FvH4_3g24660

Belongs to the glycosyltransferase 29 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
17762506 .. 17767117
4612 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24660.t2

Sequence Viewer

Length: 1272 bp
ATGACGAAATCTACAGTGACCCAGAATGGTTCCAACCCACAGAGCTTCAAGATCTGCAGGCTCTACTTCTGGCCACATTTAGCAACACCCACAAACCCTCTCAACGACTTCTTCATCCTCCCAATGAAGCTCTCTGTTCGACCACTCTTCAGCCTCCTCCTCCTCATTGTCTTCGCTGCCACTCTGAGCTGCCGGACCGCAGTCCGGCACAGCCTGAGCTTGATAGAGTTTGAAAAGAAGGCACTCCTTCCGCCGCCGAAGCCGGTGTTCAATGCTACTCTGCTGAGATTCGCTGCTGACGACGTGGGTGGAGCTCAGGCCAAGAAAGAAGTAGAGCAACTTCTGGATGGCAACTTTGCTAGTCTTGGCCGGTACCGGGGTTTCGCTAGTTGGAGAAGGTTTAATCACCATGATGTCAGAGCAAGGACCTCTGCAGGGTATCCGGTAATGCTCCGTTCTCCTCAGTTCTATCGTTATTGGTTGGAGTTTCGGAGATTGTTGAGTGATTGGTCTAGAAACAGGAGGTTTGAGCCTGATGTTATGTTGGATTTGGTTAGACTTGTGAAGGACCCGATTGATGGGAGGAATGGGAGTGTGGGAGGTTCGGAACAGAGGCGTTACGAGTCTTGTGCTGTGGTTGGGAATAGTGGGATTTTGTTGAAGAGTAATCATGGTGCTTTGATTGATAGTCATGAAGTAGTTATTAGATTGAATAATGCGAGGATAGCGAGCTTTGAGGACAAAGTTGGGTCAAAAACGAACATTTCATTTGTAAATAGTAACATTTTGCATCTTTGTGCTAGGAGAAATGGTTGTTTTTGCCACCCTTATGGACAGAATGTGCCTATAATTATGTACATTTGTCAACCGGTGCATTTCTTCGATTACACAATATGCAATGTGTCTCATAAAGCACCTTTGCTCGTGACTGATCTTCGGTTTGATGTGTTGACTGCAAGGATTGTGAAGTATTATTCGTTGAAACGGTTTGGGGAGGAGACGGGGAAGTCATTCGATGAATGGGGGGCTGCTCATGATGCTGCTATGTTCCATTACTCTTCTGGTATGCAAGCAATTATGCTTGCCTTAGGGATTTGTGACAAAGTTAGTGTATTTGGCTTTGGGAAGTCAGAGTCAGCTAAACACCATTACCATACGAATCAGAAGGCTGAGCTTCGATTGCATGACTATGAGGCTGAATATGCTTTCTACCATGATTTAGTGGAGAGACCACAGCCCCTTTTAGTTACGAGGCCCCTGCTGGGTTCTTAG

Protein Analysis

424

Amino Acids

48.11

Weight (kDa)

9.36

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_29 PF00777 180 - 409 4.5e-37 Glycosyltransferase family 29 (sialyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012540)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1006
Acc65I GGTACC 1 cut(s) 372
AccB1I GGYRCC 1 cut(s) 372
AciI CCGC 3 cut(s) 198, 251, 254
AcoI YGGCCR 2 cut(s) 71, 367
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 2 cut(s) 374, 857
AfiI CCNNNNNNNGG 5 cut(s) 204, 376, 435, 578, 1262
AgeI ACCGGT 1 cut(s) 868
AgsI TTSAA 6 cut(s) 49, 233, 271, 661, 712, 982
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 8 cut(s) 45, 130, 189, 219, 314, 732, 1139, 1174
AluI AGCT 8 cut(s) 45, 130, 189, 219, 314, 732, 1139, 1174
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 3 cut(s) 909, 992, 1222
AoxI GGCC 4 cut(s) 71, 318, 367, 1253
ApeKI GCWGC 5 cut(s) 176, 189, 293, 1028, 1040
AsiGI ACCGGT 1 cut(s) 868
Asp700I GAANNNNTTC 1 cut(s) 1010
Asp718I GGTACC 1 cut(s) 372
AspS9I GGNCC 4 cut(s) 195, 426, 568, 1254
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 3 cut(s) 195, 426, 568
AxyI CCTNAGG 1 cut(s) 1087
BaeI ACNNNNGTAYC 2 cut(s) 364, 397
BalI TGGCCA 1 cut(s) 73
BanI GGYRCC 1 cut(s) 372
BanII GRGCYC 1 cut(s) 316
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
BauI CACGAG 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 5 cut(s) 163, 176, 280, 1015, 1027
BccI CCATC 2 cut(s) 341, 572
BcgI CGANNNNNNTGC 3 cut(s) 611, 645, 1240
BciVI GTATCC 1 cut(s) 450
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 3 cut(s) 909, 992, 1222
BfaI CTAG 4 cut(s) 360, 387, 513, 801
BfmI CTRYAG 3 cut(s) 12, 55, 432
BfuI GTATCC 1 cut(s) 450
BglII AGATCT 1 cut(s) 51
BisI GCNGC 6 cut(s) 177, 190, 254, 294, 1029, 1041
BlpI GCTNAGC 1 cut(s) 1170
BlsI GCNGC 6 cut(s) 178, 191, 255, 295, 1030, 1042
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 3 cut(s) 195, 426, 568
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 4 cut(s) 195, 426, 568, 1254
BmiI GGNNCC 4 cut(s) 31, 374, 570, 1256
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 799, 1027
BoxI GACNNNNGTC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 163
Bpu10I CCTNAGC 2 cut(s) 215, 315
Bpu1102I GCTNAGC 1 cut(s) 1170
BpuMI CCSGG 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 1222
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 2 cut(s) 442, 868
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 5 cut(s) 204, 376, 435, 578, 1262
Bse118I RCCGGY 3 cut(s) 262, 369, 868
Bse21I CCTNAGG 1 cut(s) 1087
Bse3DI GCAATG 1 cut(s) 904
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 114, 352
BseLI CCNNNNNNNGG 5 cut(s) 204, 376, 435, 578, 1262
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 6 cut(s) 176, 206, 275, 329, 476, 1161
BseRI GAGGAG 5 cut(s) 146, 149, 152, 450, 1010
BseXI GCAGC 5 cut(s) 163, 176, 280, 1015, 1027
BseYI CCCAGC 1 cut(s) 1261
BshFI GGCC 4 cut(s) 73, 320, 369, 1255
BshNI GGYRCC 1 cut(s) 372
BshTI ACCGGT 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 7 cut(s) 193, 205, 263, 370, 376, 443, 869
BslI CCNNNNNNNGG 5 cut(s) 204, 376, 435, 578, 1262
BsmAI GTCTC 3 cut(s) 909, 992, 1222
BsmBI CGTCTC 1 cut(s) 992
BsnI GGCC 4 cut(s) 73, 320, 369, 1255
Bso31I GGTCTC 1 cut(s) 1222
Bsp1286I GDGCHC 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 2 cut(s) 51, 931
Bsp1720I GCTNAGC 1 cut(s) 1170
BspACI CCGC 3 cut(s) 198, 251, 254
BspANI GGCC 4 cut(s) 73, 320, 369, 1255
BspCNI CTCAG 6 cut(s) 177, 207, 276, 328, 475, 1162
BspHI TCATGA 2 cut(s) 691, 1033
BspLI GGNNCC 4 cut(s) 31, 374, 570, 1256
BspMAI CTGCAG 2 cut(s) 59, 436
BspT107I GGYRCC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 1222
BsrDI GCAATG 1 cut(s) 904
BsrFI RCCGGY 3 cut(s) 262, 369, 868
BsrGI TGTACA 1 cut(s) 855
BssAI RCCGGY 3 cut(s) 262, 369, 868
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 2 cut(s) 51, 931
BssSI CACGAG 1 cut(s) 923
Bst2BI CACGAG 1 cut(s) 923
Bst4CI ACNGT 2 cut(s) 16, 987
Bst6I CTCTTC 3 cut(s) 152, 656, 1063
BstAUI TGTACA 1 cut(s) 855
BstC8I GCNNGC 4 cut(s) 59, 730, 1071, 1083
BstDEI CTNAG 8 cut(s) 185, 215, 284, 315, 462, 1087, 1170, 1269
BstF5I GGATG 2 cut(s) 114, 352
BstKTI GATC 2 cut(s) 54, 934
BstMAI GTCTC 3 cut(s) 909, 992, 1222
BstMBI GATC 2 cut(s) 51, 931
BstMWI GCNNNNNNNGC 5 cut(s) 259, 725, 1037, 1180, 1202
BstPAI GACNNNNGTC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 3 cut(s) 12, 55, 432
BstV1I GCAGC 5 cut(s) 163, 176, 280, 1015, 1027
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 830
BstYI RGATCY 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 1087
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 4 cut(s) 73, 320, 369, 1255
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 114, 352
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 4 cut(s) 59, 730, 1071, 1083
CciI TCATGA 2 cut(s) 691, 1033
Cfr10I RCCGGY 3 cut(s) 262, 369, 868
Cfr13I GGNCC 4 cut(s) 195, 426, 568, 1254
CpoI CGGWCCG 1 cut(s) 195
Csp6I GTAC 2 cut(s) 373, 856
CspAI ACCGGT 1 cut(s) 868
CspI CGGWCCG 1 cut(s) 195
CviAII CATG 6 cut(s) 410, 671, 692, 1034, 1184, 1214
CviQI GTAC 2 cut(s) 373, 856
DdeI CTNAG 8 cut(s) 185, 215, 284, 315, 462, 1087, 1170, 1269
DpnI GATC 2 cut(s) 53, 933
DpnII GATC 2 cut(s) 51, 931
DrdI GACNNNNNNGTC 1 cut(s) 1006
DseDI GACNNNNNNGTC 1 cut(s) 1006
EaeI YGGCCR 2 cut(s) 71, 367
Eam1104I CTCTTC 3 cut(s) 152, 656, 1063
EarI CTCTTC 3 cut(s) 152, 656, 1063
EciI GGCGGA 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 1222
Eco47I GGWCC 3 cut(s) 195, 426, 568
Eco53kI GAGCTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 1087
EcoICRI GAGCTC 1 cut(s) 314
EcoO109I RGGNCCY 3 cut(s) 426, 568, 1254
EcoT38I GRGCYC 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 992
FaeI CATG 6 cut(s) 413, 674, 695, 1037, 1187, 1217
FatI CATG 6 cut(s) 409, 670, 691, 1033, 1183, 1213
Fnu4HI GCNGC 6 cut(s) 177, 190, 254, 294, 1029, 1041
FokI GGATG 2 cut(s) 101, 359
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 6 cut(s) 177, 190, 254, 294, 1029, 1041
FspBI CTAG 4 cut(s) 360, 387, 513, 801
GluI GCNGC 6 cut(s) 177, 190, 254, 294, 1029, 1041
GsaI CCCAGC 1 cut(s) 1265
HaeIII GGCC 4 cut(s) 73, 320, 369, 1255
HapII CCGG 7 cut(s) 193, 205, 263, 370, 376, 443, 869
Hin1II CATG 6 cut(s) 413, 674, 695, 1037, 1187, 1217
HincII GTYRAC 2 cut(s) 866, 951
HindII GTYRAC 2 cut(s) 866, 951
HinfI GANTC 4 cut(s) 288, 623, 1133, 1159
HpaII CCGG 7 cut(s) 193, 205, 263, 370, 376, 443, 869
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 866, 951
Hpy188I TCNGA 6 cut(s) 186, 419, 492, 607, 1132, 1164
Hpy188III TCNNGA 6 cut(s) 49, 344, 513, 692, 925, 1034
Hpy8I GTNNAC 2 cut(s) 866, 951
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 5 cut(s) 232, 257, 390, 559, 1159
HpyCH4III ACNGT 2 cut(s) 16, 987
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 8 cut(s) 57, 434, 790, 874, 897, 956, 1069, 1183
HpyF10VI GCNNNNNNNGC 5 cut(s) 259, 725, 1037, 1180, 1202
HpyF3I CTNAG 8 cut(s) 185, 215, 284, 315, 462, 1087, 1170, 1269
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 6 cut(s) 413, 674, 695, 1037, 1187, 1217
KpnI GGTACC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 51, 931
LmnI GCTCC 2 cut(s) 311, 456
Lsp1109I GCAGC 5 cut(s) 163, 176, 280, 1015, 1027
LweI GCATC 2 cut(s) 799, 1027
MaeI CTAG 4 cut(s) 360, 387, 513, 801
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 6 cut(s) 16, 617, 779, 925, 1097, 1246
MalI GATC 2 cut(s) 53, 933
MboI GATC 2 cut(s) 51, 931
MboII GAAGA 7 cut(s) 103, 139, 163, 673, 871, 926, 1050
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 2 cut(s) 849, 1074
MluNI TGGCCA 1 cut(s) 73
MlyI GAGTC 2 cut(s) 632, 1142
MmeI TCCRAC 4 cut(s) 57, 371, 462, 525
Mox20I TGGCCA 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 1010
MscI TGGCCA 1 cut(s) 73
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 4 cut(s) 411, 795, 828, 1188
Msp20I TGGCCA 1 cut(s) 73
MspI CCGG 7 cut(s) 193, 205, 263, 370, 376, 443, 869
MspR9I CCNGG 1 cut(s) 377
MwoI GCNNNNNNNGC 5 cut(s) 259, 725, 1037, 1180, 1202
NciI CCSGG 1 cut(s) 377
NdeII GATC 2 cut(s) 51, 931
NlaIII CATG 6 cut(s) 413, 674, 695, 1037, 1187, 1217
NlaIV GGNNCC 4 cut(s) 31, 374, 570, 1256
NmuCI GTSAC 3 cut(s) 16, 925, 1097
PagI TCATGA 2 cut(s) 691, 1033
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 2 cut(s) 288, 1159
PinAI ACCGGT 1 cut(s) 868
PkrI GCNGC 6 cut(s) 178, 191, 255, 295, 1030, 1042
PleI GAGTC 2 cut(s) 631, 1141
PpsI GAGTC 2 cut(s) 631, 1141
PpuMI RGGWCCY 2 cut(s) 426, 568
PshAI GACNNNNGTC 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 316
Psp5II RGGWCCY 2 cut(s) 426, 568
PspFI CCCAGC 1 cut(s) 1261
PspN4I GGNNCC 4 cut(s) 31, 374, 570, 1256
PspPI GGNCC 4 cut(s) 195, 426, 568, 1254
PspPPI RGGWCCY 2 cut(s) 426, 568
PstI CTGCAG 2 cut(s) 59, 436
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 2 cut(s) 374, 857
RsaNI GTAC 2 cut(s) 373, 856
RseI CAYNNNNRTG 4 cut(s) 411, 795, 828, 1188
Rsr2I CGGWCCG 1 cut(s) 195
RsrII CGGWCCG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 6 cut(s) 177, 190, 254, 294, 1029, 1041
Sau3AI GATC 2 cut(s) 51, 931
Sau96I GGNCC 4 cut(s) 195, 426, 568, 1254
SchI GAGTC 2 cut(s) 632, 1142
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 1 cut(s) 316
SfaNI GCATC 2 cut(s) 799, 1027
SfcI CTRYAG 3 cut(s) 12, 55, 432
SinI GGWCC 3 cut(s) 195, 426, 568
SmiMI CAYNNNNRTG 4 cut(s) 411, 795, 828, 1188
Sse9I AATT 2 cut(s) 849, 1074
SsiI CCGC 3 cut(s) 198, 251, 254
SspMI CTAG 4 cut(s) 360, 387, 513, 801
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 375
TaaI ACNGT 2 cut(s) 16, 987
TaiI ACGT 1 cut(s) 306
TaqI TCGA 4 cut(s) 139, 882, 1014, 1177
TasI AATT 2 cut(s) 849, 1074
TatI WGTACW 1 cut(s) 855
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 2 cut(s) 288, 1159
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 3 cut(s) 16, 925, 1097
TseI GCWGC 5 cut(s) 176, 189, 293, 1028, 1040
Tsp45I GTSAC 3 cut(s) 16, 925, 1097
TspDTI ATGAA 5 cut(s) 103, 140, 708, 756, 1032
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 3 cut(s) 195, 426, 568
XbaI TCTAGA 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 1058
XmnI GAANNNNTTC 1 cut(s) 1010
XspI CTAG 4 cut(s) 360, 387, 513, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.