MD03G1142400.v1.1

Belongs to the glycosyltransferase 29 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
15155780 .. 15157063
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1142400.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGCCAAAATCTGTAGAAAACCAGGATGAAGCCGACACGCAGAGCATCAAGATCTGCACTCCCATCTATTTCTGGCCGCATTTAGCGACACCCATCAACCCTTTCAACGATCTCTTCACCCTTCCCATGAAGCGCTCTGTCCGCCCATTATTCAGCATTCTCCTCCTCATTGTGTTCGCCGCCACGCTGAGCTGCCGGAACGCTGTCCGCCATAGCTTTGAGCTCGAGAATAAGGTGCTAATCCAACCGTCGAGGCCGGTGTTCAATGCCACTCTGCTCAGATTCGCCGCCGTTGATGCAGGTGAAGCTCAAGCCAAGAAGGAGATTGAGCAGCTGTTGGAGGGTAACTTTGCCAGTCTCGGAAAGTACCGGACTTTCGCTTCGTGGAGGCGATTTAATCACCATGATATCAGAGCAAAGACGTCTACTGGATTGCCGGTAATGCTCCGCTCTCCCCGATTCTATCGTTATTGGTTGGATTTTAGGAGGGTTTTGAGTGATTGGTCGAGAAACAAACGGTTTCATGGTGATGTTATGTTGGATTTAGTTGGACTTGTTAGGAATCCCATTGATAGGCACAATGGCTTAGTGGGTTCCGAGCAACGGCGCTATTCGTCGTGTGCGGTTGTCGGAAACAGTGGGATTTTGTTGAAGAGTAATCATGGAGCTCTCATTGATAGTCATGAGGTTGTCATTCGATTGAACAACGCGAGGATCCAGAGTTTTTCGGAGAAAGTTGGCTCGAAAACCAGCATTTCGTTTGTAAATAGTAACATTTTGCATCTTTGTGCTCGGAGAGATGGTTGTTTTTGCCACCCTTATGGACTGAATGTGCCTATGATTATGTACATTTGTCAACCGGTGCATCTCTTCGATTACACGATATGCAACATGTCCCACAAAGCGCCGTTGCTCGTGACTGATCCTCGGTTTGATGTGTTGTGCGCGAGGATTGTGAAGTATTATTCGTTGAAGCGGTTTGTGGAGGAGACGGGGAAGTCGTTTGAGGAGTGGGAGGCAGTTCATGATGGTTCCATGTTTCATTACTCTTCCGGTATGCAGGCTATTATGCTTGCTTTGGGAATTTGTGACAAAGTTAGTGTTTTTGGATTTGGGAAGTCGGATTCAGCGAAGCATCATTATCACACGAATCAGAAGGCCGAGCTTCGATTGCACGATTATCCAGCGGAGTACGCGTTCTATCGCGATTTGGCTGAGAGACCGCAGGTAATACCGTTCCTTTCGGACAAGTTCAACATTCCTCCTGTGGTTCTATATCAATGA

Protein Analysis

428

Amino Acids

48.95

Weight (kDa)

9.19

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 195 - 406 2.8e-38 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012540)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
AasI GACNNNNNNGTC 1 cut(s) 997
AatII GACGTC 1 cut(s) 425
Acc36I ACCTGC 2 cut(s) 290, 1216
AccBSI CCGCTC 1 cut(s) 450
AccI GTMKAC 1 cut(s) 425
AccII CGCG 4 cut(s) 710, 947, 1196, 1206
AclWI GGATC 3 cut(s) 709, 722, 917
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 1083
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 3 cut(s) 368, 848, 1193
AfeI AGCGCT 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 573, 603
AflIII ACRYGT 2 cut(s) 891, 1194
AgeI ACCGGT 1 cut(s) 859
AgsI TTSAA 6 cut(s) 106, 265, 652, 703, 973, 1255
AjnI CCWGG 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 1181, 1213
AluBI AGCT 7 cut(s) 192, 216, 223, 308, 334, 668, 1165
AluI AGCT 7 cut(s) 192, 216, 223, 308, 334, 668, 1165
Alw21I GWGCWC 3 cut(s) 225, 670, 793
Alw26I GTCTC 3 cut(s) 362, 983, 1213
AlwI GGATC 3 cut(s) 709, 722, 917
Ama87I CYCGRG 1 cut(s) 224
Aor51HI AGCGCT 1 cut(s) 134
AoxI GGCC 3 cut(s) 74, 254, 1158
ApeKI GCWGC 2 cut(s) 192, 331
ApoI RAATTY 1 cut(s) 1083
ArsI GACNNNNNNTTYG 2 cut(s) 364, 396
AsiGI ACCGGT 1 cut(s) 859
AspLEI GCGC 4 cut(s) 135, 609, 907, 947
AsuHPI GGTGA 4 cut(s) 109, 314, 392, 539
AvaI CYCGRG 1 cut(s) 224
BamHI GGATCC 1 cut(s) 714
BanII GRGCYC 2 cut(s) 225, 670
BauI CACGAG 1 cut(s) 914
Bbv12I GWGCWC 3 cut(s) 225, 670, 793
BbvI GCAGC 2 cut(s) 179, 343
BccI CCATC 4 cut(s) 71, 101, 794, 1022
BceAI ACGGC 3 cut(s) 275, 620, 892
BciT130I CCWGG 1 cut(s) 23
BcoDI GTCTC 3 cut(s) 362, 983, 1213
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 3 cut(s) 136, 610, 908
BfuAI ACCTGC 2 cut(s) 290, 1216
BglII AGATCT 1 cut(s) 51
BisI GCNGC 5 cut(s) 77, 180, 193, 288, 332
BlpI GCTNAGC 1 cut(s) 188
BlsI GCNGC 5 cut(s) 78, 181, 194, 289, 333
Bme1390I CCNGG 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 224
BmiI GGNNCC 3 cut(s) 595, 716, 1033
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 5 cut(s) 54, 286, 790, 874, 1144
Bpu1102I GCTNAGC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 1213
BsaJI CCNNGG 1 cut(s) 926
BsaWI WCCGGW 3 cut(s) 369, 859, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 787, 817, 1181, 1211
Bsc4I CCNNNNNNNGG 2 cut(s) 573, 603
Bse118I RCCGGY 3 cut(s) 256, 436, 859
Bse1I ACTGG 2 cut(s) 354, 433
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 926
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 573, 603
BseMII CTCAG 3 cut(s) 179, 292, 1206
BseNI ACTGG 2 cut(s) 354, 433
BseRI GAGGAG 4 cut(s) 152, 155, 1001, 1022
BseXI GCAGC 2 cut(s) 179, 343
BsgI GTGCAG 1 cut(s) 40
Bsh1236I CGCG 4 cut(s) 710, 947, 1196, 1206
BshFI GGCC 3 cut(s) 76, 256, 1160
BshTI ACCGGT 1 cut(s) 859
BsiHKAI GWGCWC 3 cut(s) 225, 670, 793
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 6 cut(s) 196, 257, 370, 437, 860, 1053
BslFI GGGAC 1 cut(s) 880
BslI CCNNNNNNNGG 2 cut(s) 573, 603
BsmAI GTCTC 3 cut(s) 362, 983, 1213
BsmBI CGTCTC 1 cut(s) 983
BsmFI GGGAC 1 cut(s) 880
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 3 cut(s) 76, 256, 1160
Bso31I GGTCTC 1 cut(s) 1213
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 225, 670, 793
Bsp1407I TGTACA 1 cut(s) 846
Bsp143I GATC 4 cut(s) 51, 109, 714, 922
Bsp1720I GCTNAGC 1 cut(s) 188
Bsp68I TCGCGA 1 cut(s) 1206
BspANI GGCC 3 cut(s) 76, 256, 1160
BspCNI CTCAG 3 cut(s) 180, 291, 1207
BspFNI CGCG 4 cut(s) 710, 947, 1196, 1206
BspHI TCATGA 2 cut(s) 682, 1024
BspLI GGNNCC 3 cut(s) 595, 716, 1033
BspMI ACCTGC 2 cut(s) 290, 1216
BspPI GGATC 3 cut(s) 709, 722, 917
BspTNI GGTCTC 1 cut(s) 1213
BsrBI CCGCTC 1 cut(s) 450
BsrFI RCCGGY 3 cut(s) 256, 436, 859
BsrGI TGTACA 1 cut(s) 846
BsrI ACTGG 2 cut(s) 354, 433
BssAI RCCGGY 3 cut(s) 256, 436, 859
BssECI CCNNGG 1 cut(s) 926
BssMI GATC 4 cut(s) 51, 109, 714, 922
BssNI GRCGYC 1 cut(s) 422
BssSI CACGAG 1 cut(s) 914
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 4 cut(s) 249, 519, 638, 1236
Bst6I CTCTTC 4 cut(s) 119, 647, 875, 1054
BstACI GRCGYC 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 846
BstC8I GCNNGC 2 cut(s) 1062, 1074
BstDEI CTNAG 4 cut(s) 188, 278, 586, 1215
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 4 cut(s) 710, 947, 1196, 1206
BstH2I RGCGCY 3 cut(s) 136, 610, 908
BstHHI GCGC 4 cut(s) 135, 609, 907, 947
BstKTI GATC 4 cut(s) 54, 112, 717, 925
BstMAI GTCTC 3 cut(s) 362, 983, 1213
BstMBI GATC 4 cut(s) 51, 109, 714, 922
BstMWI GCNNNNNNNGC 6 cut(s) 141, 296, 305, 442, 1171, 1193
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 4 cut(s) 710, 947, 1196, 1206
BstV1I GCAGC 2 cut(s) 179, 343
BstX2I RGATCY 2 cut(s) 51, 714
BstXI CCANNNNNNTGG 1 cut(s) 821
BstYI RGATCY 2 cut(s) 51, 714
BsuRI GGCC 3 cut(s) 76, 256, 1160
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 643
BtuMI TCGCGA 1 cut(s) 1206
BveI ACCTGC 2 cut(s) 290, 1216
Cac8I GCNNGC 2 cut(s) 1062, 1074
CciI TCATGA 2 cut(s) 682, 1024
CfoI GCGC 4 cut(s) 135, 609, 907, 947
Cfr10I RCCGGY 3 cut(s) 256, 436, 859
Csp6I GTAC 3 cut(s) 367, 847, 1192
CspAI ACCGGT 1 cut(s) 859
CviAII CATG 8 cut(s) 127, 404, 524, 662, 683, 892, 1025, 1036
CviQI GTAC 3 cut(s) 367, 847, 1192
DdeI CTNAG 4 cut(s) 188, 278, 586, 1215
DpnI GATC 4 cut(s) 53, 111, 716, 924
DpnII GATC 4 cut(s) 51, 109, 714, 922
DrdI GACNNNNNNGTC 1 cut(s) 997
DseDI GACNNNNNNGTC 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 4 cut(s) 119, 647, 875, 1054
EarI CTCTTC 4 cut(s) 119, 647, 875, 1054
EciI GGCGGA 2 cut(s) 131, 197
Ecl136II GAGCTC 2 cut(s) 223, 668
Eco24I GRGCYC 2 cut(s) 225, 670
Eco31I GGTCTC 1 cut(s) 1213
Eco32I GATATC 1 cut(s) 409
Eco47III AGCGCT 1 cut(s) 134
Eco53kI GAGCTC 2 cut(s) 223, 668
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 2 cut(s) 223, 668
EcoRII CCWGG 1 cut(s) 21
EcoRV GATATC 1 cut(s) 409
EcoT38I GRGCYC 2 cut(s) 225, 670
Esp3I CGTCTC 1 cut(s) 983
FaeI CATG 8 cut(s) 130, 407, 527, 665, 686, 895, 1028, 1039
FaqI GGGAC 1 cut(s) 880
FatI CATG 8 cut(s) 126, 403, 523, 661, 682, 891, 1024, 1035
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 5 cut(s) 77, 180, 193, 288, 332
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 2 cut(s) 225, 670
Fsp4HI GCNGC 5 cut(s) 77, 180, 193, 288, 332
GlaI GCGC 4 cut(s) 134, 608, 906, 946
GluI GCNGC 5 cut(s) 77, 180, 193, 288, 332
HaeII RGCGCY 3 cut(s) 136, 610, 908
HaeIII GGCC 3 cut(s) 76, 256, 1160
HapII CCGG 6 cut(s) 196, 257, 370, 437, 860, 1053
HhaI GCGC 4 cut(s) 135, 609, 907, 947
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 8 cut(s) 130, 407, 527, 665, 686, 895, 1028, 1039
Hin6I GCGC 4 cut(s) 133, 607, 905, 945
HinP1I GCGC 4 cut(s) 133, 607, 905, 945
HincII GTYRAC 1 cut(s) 857
HindII GTYRAC 1 cut(s) 857
HinfI GANTC 5 cut(s) 282, 459, 562, 1124, 1150
HpaII CCGG 6 cut(s) 196, 257, 370, 437, 860, 1053
HphI GGTGA 4 cut(s) 109, 314, 392, 539
Hpy166II GTNNAC 2 cut(s) 426, 857
Hpy188III TCNNGA 8 cut(s) 49, 226, 507, 683, 718, 916, 1025, 1205
Hpy8I GTNNAC 2 cut(s) 426, 857
Hpy99I CGWCG 2 cut(s) 253, 619
HpyAV CCTTC 3 cut(s) 131, 313, 1150
HpyCH4III ACNGT 4 cut(s) 249, 519, 638, 1236
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 7 cut(s) 57, 299, 781, 865, 888, 1060, 1174
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 296, 305, 442, 1171, 1193
HpyF3I CTNAG 4 cut(s) 188, 278, 586, 1215
HpySE526I ACGT 1 cut(s) 422
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 8 cut(s) 130, 407, 527, 665, 686, 895, 1028, 1039
HspAI GCGC 4 cut(s) 133, 607, 905, 945
Kzo9I GATC 4 cut(s) 51, 109, 714, 922
LmnI GCTCC 2 cut(s) 450, 665
Lsp1109I GCAGC 2 cut(s) 179, 343
LweI GCATC 5 cut(s) 54, 286, 790, 874, 1144
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 4 cut(s) 344, 770, 916, 1088
MalI GATC 4 cut(s) 53, 111, 716, 924
MbiI CCGCTC 1 cut(s) 450
MboI GATC 4 cut(s) 51, 109, 714, 922
MboII GAAGA 4 cut(s) 106, 664, 862, 1041
MflI RGATCY 2 cut(s) 51, 714
MhlI GDGCHC 3 cut(s) 225, 670, 793
MluCI AATT 1 cut(s) 1083
MluI ACGCGT 1 cut(s) 1194
MmeI TCCRAC 7 cut(s) 268, 318, 456, 519, 529, 610, 1101
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 3 cut(s) 528, 786, 819
MspA1I CMGCKG 2 cut(s) 334, 1187
MspI CCGG 6 cut(s) 196, 257, 370, 437, 860, 1053
MspR9I CCNGG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 4 cut(s) 710, 947, 1196, 1206
MwoI GCNNNNNNNGC 6 cut(s) 141, 296, 305, 442, 1171, 1193
NdeII GATC 4 cut(s) 51, 109, 714, 922
NlaIII CATG 8 cut(s) 130, 407, 527, 665, 686, 895, 1028, 1039
NlaIV GGNNCC 3 cut(s) 595, 716, 1033
NmeAIII GCCGAG 1 cut(s) 1186
NmuCI GTSAC 2 cut(s) 916, 1088
NruI TCGCGA 1 cut(s) 1206
NspI RCATGY 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 224
PagI TCATGA 2 cut(s) 682, 1024
PaqCI CACCTGC 1 cut(s) 290
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 2 cut(s) 998, 1127
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 5 cut(s) 282, 459, 562, 1124, 1150
PinAI ACCGGT 1 cut(s) 859
PkrI GCNGC 5 cut(s) 78, 181, 194, 289, 333
PscI ACATGT 1 cut(s) 891
Psp124BI GAGCTC 2 cut(s) 225, 670
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 595, 716, 1033
PsuI RGATCY 2 cut(s) 51, 714
PvuII CAGCTG 1 cut(s) 334
RruI TCGCGA 1 cut(s) 1206
RsaI GTAC 3 cut(s) 368, 848, 1193
RsaNI GTAC 3 cut(s) 367, 847, 1192
RseI CAYNNNNRTG 3 cut(s) 528, 786, 819
SacI GAGCTC 2 cut(s) 225, 670
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 5 cut(s) 77, 180, 193, 288, 332
Sau3AI GATC 4 cut(s) 51, 109, 714, 922
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 3 cut(s) 225, 670, 793
SfaNI GCATC 5 cut(s) 54, 286, 790, 874, 1144
SfcI CTRYAG 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 224
SmiMI CAYNNNNRTG 3 cut(s) 528, 786, 819
SmlI CTYRAG 2 cut(s) 224, 309
SmoI CTYRAG 2 cut(s) 224, 309
Sse9I AATT 1 cut(s) 1083
SstI GAGCTC 2 cut(s) 225, 670
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 4 cut(s) 249, 519, 638, 1236
TaiI ACGT 1 cut(s) 425
TaqI TCGA 7 cut(s) 225, 251, 506, 697, 743, 873, 1168
TasI AATT 1 cut(s) 1083
TatI WGTACW 1 cut(s) 846
TauI GCSGC 3 cut(s) 79, 182, 290
TfiI GAWTC 5 cut(s) 282, 459, 562, 1124, 1150
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 643
TseFI GTSAC 2 cut(s) 916, 1088
TseI GCWGC 2 cut(s) 192, 331
Tsp45I GTSAC 2 cut(s) 916, 1088
TspDTI ATGAA 5 cut(s) 42, 143, 512, 1013, 1031
TspRI CASTG 1 cut(s) 643
XapI RAATTY 1 cut(s) 1083
XceI RCATGY 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 425
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.