cut(s)	189, 293, 1028, 1040
ArsI	GACNNNNNNTTYG	4 cut(s)	338, 370, 748, 780
Asp718I	GGTACC	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	2 cut(s)	29, 426
AvaII	GGWCC	2 cut(s)	29, 426
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BalI	TGGCCA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	316
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	4 cut(s)	176, 280, 1015, 1027
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	802
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	992
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	4 cut(s)	12, 55, 294, 432
BfoI	RGCGCY	1 cut(s)	917
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 1029, 1041
BlpI	GCTNAGC	2 cut(s)	1140, 1170
BlsI	GCNGC	7 cut(s)	178, 191, 207, 255, 295, 1030, 1042
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	2 cut(s)	29, 426
BmgT120I	GGNCC	2 cut(s)	29, 426
BmiI	GGNNCC	2 cut(s)	31, 374
BmrFI	CCNGG	1 cut(s)	802
BmsI	GCATC	3 cut(s)	403, 799, 1027
BpiI	GAAGAC	1 cut(s)	163
Bpu1102I	GCTNAGC	2 cut(s)	1140, 1170
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	1086
BsaWI	WCCGGW	2 cut(s)	375, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 423, 578
Bse118I	RCCGGY	1 cut(s)	868
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	904
BseBI	CCWGG	1 cut(s)	802
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	2 cut(s)	114, 949
BseLI	CCNNNNNNNGG	3 cut(s)	204, 423, 578
BseMI	GCAATG	1 cut(s)	904
BseMII	CTCAG	5 cut(s)	176, 206, 476, 941, 1161
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	450, 1010
BseXI	GCAGC	4 cut(s)	176, 280, 1015, 1027
BshFI	GGCC	3 cut(s)	73, 1196, 1231
BshNI	GGYRCC	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	3 cut(s)	376, 443, 869
BslFI	GGGAC	2 cut(s)	15, 889
BslI	CCNNNNNNNGG	3 cut(s)	204, 423, 578
BsmAI	GTCTC	1 cut(s)	992
BsmBI	CGTCTC	1 cut(s)	992
BsmFI	GGGAC	2 cut(s)	15, 889
BsnI	GGCC	3 cut(s)	73, 1196, 1231
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	2 cut(s)	51, 931
Bsp1720I	GCTNAGC	2 cut(s)	1140, 1170
BspACI	CCGC	6 cut(s)	177, 198, 205, 251, 254, 370
BspANI	GGCC	3 cut(s)	73, 1196, 1231
BspCNI	CTCAG	5 cut(s)	177, 207, 475, 942, 1162
BspHI	TCATGA	3 cut(s)	409, 691, 1033
BspLI	GGNNCC	2 cut(s)	31, 374
BspMAI	CTGCAG	3 cut(s)	59, 298, 436
BspT107I	GGYRCC	1 cut(s)	372
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	1 cut(s)	868
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	1 cut(s)	1086
BssMI	GATC	2 cut(s)	51, 931
BssT1I	CCWWGG	1 cut(s)	1086
Bst2UI	CCWGG	1 cut(s)	802
Bst4CI	ACNGT	5 cut(s)	16, 212, 350, 647, 987
Bst6I	CTCTTC	4 cut(s)	152, 603, 656, 1063
BstAUI	TGTACA	1 cut(s)	855
BstC8I	GCNNGC	5 cut(s)	59, 436, 1067, 1071, 1083
BstDEI	CTNAG	6 cut(s)	185, 215, 462, 950, 1140, 1170
BstF5I	GGATG	2 cut(s)	114, 949
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	2 cut(s)	54, 934
BstMAI	GTCTC	1 cut(s)	992
BstMBI	GATC	2 cut(s)	51, 931
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 1037, 1180, 1202
BstNI	CCWGG	1 cut(s)	802
BstNSI	RCATGY	1 cut(s)	1069
BstSCI	CCNGG	1 cut(s)	800
BstSFI	CTRYAG	4 cut(s)	12, 55, 294, 432
BstV1I	GCAGC	4 cut(s)	176, 280, 1015, 1027
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	73, 1196, 1231
BtsCI	GGATG	2 cut(s)	114, 949
BtsIMutI	CAGTG	2 cut(s)	270, 652
Cac8I	GCNNGC	5 cut(s)	59, 436, 1067, 1071, 1083
CciI	TCATGA	3 cut(s)	409, 691, 1033
CfoI	GCGC	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	2 cut(s)	29, 426
Csp6I	GTAC	3 cut(s)	373, 591, 856
CviAII	CATG	6 cut(s)	410, 671, 692, 1034, 1066, 1214
CviQI	GTAC	3 cut(s)	373, 591, 856
DdeI	CTNAG	6 cut(s)	185, 215, 462, 950, 1140, 1170
DpnI	GATC	2 cut(s)	53, 933
DpnII	GATC	2 cut(s)	51, 931
DrdI	GACNNNNNNGTC	1 cut(s)	1006
DseDI	GACNNNNNNGTC	1 cut(s)	1006
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	4 cut(s)	152, 603, 656, 1063
EarI	CTCTTC	4 cut(s)	152, 603, 656, 1063
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	1086
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	29, 426
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	1086
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	1086
Esp3I	CGTCTC	1 cut(s)	992
FaeI	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
FaqI	GGGAC	2 cut(s)	15, 889
FatI	CATG	6 cut(s)	409, 670, 691, 1033, 1065, 1213
Fnu4HI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 1029, 1041
FokI	GGATG	2 cut(s)	101, 956
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 1029, 1041
FspBI	CTAG	1 cut(s)	360
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 1029, 1041
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	3 cut(s)	73, 1196, 1231
HapII	CCGG	3 cut(s)	376, 443, 869
HhaI	GCGC	1 cut(s)	916
Hin1II	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HinfI	GANTC	3 cut(s)	568, 1133, 1267
HpaII	CCGG	3 cut(s)	376, 443, 869
Hpy166II	GTNNAC	1 cut(s)	866
Hpy188I	TCNGA	7 cut(s)	186, 216, 492, 573, 607, 1132, 1255
Hpy188III	TCNNGA	8 cut(s)	49, 232, 344, 410, 513, 692, 1034, 1264
Hpy8I	GTNNAC	1 cut(s)	866
HpyAV	CCTTC	4 cut(s)	128, 319, 390, 516
HpyCH4III	ACNGT	5 cut(s)	16, 212, 350, 647, 987
HpyCH4V	TGCA	9 cut(s)	57, 296, 434, 677, 790, 897, 956, 1069, 1183
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 1037, 1180, 1202
HpyF3I	CTNAG	6 cut(s)	185, 215, 462, 950, 1140, 1170
Hsp92II	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
HspAI	GCGC	1 cut(s)	914
KpnI	GGTACC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	51, 931
LmnI	GCTCC	2 cut(s)	311, 456
Lsp1109I	GCAGC	4 cut(s)	176, 280, 1015, 1027
LweI	GCATC	3 cut(s)	403, 799, 1027
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	6 cut(s)	16, 350, 617, 779, 925, 1097
MalI	GATC	2 cut(s)	53, 933
MboI	GATC	2 cut(s)	51, 931
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	2 cut(s)	849, 1074
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	1142
MmeI	TCCRAC	2 cut(s)	525, 921
Mox20I	TGGCCA	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1188
Msp20I	TGGCCA	1 cut(s)	73
MspI	CCGG	3 cut(s)	376, 443, 869
MspR9I	CCNGG	1 cut(s)	802
MvaI	CCWGG	1 cut(s)	802
MwoI	GCNNNNNNNGC	4 cut(s)	259, 1037, 1180, 1202
NdeII	GATC	2 cut(s)	51, 931
NlaIII	CATG	6 cut(s)	413, 674, 695, 1037, 1069, 1217
NlaIV	GGNNCC	2 cut(s)	31, 374
NmeAIII	GCCGAG	1 cut(s)	1222
NmuCI	GTSAC	2 cut(s)	925, 1097
NspI	RCATGY	1 cut(s)	1069
PaeI	GCATGC	1 cut(s)	1069
PagI	TCATGA	3 cut(s)	409, 691, 1033
PcsI	WCGNNNNNNNCGW	2 cut(s)	297, 764
PfeI	GAWTC	2 cut(s)	568, 1267
PkrI	GCNGC	7 cut(s)	178, 191, 207, 255, 295, 1030, 1042
PleI	GAGTC	1 cut(s)	1141
PpsI	GAGTC	1 cut(s)	1141
PpuMI	RGGWCCY	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	800
PspN4I	GGNNCC	2 cut(s)	31, 374
PspPI	GGNCC	2 cut(s)	29, 426
PspPPI	RGGWCCY	1 cut(s)	426
PstI	CTGCAG	3 cut(s)	59, 298, 436
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	3 cut(s)	374, 592, 857
RsaNI	GTAC	3 cut(s)	373, 591, 856
RseI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1188
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	7 cut(s)	177, 190, 206, 254, 294, 1029, 1041
Sau3AI	GATC	2 cut(s)	51, 931
Sau96I	GGNCC	2 cut(s)	29, 426
SchI	GAGTC	1 cut(s)	1142
ScrFI	CCNGG	1 cut(s)	802
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	3 cut(s)	403, 799, 1027
SfcI	CTRYAG	4 cut(s)	12, 55, 294, 432
SinI	GGWCC	2 cut(s)	29, 426
SmiMI	CAYNNNNRTG	4 cut(s)	411, 795, 828, 1188
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	1069
Sse9I	AATT	2 cut(s)	849, 1074
SsiI	CCGC	6 cut(s)	177, 198, 205, 251, 254, 370
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	800
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	5 cut(s)	16, 212, 350, 647, 987
TaqI	TCGA	2 cut(s)	231, 706
TasI	AATT	2 cut(s)	849, 1074
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	3 cut(s)	179, 208, 256
TfiI	GAWTC	2 cut(s)	568, 1267
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	270, 652
TseFI	GTSAC	2 cut(s)	925, 1097
TseI	GCWGC	4 cut(s)	189, 293, 1028, 1040
Tsp45I	GTSAC	2 cut(s)	925, 1097
TspDTI	ATGAA	3 cut(s)	103, 140, 1032
TspGWI	ACGGA	2 cut(s)	443, 608
TspRI	CASTG	2 cut(s)	270, 652
VpaK11BI	GGWCC	2 cut(s)	29, 426
XceI	RCATGY	1 cut(s)	1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.