AT1G08490

Cysteine desulfurase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2685659 .. 2688658
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08490.1

Sequence Viewer

Length: 1392 bp
ATGGAAGGTGTGGCTATGAAACTCCCGTCGTTCCCTAACGCCATCTCCATCGGCCACCGGAGCTTCTCCCGCGTTCGTTGCTCCTCTTCGCTATCCGTTTGTTCCGCCGCCGCCGCTTCCTCCGCCACCATCTCCACTGATTCCGAATCCGTCTCTCTCGGCCATCGCGTTCGAAAAGATTTCCGAATTCTCCACCAGGAAGTGAATGGGTCAAAGCTTGTGTACTTAGACAGTGCTGCAACTTCTCAGAAGCCAGCAGCTGTATTGGACGCTTTGCAGAATTACTATGAGTTCTATAATTCCAACGTTCATCGAGGAATACACTATTTAAGTGCTAAAGCTACAGATGAATTTGAGTTAGCTAGGAAAAAAGTTGCTCGTTTCATCAATGCTTCTGATAGTAGAGAGATTGTTTTTACAAGGAATGCCACTGAAGCCATCAATCTTGTAGCTTATTCATGGGGTCTTTCTAATCTTAAACCAGGAGACGAGGTTATACTTACAGTTGCTGAACATCATAGTTGCATTGTTCCTTGGCAAATTGTATCTCAAAAAACTGGAGCAGTTCTAAAGTTTGTGACTTTGAATGAGGATGAAGTCCCTGACATAAACAAGTTGAGAGAATTGATTTCTCCAAAGACAAAGCTCGTCGCTGTTCATCATGTTTCTAATGTTCTTGCATCTTCTCTTCCTATTGAAGAGATTGTGGTATGGGCACACGATGTTGGAGCGAAAGTTCTAGTGGATGCTTGTCAAAGTGTTCCTCACATGGTGGTTGATGTCCAGAAGCTTAATGCTGATTTTCTAGTTGCGTCTTCTCACAAGATGTGTGGACCTACAGGCATTGGGTTCTTATATGGTAAGAGTGATCTTCTACATTCCATGCCTCCATTCTTAGGTGGCGGAGAAATGATCTCAGATGTATTTCTTGACCATTCAACTTATGCGGAACCTCCATCCAGATTTGAAGCTGGAACACCTGCAATAGGAGAAGCAATTGCCCTTGGAGCAGCAGTTGATTACTTGTCAGGAATTGGCATGCCGAAAATCCATGAATATGAGGTAGAGATTGGTAAGTATTTGTACGAGAAACTGTCTTCCCTGCCTGATGTGCGGATATACGGTCCCAGACCTTCTGAAAGTGTTCACAGGGGTGCTCTTTGTTCCTTCAATGTGGAGGGCTTGCACCCAACTGATTTGGCAACCTTTCTTGATCAGCAGCACGGAGTTGCAATAAGGTCAGGACACCACTGCGCACAGCCACTCCACCGGTATCTTGGAGTGAATGCAAGTGCACGCGCCAGCCTCTACTTTTACAACACAAAGGATGACGTTGACGCCTTCATCGTTGCGCTGGCAGACACTGTGAGCTTCTTCAACTCTTTCAAATAA

Protein Analysis

463

Amino Acids

50.48

Weight (kDa)

6.23

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 74 - 448 6e-145 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 113 - 255 9.6e-07 DegT/DnrJ/EryC1/StrS aminotransferase family
Cys_Met_Meta_PP PF01053 158 - 275 8e-09 Cys/Met metabolism PLP-dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 988
Acc16I TGCGCA 1 cut(s) 1255
Acc36I ACCTGC 1 cut(s) 988
AccII CGCG 3 cut(s) 72, 168, 1299
AciI CCGC 9 cut(s) 70, 105, 108, 111, 114, 123, 903, 947, 1114
AclI AACGTT 1 cut(s) 306
AcoI YGGCCR 2 cut(s) 52, 160
AcsI RAATTY 2 cut(s) 186, 350
AcuI CTGAAG 1 cut(s) 453
AcyI GRCGYC 1 cut(s) 1338
AdeI CACNNNGTG 1 cut(s) 772
AfaI GTAC 2 cut(s) 224, 1085
AfiI CCNNNNNNNGG 2 cut(s) 896, 986
AgeI ACCGGT 1 cut(s) 1269
AgsI TTSAA 7 cut(s) 586, 698, 939, 968, 1171, 1378, 1387
AjnI CCWGG 2 cut(s) 195, 481
AleI CACNNNNGTG 1 cut(s) 1152
AloI GAACNNNNNNTCC 2 cut(s) 720, 752
Alw21I GWGCWC 2 cut(s) 1159, 1297
Alw26I GTCTC 2 cut(s) 157, 480
Alw44I GTGCAC 1 cut(s) 1293
AlwNI CAGNNNCTG 3 cut(s) 260, 509, 1364
AoxI GGCC 2 cut(s) 52, 160
ApaLI GTGCAC 1 cut(s) 1293
ApeKI GCWGC 4 cut(s) 236, 257, 1010, 1219
ApoI RAATTY 2 cut(s) 186, 350
AsiGI ACCGGT 1 cut(s) 1269
Asp700I GAANNNNTTC 1 cut(s) 1143
AspLEI GCGC 3 cut(s) 1256, 1301, 1354
AspS9I GGNCC 2 cut(s) 833, 1124
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 2 cut(s) 833, 1124
BaeGI GKGCMC 2 cut(s) 718, 1297
BbsI GAAGAC 2 cut(s) 807, 1089
Bbv12I GWGCWC 2 cut(s) 1159, 1297
BbvI GCAGC 4 cut(s) 223, 269, 1022, 1231
BccI CCATC 6 cut(s) 50, 56, 137, 171, 446, 964
BciT130I CCWGG 2 cut(s) 197, 483
BclI TGATCA 1 cut(s) 1213
BcoDI GTCTC 2 cut(s) 157, 480
BfaI CTAG 3 cut(s) 363, 740, 806
BfmI CTRYAG 2 cut(s) 342, 837
BfuAI ACCTGC 1 cut(s) 988
BisI GCNGC 7 cut(s) 108, 111, 114, 237, 258, 1011, 1220
BlsI GCNGC 7 cut(s) 109, 112, 115, 238, 259, 1012, 1221
Bme1390I CCNGG 2 cut(s) 197, 483
Bme18I GGWCC 2 cut(s) 833, 1124
BmgT120I GGNCC 2 cut(s) 833, 1124
BmiI GGNNCC 2 cut(s) 951, 1126
BmrFI CCNGG 2 cut(s) 197, 483
BmsI GCATC 2 cut(s) 689, 736
BpiI GAAGAC 2 cut(s) 807, 1089
BpmI CTGGAG 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 1338
BsaJI CCNNGG 2 cut(s) 533, 1003
BsaWI WCCGGW 2 cut(s) 57, 1269
Bsc4I CCNNNNNNNGG 2 cut(s) 896, 986
Bse118I RCCGGY 1 cut(s) 1269
Bse1I ACTGG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 197, 483
BseDI CCNNGG 2 cut(s) 533, 1003
BseGI GGATG 4 cut(s) 598, 751, 956, 1333
BseLI CCNNNNNNNGG 2 cut(s) 896, 986
BseMII CTCAG 2 cut(s) 260, 930
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 73
BseSI GKGCMC 2 cut(s) 718, 1297
BseXI GCAGC 4 cut(s) 223, 269, 1022, 1231
Bsh1236I CGCG 3 cut(s) 72, 168, 1299
BshFI GGCC 2 cut(s) 54, 162
BshTI ACCGGT 1 cut(s) 1269
BsiHKAI GWGCWC 2 cut(s) 1159, 1297
BsiSI CCGG 2 cut(s) 58, 1270
BslFI GGGAC 2 cut(s) 584, 1110
BslI CCNNNNNNNGG 2 cut(s) 896, 986
BsmAI GTCTC 2 cut(s) 157, 480
BsmBI CGTCTC 2 cut(s) 157, 480
BsmFI GGGAC 2 cut(s) 584, 1110
BsmI GAATGC 2 cut(s) 430, 1291
BsnI GGCC 2 cut(s) 54, 162
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 3 cut(s) 718, 1159, 1297
Bsp143I GATC 3 cut(s) 868, 912, 1213
BspACI CCGC 9 cut(s) 70, 105, 108, 111, 114, 123, 903, 947, 1114
BspANI GGCC 2 cut(s) 54, 162
BspCNI CTCAG 2 cut(s) 259, 929
BspFNI CGCG 3 cut(s) 72, 168, 1299
BspLI GGNNCC 2 cut(s) 951, 1126
BspMI ACCTGC 1 cut(s) 988
BspT104I TTCGAA 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 1269
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 1269
BssECI CCNNGG 2 cut(s) 533, 1003
BssMI GATC 3 cut(s) 868, 912, 1213
BssNI GRCGYC 1 cut(s) 1338
BssT1I CCWWGG 2 cut(s) 533, 1003
Bst2UI CCWGG 2 cut(s) 197, 483
Bst4CI ACNGT 5 cut(s) 233, 505, 1095, 1124, 1366
Bst6I CTCTTC 3 cut(s) 91, 693, 693
BstACI GRCGYC 1 cut(s) 1338
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 6 cut(s) 255, 1040, 1184, 1297, 1303, 1356
BstDEI CTNAG 4 cut(s) 226, 246, 895, 916
BstENI CCTNNNNNAGG 1 cut(s) 984
BstF5I GGATG 4 cut(s) 598, 751, 956, 1333
BstFNI CGCG 3 cut(s) 72, 168, 1299
BstHHI GCGC 3 cut(s) 1256, 1301, 1354
BstKTI GATC 3 cut(s) 871, 915, 1216
BstMAI GTCTC 2 cut(s) 157, 480
BstMBI GATC 3 cut(s) 868, 912, 1213
BstMWI GCNNNNNNNGC 8 cut(s) 60, 69, 78, 113, 122, 434, 1007, 1111
BstNI CCWGG 2 cut(s) 197, 483
BstNSI RCATGY 1 cut(s) 1042
BstSCI CCNGG 2 cut(s) 195, 481
BstSFI CTRYAG 2 cut(s) 342, 837
BstSLI GKGCMC 2 cut(s) 718, 1297
BstUI CGCG 3 cut(s) 72, 168, 1299
BstV1I GCAGC 4 cut(s) 223, 269, 1022, 1231
BstV2I GAAGAC 2 cut(s) 807, 1089
BsuRI GGCC 2 cut(s) 54, 162
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 4 cut(s) 598, 751, 956, 1333
BtsI GCAGTG 1 cut(s) 1249
BtsIMutI CAGTG 5 cut(s) 135, 238, 429, 1249, 1362
BveI ACCTGC 1 cut(s) 988
Cac8I GCNNGC 6 cut(s) 255, 1040, 1184, 1297, 1303, 1356
CaiI CAGNNNCTG 3 cut(s) 260, 509, 1364
CfoI GCGC 3 cut(s) 1256, 1301, 1354
Cfr10I RCCGGY 1 cut(s) 1269
Cfr13I GGNCC 2 cut(s) 833, 1124
CseI GACGC 3 cut(s) 278, 801, 1346
Csp6I GTAC 2 cut(s) 223, 1084
CspAI ACCGGT 1 cut(s) 1269
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 6 cut(s) 459, 662, 769, 883, 1039, 1052
CviQI GTAC 2 cut(s) 223, 1084
DdeI CTNAG 4 cut(s) 226, 246, 895, 916
DpnI GATC 3 cut(s) 870, 914, 1215
DpnII GATC 3 cut(s) 868, 912, 1213
DraIII CACNNNGTG 1 cut(s) 772
EaeI YGGCCR 2 cut(s) 52, 160
Eam1104I CTCTTC 3 cut(s) 91, 693, 693
EarI CTCTTC 3 cut(s) 91, 693, 693
EciI GGCGGA 3 cut(s) 94, 112, 918
Eco130I CCWWGG 2 cut(s) 533, 1003
Eco47I GGWCC 2 cut(s) 833, 1124
Eco57I CTGAAG 1 cut(s) 453
EcoNI CCTNNNNNAGG 1 cut(s) 984
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 195, 481
EcoT14I CCWWGG 2 cut(s) 533, 1003
ErhI CCWWGG 2 cut(s) 533, 1003
Esp3I CGTCTC 2 cut(s) 157, 480
FaeI CATG 6 cut(s) 462, 665, 772, 886, 1042, 1055
FaqI GGGAC 2 cut(s) 584, 1110
FatI CATG 6 cut(s) 458, 661, 768, 882, 1038, 1051
FauI CCCGC 1 cut(s) 77
FbaI TGATCA 1 cut(s) 1213
Fnu4HI GCNGC 7 cut(s) 108, 111, 114, 237, 258, 1011, 1220
FokI GGATG 4 cut(s) 605, 758, 943, 1340
Fsp4HI GCNGC 7 cut(s) 108, 111, 114, 237, 258, 1011, 1220
FspBI CTAG 3 cut(s) 363, 740, 806
FspI TGCGCA 1 cut(s) 1255
GlaI GCGC 3 cut(s) 1255, 1300, 1353
GluI GCNGC 7 cut(s) 108, 111, 114, 237, 258, 1011, 1220
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 2 cut(s) 54, 162
HapII CCGG 2 cut(s) 58, 1270
HgaI GACGC 3 cut(s) 278, 801, 1346
HhaI GCGC 3 cut(s) 1256, 1301, 1354
Hin1I GRCGYC 1 cut(s) 1338
Hin1II CATG 6 cut(s) 462, 665, 772, 886, 1042, 1055
Hin6I GCGC 3 cut(s) 1254, 1299, 1352
HinP1I GCGC 3 cut(s) 1254, 1299, 1352
HincII GTYRAC 1 cut(s) 1336
HindII GTYRAC 1 cut(s) 1336
HindIII AAGCTT 2 cut(s) 215, 788
HinfI GANTC 2 cut(s) 140, 146
HpaII CCGG 2 cut(s) 58, 1270
Hpy166II GTNNAC 5 cut(s) 223, 833, 1147, 1295, 1336
Hpy188I TCNGA 6 cut(s) 145, 185, 249, 397, 919, 1138
Hpy188III TCNNGA 6 cut(s) 784, 929, 960, 1029, 1211, 1242
Hpy8I GTNNAC 5 cut(s) 223, 833, 1147, 1295, 1336
Hpy99I CGWCG 2 cut(s) 31, 653
HpyAV CCTTC 3 cut(s) 1143, 1177, 1351
HpyCH4III ACNGT 5 cut(s) 233, 505, 1095, 1124, 1366
HpyCH4IV ACGT 2 cut(s) 306, 1332
HpyCH4V TGCA 9 cut(s) 239, 277, 525, 680, 983, 1186, 1232, 1289, 1295
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 69, 78, 113, 122, 434, 1007, 1111
HpyF3I CTNAG 4 cut(s) 226, 246, 895, 916
HpySE526I ACGT 2 cut(s) 306, 1332
Hsp92I GRCGYC 1 cut(s) 1338
Hsp92II CATG 6 cut(s) 462, 665, 772, 886, 1042, 1055
HspAI GCGC 3 cut(s) 1254, 1299, 1352
Ksp22I TGATCA 1 cut(s) 1213
Kzo9I GATC 3 cut(s) 868, 912, 1213
LmnI GCTCC 5 cut(s) 60, 86, 560, 728, 1007
Lsp1109I GCAGC 4 cut(s) 223, 269, 1022, 1231
LweI GCATC 2 cut(s) 689, 736
MaeI CTAG 3 cut(s) 363, 740, 806
MaeII ACGT 2 cut(s) 306, 1332
MaeIII GTNAC 1 cut(s) 577
MalI GATC 3 cut(s) 870, 914, 1215
MboI GATC 3 cut(s) 868, 912, 1213
MboII GAAGA 8 cut(s) 78, 675, 680, 710, 807, 863, 1089, 1366
MfeI CAATTG 1 cut(s) 996
MhlI GDGCHC 3 cut(s) 718, 1159, 1297
MluCI AATT 8 cut(s) 186, 280, 298, 350, 540, 623, 996, 1032
MmeI TCCRAC 2 cut(s) 327, 706
MroXI GAANNNNTTC 1 cut(s) 1143
MseI TTAA 3 cut(s) 329, 477, 792
MslI CAYNNNNRTG 2 cut(s) 1056, 1152
MspA1I CMGCKG 1 cut(s) 260
MspI CCGG 2 cut(s) 58, 1270
MspR9I CCNGG 2 cut(s) 197, 483
MunI CAATTG 1 cut(s) 996
Mva1269I GAATGC 2 cut(s) 430, 1291
MvaI CCWGG 2 cut(s) 197, 483
MvnI CGCG 3 cut(s) 72, 168, 1299
MwoI GCNNNNNNNGC 8 cut(s) 60, 69, 78, 113, 122, 434, 1007, 1111
NdeII GATC 3 cut(s) 868, 912, 1213
NlaIII CATG 6 cut(s) 462, 665, 772, 886, 1042, 1055
NlaIV GGNNCC 2 cut(s) 951, 1126
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 577
NsbI TGCGCA 1 cut(s) 1255
NspI RCATGY 1 cut(s) 1042
NspV TTCGAA 1 cut(s) 172
OliI CACNNNNGTG 1 cut(s) 1152
PaeI GCATGC 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 988
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 1344
PctI GAATGC 2 cut(s) 430, 1291
PdmI GAANNNNTTC 1 cut(s) 1143
PfeI GAWTC 2 cut(s) 140, 146
PinAI ACCGGT 1 cut(s) 1269
PkrI GCNGC 7 cut(s) 109, 112, 115, 238, 259, 1012, 1221
Psp1406I AACGTT 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 195, 481
PspGI CCWGG 2 cut(s) 195, 481
PspN4I GGNNCC 2 cut(s) 951, 1126
PspPI GGNCC 2 cut(s) 833, 1124
PstNI CAGNNNCTG 3 cut(s) 260, 509, 1364
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 224, 1085
RsaNI GTAC 2 cut(s) 223, 1084
RseI CAYNNNNRTG 2 cut(s) 1056, 1152
SaqAI TTAA 3 cut(s) 329, 477, 792
SatI GCNGC 7 cut(s) 108, 111, 114, 237, 258, 1011, 1220
Sau3AI GATC 3 cut(s) 868, 912, 1213
Sau96I GGNCC 2 cut(s) 833, 1124
ScrFI CCNGG 2 cut(s) 197, 483
SduI GDGCHC 3 cut(s) 718, 1159, 1297
SfaNI GCATC 2 cut(s) 689, 736
SfcI CTRYAG 2 cut(s) 342, 837
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 2 cut(s) 833, 1124
SmiMI CAYNNNNRTG 2 cut(s) 1056, 1152
SphI GCATGC 1 cut(s) 1042
Sse9I AATT 8 cut(s) 186, 280, 298, 350, 540, 623, 996, 1032
SsiI CCGC 9 cut(s) 70, 105, 108, 111, 114, 123, 903, 947, 1114
SspMI CTAG 3 cut(s) 363, 740, 806
StyD4I CCNGG 2 cut(s) 195, 481
StyI CCWWGG 2 cut(s) 533, 1003
TaaI ACNGT 5 cut(s) 233, 505, 1095, 1124, 1366
TaiI ACGT 2 cut(s) 309, 1335
TaqI TCGA 2 cut(s) 172, 313
TasI AATT 8 cut(s) 186, 280, 298, 350, 540, 623, 996, 1032
TatI WGTACW 1 cut(s) 222
TauI GCSGC 3 cut(s) 110, 113, 116
TfiI GAWTC 2 cut(s) 140, 146
Tru1I TTAA 3 cut(s) 329, 477, 792
Tru9I TTAA 3 cut(s) 329, 477, 792
TscAI CASTG 5 cut(s) 142, 238, 436, 1256, 1369
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 4 cut(s) 236, 257, 1010, 1219
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 9 cut(s) 32, 299, 363, 373, 447, 609, 647, 1068, 1333
TspGWI ACGGA 3 cut(s) 85, 139, 1239
TspRI CASTG 5 cut(s) 142, 238, 436, 1256, 1369
VneI GTGCAC 1 cut(s) 1293
VpaK11BI GGWCC 2 cut(s) 833, 1124
XagI CCTNNNNNAGG 1 cut(s) 984
XapI RAATTY 2 cut(s) 186, 350
XceI RCATGY 1 cut(s) 1042
XcmI CCANNNNNNNNNTGG 2 cut(s) 203, 1274
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 3 cut(s) 363, 740, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.