FvH4_7g04540

Cysteine desulfurase 2

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
5083579 .. 5088975
5397 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04540.t1

Sequence Viewer

Length: 1365 bp
ATGATGACACTGGAAGGAGTGGCCCTAAAACTGCCACCATATTCATTCCCGTTGATAAGAAGCCCTCGAACCTTCCGACGCTATCTCGTATCAGCTTCAACTGCTGCAGCTCCACCCGCATCCCTTTCACTTGGCCACTTGACCCGACCCGATTTCCCTATCCTTCACCAGGAAGTATATGGATCTAGACTTGTTTACTTGGACAATGCTGCAACTTCCCAGAAACCTATCACCGTATTAAAGGCTTTGCAGGAGTACTATCAAGGATACAATTCAAACGTGCATCGTGGGATTCATTTCTTAAGTTCAAAGGCAACAATGGAATATGAATTGGCCAGAAAGAAGATTTCGGAATTTATCAATGCATCAGATTCTCAAGAAATTGTATTTACTAGGAATGCTACTGAAGCCATCAATCTGGTTGCTCACTCGTGGGGACTCCAAAATATAAAATCAGATGATGAGATCCTACTCACAGTTGCCGAACATCACAGTGCTATTGTTCCTTGGCAACTCGTTGCTCAAAAGACCAGTGCCATTTTGAAATTTGTGGAACTAAATGAAGATGGAGTTCCAGATGTTGAAAAATTAAAAGATATGCTTTCGAGAAAGACAAAACTTGTAGTTGTTCATCATGTCTCAAATGTTCTAGGTTCTGTTCTTCCTATTGAAGATATCACATGTTGTGCTCATGATGTTGGGGCAAAAGTTCTTGTAGATGCTTGTCAGAGTGTTCCACACATGGTGGTTGATGTACAGAATCTTAATGCTGACTTTCTGGTTGCTTCCTCTCACAAGATGTGTGGGCCTACGGGAATTGGATTCTTGTACGGCAAGAGTGACCTCCTTTCTTCCATGCCTCCATTTTTAGGTGGTGGAGAAATGATATCTGATGTATTTCTGGACCATTCCACTTATGCCGAACCTCCATCTAGATTCGAGGCTGGAACACCAGCAATTGGGGAAGCAATTGGGCTGGGAGCAGCTGTTGATTATTTGTCTGGAATTGGTATGCAAAAGATACACGAGTATGAGATAGAGCTGGCCAAATATTTGTATGATAGTCTTTGTACAATACCCAACATTCACATTTATGGTCCAGTGCCTTCAGAAAATAACCACCGCGCTGCTCTTTGTTCTTTCAATGTTGAGAATATACACCCTACAGATTTGGCAACTCTTCTTGACCAAGAGCATGGAGTGGCAATCAGATCAGGTCACCATTGCGCCCAACCCCTTCATCGACATTTAGGAGTCGGTTCAAGTGCACGTGCGAGTCTCTACTTCTACAACACTAGAGAGGATGTTGATGACTTTATCCATGCCCTAAATGACACAGTCAGATTCTTTAATTCTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

50.0

Weight (kDa)

5.94

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 65 - 439 1e-146 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 118 - 246 1.5e-06 DegT/DnrJ/EryC1/StrS aminotransferase family
Cys_Met_Meta_PP PF01053 165 - 266 3e-06 Cys/Met metabolism PLP-dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 959
AccII CGCG 1 cut(s) 1125
AciI CCGC 2 cut(s) 117, 1123
AclWI GGATC 2 cut(s) 190, 460
AcoI YGGCCR 3 cut(s) 133, 333, 1044
AcsI RAATTY 2 cut(s) 353, 545
AcuI CTGAAG 2 cut(s) 426, 1092
AcvI CACGTG 1 cut(s) 1271
AdeI CACNNNGTG 1 cut(s) 745
AfaI GTAC 4 cut(s) 257, 756, 830, 1072
AfiI CCNNNNNNNGG 3 cut(s) 169, 869, 959
AflII CTTAAG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 680
AgsI TTSAA 9 cut(s) 99, 276, 309, 544, 584, 671, 1144, 1263, 1360
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 4 cut(s) 95, 110, 986, 1042
AluI AGCT 4 cut(s) 95, 110, 986, 1042
Alw21I GWGCWC 2 cut(s) 691, 1270
Alw26I GTCTC 2 cut(s) 643, 1283
Alw44I GTGCAC 1 cut(s) 1266
AlwI GGATC 2 cut(s) 190, 460
AoxI GGCC 5 cut(s) 21, 133, 333, 806, 1044
ApaLI GTGCAC 1 cut(s) 1266
ApeKI GCWGC 5 cut(s) 104, 107, 209, 983, 1127
ApoI RAATTY 2 cut(s) 353, 545
AspLEI GCGC 2 cut(s) 1127, 1229
AspS9I GGNCC 4 cut(s) 22, 806, 904, 1097
AsuHPI GGTGA 3 cut(s) 158, 223, 1211
AvaII GGWCC 2 cut(s) 904, 1097
BaeGI GKGCMC 1 cut(s) 1270
BaeI ACNNNNGTAYC 2 cut(s) 1013, 1046
BalI TGGCCA 3 cut(s) 135, 335, 1046
BauI CACGAG 2 cut(s) 430, 1025
BbrPI CACGTG 1 cut(s) 1271
Bbv12I GWGCWC 2 cut(s) 691, 1270
BbvI GCAGC 5 cut(s) 91, 119, 196, 995, 1114
BccI CCATC 3 cut(s) 419, 560, 937
BceAI ACGGC 1 cut(s) 847
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 643, 1283
BfaI CTAG 5 cut(s) 186, 393, 650, 933, 1296
BfmI CTRYAG 2 cut(s) 105, 1164
BfrI CTTAAG 1 cut(s) 301
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 5 cut(s) 105, 108, 210, 984, 1128
BlsI GCNGC 5 cut(s) 106, 109, 211, 985, 1129
BmcAI AGTACT 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 904, 1097
BmgT120I GGNCC 4 cut(s) 22, 806, 904, 1097
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 4 cut(s) 128, 292, 374, 709
BpuEI CTTGAG 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 1271
BsaJI CCNNGG 1 cut(s) 506
BsaXI ACNNNNNCTCC 2 cut(s) 972, 1002
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 869, 959
Bse1I ACTGG 3 cut(s) 15, 531, 1100
Bse3DI GCAATG 1 cut(s) 1222
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 506
BseGI GGATG 2 cut(s) 119, 1309
BseLI CCNNNNNNNGG 3 cut(s) 169, 869, 959
BseMI GCAATG 1 cut(s) 1222
BseNI ACTGG 3 cut(s) 15, 531, 1100
BseSI GKGCMC 1 cut(s) 1270
BseXI GCAGC 5 cut(s) 91, 119, 196, 995, 1114
BseYI CCCAGC 1 cut(s) 976
Bsh1236I CGCG 1 cut(s) 1125
BshFI GGCC 5 cut(s) 23, 135, 335, 808, 1046
BsiHKAI GWGCWC 2 cut(s) 691, 1270
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 3 cut(s) 169, 869, 959
BsmAI GTCTC 2 cut(s) 643, 1283
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 5 cut(s) 23, 135, 335, 808, 1046
Bsp1286I GDGCHC 2 cut(s) 691, 1270
Bsp1407I TGTACA 2 cut(s) 754, 1070
Bsp143I GATC 3 cut(s) 182, 465, 1211
BspACI CCGC 2 cut(s) 117, 1123
BspANI GGCC 5 cut(s) 23, 135, 335, 808, 1046
BspFNI CGCG 1 cut(s) 1125
BspHI TCATGA 1 cut(s) 691
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 190, 460
BspTI CTTAAG 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 1222
BsrGI TGTACA 2 cut(s) 754, 1070
BsrI ACTGG 3 cut(s) 15, 531, 1100
BssECI CCNNGG 1 cut(s) 506
BssMI GATC 3 cut(s) 182, 465, 1211
BssSI CACGAG 2 cut(s) 430, 1025
BssT1I CCWWGG 1 cut(s) 506
Bst2BI CACGAG 2 cut(s) 430, 1025
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 4 cut(s) 235, 478, 494, 1339
Bst6I CTCTTC 1 cut(s) 1185
BstAFI CTTAAG 1 cut(s) 301
BstAUI TGTACA 2 cut(s) 754, 1070
BstBAI YACGTR 1 cut(s) 1271
BstC8I GCNNGC 1 cut(s) 1044
BstEII GGTNACC 1 cut(s) 1217
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 119, 1309
BstFNI CGCG 1 cut(s) 1125
BstHHI GCGC 2 cut(s) 1127, 1229
BstKTI GATC 3 cut(s) 185, 468, 1214
BstMAI GTCTC 2 cut(s) 643, 1283
BstMBI GATC 3 cut(s) 182, 465, 1211
BstMWI GCNNNNNNNGC 3 cut(s) 101, 116, 407
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 684
BstPI GGTNACC 1 cut(s) 1217
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 2 cut(s) 105, 1164
BstSLI GKGCMC 1 cut(s) 1270
BstUI CGCG 1 cut(s) 1125
BstV1I GCAGC 5 cut(s) 91, 119, 196, 995, 1114
BstX2I RGATCY 2 cut(s) 182, 465
BstXI CCANNNNNNTGG 2 cut(s) 418, 1196
BstYI RGATCY 2 cut(s) 182, 465
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 5 cut(s) 23, 135, 335, 808, 1046
BtsCI GGATG 2 cut(s) 119, 1309
BtsIMutI CAGTG 4 cut(s) 8, 499, 538, 1107
Cac8I GCNNGC 1 cut(s) 1044
CciI TCATGA 1 cut(s) 691
CfoI GCGC 2 cut(s) 1127, 1229
Cfr13I GGNCC 4 cut(s) 22, 806, 904, 1097
CseI GACGC 1 cut(s) 87
Csp6I GTAC 4 cut(s) 256, 755, 829, 1071
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 7 cut(s) 635, 681, 692, 742, 856, 1196, 1322
CviQI GTAC 4 cut(s) 256, 755, 829, 1071
DpnI GATC 3 cut(s) 184, 467, 1213
DpnII GATC 3 cut(s) 182, 465, 1211
DraIII CACNNNGTG 1 cut(s) 745
EaeI YGGCCR 3 cut(s) 133, 333, 1044
Eam1104I CTCTTC 1 cut(s) 1185
EarI CTCTTC 1 cut(s) 1185
Eco130I CCWWGG 1 cut(s) 506
Eco32I GATATC 2 cut(s) 676, 888
Eco47I GGWCC 2 cut(s) 904, 1097
Eco57I CTGAAG 2 cut(s) 426, 1092
Eco72I CACGTG 1 cut(s) 1271
Eco91I GGTNACC 1 cut(s) 1217
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 1217
EcoRII CCWGG 1 cut(s) 168
EcoRV GATATC 2 cut(s) 676, 888
EcoT14I CCWWGG 1 cut(s) 506
EcoT22I ATGCAT 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 506
FaeI CATG 7 cut(s) 638, 684, 695, 745, 859, 1199, 1325
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 1 cut(s) 450
FatI CATG 7 cut(s) 634, 680, 691, 741, 855, 1195, 1321
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 5 cut(s) 105, 108, 210, 984, 1128
FokI GGATG 2 cut(s) 106, 1316
Fsp4HI GCNGC 5 cut(s) 105, 108, 210, 984, 1128
FspBI CTAG 5 cut(s) 186, 393, 650, 933, 1296
GlaI GCGC 2 cut(s) 1126, 1228
GluI GCNGC 5 cut(s) 105, 108, 210, 984, 1128
GsaI CCCAGC 1 cut(s) 980
HaeIII GGCC 5 cut(s) 23, 135, 335, 808, 1046
HgaI GACGC 1 cut(s) 87
HhaI GCGC 2 cut(s) 1127, 1229
Hin1II CATG 7 cut(s) 638, 684, 695, 745, 859, 1199, 1325
Hin6I GCGC 2 cut(s) 1125, 1227
HinP1I GCGC 2 cut(s) 1125, 1227
HinfI GANTC 9 cut(s) 292, 371, 438, 760, 822, 936, 1254, 1276, 1344
HphI GGTGA 3 cut(s) 158, 223, 1211
Hpy166II GTNNAC 2 cut(s) 196, 1268
Hpy188I TCNGA 9 cut(s) 77, 352, 370, 457, 729, 892, 1111, 1211, 1343
Hpy188III TCNNGA 9 cut(s) 186, 377, 575, 606, 692, 902, 933, 1002, 1184
Hpy8I GTNNAC 2 cut(s) 196, 1268
Hpy99I CGWCG 1 cut(s) 81
HpyAV CCTTC 5 cut(s) 8, 82, 173, 1116, 1247
HpyCH4III ACNGT 4 cut(s) 235, 478, 494, 1339
HpyCH4IV ACGT 2 cut(s) 279, 1270
HpyCH4V TGCA 7 cut(s) 107, 212, 250, 283, 365, 1015, 1268
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 116, 407
HpySE526I ACGT 2 cut(s) 279, 1270
Hsp92II CATG 7 cut(s) 638, 684, 695, 745, 859, 1199, 1325
HspAI GCGC 2 cut(s) 1125, 1227
Kzo9I GATC 3 cut(s) 182, 465, 1211
LmnI GCTCC 2 cut(s) 115, 980
Lsp1109I GCAGC 5 cut(s) 91, 119, 196, 995, 1114
LweI GCATC 4 cut(s) 128, 292, 374, 709
MaeI CTAG 5 cut(s) 186, 393, 650, 933, 1296
MaeII ACGT 2 cut(s) 279, 1270
MaeIII GTNAC 2 cut(s) 839, 1217
MalI GATC 3 cut(s) 184, 467, 1213
MboI GATC 3 cut(s) 182, 465, 1211
MboII GAAGA 6 cut(s) 355, 575, 653, 683, 843, 1172
MfeI CAATTG 2 cut(s) 957, 969
MflI RGATCY 2 cut(s) 182, 465
MhlI GDGCHC 2 cut(s) 691, 1270
MlsI TGGCCA 3 cut(s) 135, 335, 1046
MluNI TGGCCA 3 cut(s) 135, 335, 1046
MlyI GAGTC 3 cut(s) 432, 1263, 1285
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 7 cut(s) 75, 799, 854, 870, 934, 936, 1294
Mox20I TGGCCA 3 cut(s) 135, 335, 1046
Mph1103I ATGCAT 1 cut(s) 367
MscI TGGCCA 3 cut(s) 135, 335, 1046
MseI TTAA 5 cut(s) 239, 302, 590, 765, 1350
MslI CAYNNNNRTG 3 cut(s) 492, 1029, 1092
Msp20I TGGCCA 3 cut(s) 135, 335, 1046
MspA1I CMGCKG 1 cut(s) 986
MspCI CTTAAG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 170
MunI CAATTG 2 cut(s) 957, 969
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 1125
MwoI GCNNNNNNNGC 3 cut(s) 101, 116, 407
NdeII GATC 3 cut(s) 182, 465, 1211
NlaIII CATG 7 cut(s) 638, 684, 695, 745, 859, 1199, 1325
NmuCI GTSAC 2 cut(s) 839, 1217
NsiI ATGCAT 1 cut(s) 367
NspI RCATGY 1 cut(s) 684
PagI TCATGA 1 cut(s) 691
PciI ACATGT 1 cut(s) 680
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 6 cut(s) 292, 371, 760, 822, 936, 1344
PflFI GACNNNGTC 1 cut(s) 1337
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 5 cut(s) 106, 109, 211, 985, 1129
PleI GAGTC 3 cut(s) 432, 1262, 1284
PmaCI CACGTG 1 cut(s) 1271
PmlI CACGTG 1 cut(s) 1271
PpsI GAGTC 3 cut(s) 432, 1262, 1284
Ppu21I YACGTR 1 cut(s) 1271
PscI ACATGT 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 168
PspCI CACGTG 1 cut(s) 1271
PspEI GGTNACC 1 cut(s) 1217
PspFI CCCAGC 1 cut(s) 976
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 4 cut(s) 22, 806, 904, 1097
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 182, 465
PsyI GACNNNGTC 1 cut(s) 1337
PvuII CAGCTG 1 cut(s) 986
RsaI GTAC 4 cut(s) 257, 756, 830, 1072
RsaNI GTAC 4 cut(s) 256, 755, 829, 1071
RseI CAYNNNNRTG 3 cut(s) 492, 1029, 1092
SaqAI TTAA 5 cut(s) 239, 302, 590, 765, 1350
SatI GCNGC 5 cut(s) 105, 108, 210, 984, 1128
Sau3AI GATC 3 cut(s) 182, 465, 1211
Sau96I GGNCC 4 cut(s) 22, 806, 904, 1097
ScaI AGTACT 1 cut(s) 257
SchI GAGTC 3 cut(s) 432, 1263, 1285
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 2 cut(s) 691, 1270
SfaNI GCATC 4 cut(s) 128, 292, 374, 709
SfcI CTRYAG 2 cut(s) 105, 1164
SinI GGWCC 2 cut(s) 904, 1097
SmiMI CAYNNNNRTG 3 cut(s) 492, 1029, 1092
SmlI CTYRAG 2 cut(s) 301, 375
SmoI CTYRAG 2 cut(s) 301, 375
SsiI CCGC 2 cut(s) 117, 1123
SspI AATATT 1 cut(s) 1052
SspMI CTAG 5 cut(s) 186, 393, 650, 933, 1296
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 506
TaaI ACNGT 4 cut(s) 235, 478, 494, 1339
TaiI ACGT 2 cut(s) 282, 1273
TaqI TCGA 4 cut(s) 67, 605, 939, 1243
TatI WGTACW 3 cut(s) 255, 754, 1070
TfiI GAWTC 6 cut(s) 292, 371, 760, 822, 936, 1344
Tru1I TTAA 5 cut(s) 239, 302, 590, 765, 1350
Tru9I TTAA 5 cut(s) 239, 302, 590, 765, 1350
TscAI CASTG 4 cut(s) 15, 499, 538, 1107
TseFI GTSAC 2 cut(s) 839, 1217
TseI GCWGC 5 cut(s) 104, 107, 209, 983, 1127
Tsp45I GTSAC 2 cut(s) 839, 1217
TspDTI ATGAA 6 cut(s) 33, 284, 342, 576, 620, 1229
TspRI CASTG 4 cut(s) 15, 499, 538, 1107
Tth111I GACNNNGTC 1 cut(s) 1337
Van91I CCANNNNNTGG 1 cut(s) 959
Vha464I CTTAAG 1 cut(s) 301
VneI GTGCAC 1 cut(s) 1266
VpaK11BI GGWCC 2 cut(s) 904, 1097
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 2 cut(s) 353, 545
XbaI TCTAGA 2 cut(s) 185, 932
XceI RCATGY 1 cut(s) 684
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XspI CTAG 5 cut(s) 186, 393, 650, 933, 1296
ZrmI AGTACT 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.