MD15G1421300.v1.1

Cysteine desulfurase 2

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
52313120 .. 52320575
7456 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1421300.v1.1.491

Sequence Viewer

Length: 1407 bp
ATGATGTTGACTTTGGAAGGAGTGACTGTAAAACTGCCATACTATTCATTCCCAATCCTACGAAGCCCTGTTCGCCGTGCCATTGTGAACTCGCGACCCTTTTCCGTAGCTGCTTCAACTCTCAAAGAAGGCCACTCAGAGACCCCTTCCGCTCCGCCCACATCCATTTCGCTCGGTCACTTGACCCGACCTGATTTTCCCATCCTCCATCAGGAAGTAAATGGATCTAGGCTTGTTTACTTGGACAATGGTGCAACTTCCCAGAAGCCTACTGCAGTGTTAAAAGCTTTGCAAACTTACTATGAATGCCACAATTCAAATGTGCATCGTGGGATCCATTACTTAAGTGCAAAGGCAACAGAAGAATATGAGCTAGCGAGAAAGAAAGTTTCCAACTTTATCAATGCATCAGACTCCCGAGAAATTGTTTTTACTAGGAATGCTACCGAAGCTATCAATCTGGTTGCTTACTCATGGGGGCTCCAAAACATAAAACCAAATGATGAGATCATACTTACAGTTGCTGAACATCATAGTGCAATCGTTCCTTGGCAATTTGTAGCTCAAAAGACTGGTGCAGTCTTGAAATATGTGGAATTAAATGAGCATGAAGTCCCTGATGTGGACAAGTTAAAAGATATGCTTTCAAGGAAGACAAAGCTCGTAGTTGTTCATCATGTCTCAAACGTGCTTGGTTCTGTTCTTCCTATCAAAGATATTGTGCTTTGTGCTCATGATGTTGGGGCAAAAGTGCTTGTAGATGCTTGTCAGAGTGTTCCACATATGGTGGTTGATGTCCAGAATCTGAACGCCGACTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCGTCGGATTCCTATATGGAAAGAGTGATATCTTGTCTGCCATGCCTCCATTTTTAGGTGGTGGGGAAATGATCTCTGATGTATTTTATGATCATTCCACTTACCAAGAACCTCCATCTAGGTTTGAGGCTGGAACACCAGCAATCGGGGAAGCAATTGGGTTAGGAGCAGCTATTGATTATTTGTCAGGACTTGGTATGCAAAGGATACATGATTATGAGATGTTTCTTGGTAAATATCTATACGAGAGCCTTCAATCTGTCCCCAATATTCGCATTTATGGTCCAGCCCCTTCAGAACACATCTTCCGGGCTGCCCTATGTTCTTTCAACGTTGAGAATATACACCCTACAGATCTGGCAACGTTTCTTGACCAACAGCACGGAGTGGCTATCCGATCAGGTCACCATTGCGCCCAACCCCTTCATCGGCAGTTGGGAGTCAGCGCGAGTGCACGTGCAAGTCTTCACTTTTACAACACCGTAGAGGATGTCGATGACTTGATCCGGGCACTCAACGACACAGTCAGCTTCTTCAATTCTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

51.57

Weight (kDa)

6.28

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 79 - 453 7.6e-144 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 138 - 260 1.8e-06 DegT/DnrJ/EryC1/StrS aminotransferase family
Cys_Met_Meta_PP PF01053 164 - 280 5e-07 Cys/Met metabolism PLP-dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 2 cut(s) 94, 1304
AciI CCGC 2 cut(s) 150, 155
AclI AACGTT 2 cut(s) 1188, 1220
AclWI GGATC 4 cut(s) 232, 328, 341, 1354
AcuI CTGAAG 1 cut(s) 1134
AcvI CACGTG 1 cut(s) 1313
AcyI GRCGYC 1 cut(s) 858
AdeI CACNNNGTG 1 cut(s) 1243
AfiI CCNNNNNNNGG 5 cut(s) 211, 622, 911, 1001, 1284
AflII CTTAAG 1 cut(s) 343
AgsI TTSAA 8 cut(s) 117, 318, 586, 648, 1112, 1186, 1393, 1402
AloI GAACNNNNNNTCC 2 cut(s) 1146, 1178
AluBI AGCT 8 cut(s) 110, 287, 373, 452, 563, 661, 1028, 1386
AluI AGCT 8 cut(s) 110, 287, 373, 452, 563, 661, 1028, 1386
Alw21I GWGCWC 2 cut(s) 733, 1312
Alw26I GTCTC 2 cut(s) 134, 685
Alw44I GTGCAC 1 cut(s) 1308
AlwI GGATC 4 cut(s) 232, 328, 341, 1354
AlwNI CAGNNNCTG 2 cut(s) 524, 805
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 2 cut(s) 130, 848
ApaLI GTGCAC 1 cut(s) 1308
ApeKI GCWGC 3 cut(s) 110, 1025, 1169
AspLEI GCGC 2 cut(s) 1271, 1304
AspS9I GGNCC 2 cut(s) 848, 1139
AsuC2I CCSGG 2 cut(s) 1166, 1364
AsuHPI GGTGA 1 cut(s) 1253
AsuNHI GCTAGC 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 1 cut(s) 1139
BaeGI GKGCMC 2 cut(s) 1312, 1369
BamHI GGATCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 483
BbrPI CACGTG 1 cut(s) 1313
BbsI GAAGAC 2 cut(s) 659, 1313
Bbv12I GWGCWC 2 cut(s) 733, 1312
BbvI GCAGC 3 cut(s) 97, 1037, 1156
BccI CCATC 3 cut(s) 209, 216, 979
BceAI ACGGC 1 cut(s) 60
BciVI GTATCC 1 cut(s) 1056
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 2 cut(s) 1166, 1364
BcoDI GTCTC 2 cut(s) 134, 685
BfaI CTAG 4 cut(s) 228, 374, 435, 975
BfmI CTRYAG 3 cut(s) 273, 852, 1206
BfrI CTTAAG 1 cut(s) 343
BfuI GTATCC 1 cut(s) 1056
BglII AGATCT 1 cut(s) 1210
BisI GCNGC 3 cut(s) 111, 1026, 1170
BlsI GCNGC 3 cut(s) 112, 1027, 1171
Bme1390I CCNGG 2 cut(s) 1166, 1364
Bme18I GGWCC 1 cut(s) 1139
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 2 cut(s) 848, 1139
BmiI GGNNCC 2 cut(s) 335, 482
BmrFI CCNGG 2 cut(s) 1166, 1364
BmsI GCATC 3 cut(s) 334, 416, 751
BmtI GCTAGC 1 cut(s) 377
BpiI GAAGAC 2 cut(s) 659, 1313
BpuMI CCSGG 2 cut(s) 1166, 1364
BsaAI YACGTR 1 cut(s) 1313
BsaHI GRCGYC 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 548
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bsc4I CCNNNNNNNGG 5 cut(s) 211, 622, 911, 1001, 1284
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 1 cut(s) 1264
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 3 cut(s) 161, 201, 1351
BseLI CCNNNNNNNGG 5 cut(s) 211, 622, 911, 1001, 1284
BseMI GCAATG 1 cut(s) 1264
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 577
BseSI GKGCMC 2 cut(s) 1312, 1369
BseXI GCAGC 3 cut(s) 97, 1037, 1156
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 2 cut(s) 94, 1304
BshFI GGCC 2 cut(s) 132, 850
BsiHKAI GWGCWC 2 cut(s) 733, 1312
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 2 cut(s) 1165, 1363
BslFI GGGAC 2 cut(s) 599, 1103
BslI CCNNNNNNNGG 5 cut(s) 211, 622, 911, 1001, 1284
BsmAI GTCTC 2 cut(s) 134, 685
BsmFI GGGAC 2 cut(s) 599, 1103
BsmI GAATGC 2 cut(s) 311, 445
BsnI GGCC 2 cut(s) 132, 850
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 417
Bsp1286I GDGCHC 4 cut(s) 483, 733, 1312, 1369
Bsp143I GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
Bsp68I TCGCGA 1 cut(s) 94
BspACI CCGC 2 cut(s) 150, 155
BspANI GGCC 2 cut(s) 132, 850
BspCNI CTCAG 1 cut(s) 149
BspFNI CGCG 2 cut(s) 94, 1304
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 2 cut(s) 335, 482
BspMAI CTGCAG 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 4 cut(s) 232, 328, 341, 1354
BspTI CTTAAG 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 1264
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
BssNI GRCGYC 1 cut(s) 858
BssT1I CCWWGG 1 cut(s) 548
Bst4CI ACNGT 4 cut(s) 28, 520, 1339, 1381
BstACI GRCGYC 1 cut(s) 858
BstAFI CTTAAG 1 cut(s) 343
BstBAI YACGTR 1 cut(s) 1313
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 136
BstEII GGTNACC 1 cut(s) 1259
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 3 cut(s) 161, 201, 1351
BstFNI CGCG 2 cut(s) 94, 1304
BstHHI GCGC 2 cut(s) 1271, 1304
BstKTI GATC 8 cut(s) 227, 336, 510, 930, 949, 1213, 1256, 1362
BstMAI GTCTC 2 cut(s) 134, 685
BstMBI GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
BstMWI GCNNNNNNNGC 2 cut(s) 72, 449
BstPI GGTNACC 1 cut(s) 1259
BstSCI CCNGG 2 cut(s) 1164, 1362
BstSFI CTRYAG 3 cut(s) 273, 852, 1206
BstSLI GKGCMC 2 cut(s) 1312, 1369
BstUI CGCG 2 cut(s) 94, 1304
BstV1I GCAGC 3 cut(s) 97, 1037, 1156
BstV2I GAAGAC 2 cut(s) 659, 1313
BstX2I RGATCY 3 cut(s) 224, 333, 1210
BstYI RGATCY 3 cut(s) 224, 333, 1210
BsuI GTATCC 1 cut(s) 1056
BsuRI GGCC 2 cut(s) 132, 850
BtsCI GGATG 3 cut(s) 161, 201, 1351
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
BtuMI TCGCGA 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 375
CaiI CAGNNNCTG 2 cut(s) 524, 805
CciI TCATGA 1 cut(s) 733
CfoI GCGC 2 cut(s) 1271, 1304
Cfr13I GGNCC 2 cut(s) 848, 1139
CseI GACGC 1 cut(s) 847
CspCI CAANNNNNGTGG 2 cut(s) 826, 861
CviAII CATG 6 cut(s) 474, 608, 677, 734, 898, 1067
DdeI CTNAG 1 cut(s) 136
DpnI GATC 8 cut(s) 226, 335, 509, 929, 948, 1212, 1255, 1361
DpnII GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
DraIII CACNNNGTG 1 cut(s) 1243
EciI GGCGGA 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 548
Eco24I GRGCYC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 886
Eco47I GGWCC 1 cut(s) 1139
Eco57I CTGAAG 1 cut(s) 1134
Eco72I CACGTG 1 cut(s) 1313
Eco88I CYCGRG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 1259
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 1259
EcoRV GATATC 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 6 cut(s) 477, 611, 680, 737, 901, 1070
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 2 cut(s) 599, 1103
FatI CATG 6 cut(s) 473, 607, 676, 733, 897, 1066
FauNDI CATATG 1 cut(s) 783
FbaI TGATCA 1 cut(s) 946
Fnu4HI GCNGC 3 cut(s) 111, 1026, 1170
FokI GGATG 3 cut(s) 148, 188, 1358
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 3 cut(s) 111, 1026, 1170
FspBI CTAG 4 cut(s) 228, 374, 435, 975
GlaI GCGC 2 cut(s) 1270, 1303
GluI GCNGC 3 cut(s) 111, 1026, 1170
HaeIII GGCC 2 cut(s) 132, 850
HapII CCGG 2 cut(s) 1165, 1363
HgaI GACGC 1 cut(s) 847
HhaI GCGC 2 cut(s) 1271, 1304
Hin1I GRCGYC 1 cut(s) 858
Hin1II CATG 6 cut(s) 477, 611, 680, 737, 901, 1070
Hin6I GCGC 2 cut(s) 1269, 1302
HinP1I GCGC 2 cut(s) 1269, 1302
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 4 cut(s) 413, 802, 864, 1296
HpaII CCGG 2 cut(s) 1165, 1363
HphI GGTGA 1 cut(s) 1253
Hpy166II GTNNAC 5 cut(s) 9, 88, 238, 625, 1310
Hpy188I TCNGA 8 cut(s) 139, 412, 771, 807, 863, 934, 1153, 1253
Hpy188III TCNNGA 8 cut(s) 93, 212, 417, 583, 734, 799, 1044, 1226
Hpy8I GTNNAC 5 cut(s) 9, 88, 238, 625, 1310
Hpy99I CGWCG 1 cut(s) 863
HpyAV CCTTC 6 cut(s) 11, 122, 156, 1118, 1158, 1289
HpyCH4III ACNGT 4 cut(s) 28, 520, 1339, 1381
HpyCH4IV ACGT 4 cut(s) 687, 1188, 1220, 1312
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 449
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 4 cut(s) 687, 1188, 1220, 1312
Hsp92I GRCGYC 1 cut(s) 858
Hsp92II CATG 6 cut(s) 477, 611, 680, 737, 901, 1070
HspAI GCGC 2 cut(s) 1269, 1302
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
LmnI GCTCC 3 cut(s) 157, 486, 1022
Lsp1109I GCAGC 3 cut(s) 97, 1037, 1156
LweI GCATC 3 cut(s) 334, 416, 751
MaeI CTAG 4 cut(s) 228, 374, 435, 975
MaeII ACGT 4 cut(s) 687, 1188, 1220, 1312
MaeIII GTNAC 3 cut(s) 22, 176, 1259
MalI GATC 8 cut(s) 226, 335, 509, 929, 948, 1212, 1255, 1361
MbiI CCGCTC 1 cut(s) 152
MboI GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
MboII GAAGA 7 cut(s) 374, 664, 695, 822, 1153, 1313, 1381
MfeI CAATTG 1 cut(s) 1011
MflI RGATCY 3 cut(s) 224, 333, 1210
MhlI GDGCHC 4 cut(s) 483, 733, 1312, 1369
MluCI AATT 6 cut(s) 313, 423, 554, 596, 1011, 1393
MlyI GAGTC 2 cut(s) 407, 1305
MmeI TCCRAC 2 cut(s) 417, 841
MnlI CCTC 5 cut(s) 215, 912, 976, 978, 1336
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 4 cut(s) 281, 344, 599, 632
MslI CAYNNNNRTG 2 cut(s) 534, 1071
MspCI CTTAAG 1 cut(s) 343
MspI CCGG 2 cut(s) 1165, 1363
MspR9I CCNGG 2 cut(s) 1166, 1364
MunI CAATTG 1 cut(s) 1011
Mva1269I GAATGC 2 cut(s) 311, 445
MvnI CGCG 2 cut(s) 94, 1304
MwoI GCNNNNNNNGC 2 cut(s) 72, 449
NciI CCSGG 2 cut(s) 1166, 1364
NdeI CATATG 1 cut(s) 783
NdeII GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
NheI GCTAGC 1 cut(s) 373
NlaIII CATG 6 cut(s) 477, 611, 680, 737, 901, 1070
NlaIV GGNNCC 2 cut(s) 335, 482
NmuCI GTSAC 3 cut(s) 22, 176, 1259
NruI TCGCGA 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 409
PagI TCATGA 1 cut(s) 733
PctI GAATGC 2 cut(s) 311, 445
PfeI GAWTC 2 cut(s) 802, 864
PflFI GACNNNGTC 1 cut(s) 1379
PkrI GCNGC 3 cut(s) 112, 1027, 1171
PleI GAGTC 2 cut(s) 407, 1304
PmaCI CACGTG 1 cut(s) 1313
PmlI CACGTG 1 cut(s) 1313
PpsI GAGTC 2 cut(s) 407, 1304
Ppu21I YACGTR 1 cut(s) 1313
Psp1406I AACGTT 2 cut(s) 1188, 1220
PspCI CACGTG 1 cut(s) 1313
PspEI GGTNACC 1 cut(s) 1259
PspN4I GGNNCC 2 cut(s) 335, 482
PspPI GGNCC 2 cut(s) 848, 1139
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 524, 805
PsuI RGATCY 3 cut(s) 224, 333, 1210
PsyI GACNNNGTC 1 cut(s) 1379
RruI TCGCGA 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 534, 1071
SaqAI TTAA 4 cut(s) 281, 344, 599, 632
SatI GCNGC 3 cut(s) 111, 1026, 1170
Sau3AI GATC 8 cut(s) 224, 333, 507, 927, 946, 1210, 1253, 1359
Sau96I GGNCC 2 cut(s) 848, 1139
SchI GAGTC 2 cut(s) 407, 1305
ScrFI CCNGG 2 cut(s) 1166, 1364
SduI GDGCHC 4 cut(s) 483, 733, 1312, 1369
SfaNI GCATC 3 cut(s) 334, 416, 751
SfcI CTRYAG 3 cut(s) 273, 852, 1206
SinI GGWCC 1 cut(s) 1139
SmiMI CAYNNNNRTG 2 cut(s) 534, 1071
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 6 cut(s) 313, 423, 554, 596, 1011, 1393
SsiI CCGC 2 cut(s) 150, 155
SspI AATATT 1 cut(s) 1126
SspMI CTAG 4 cut(s) 228, 374, 435, 975
StyD4I CCNGG 2 cut(s) 1164, 1362
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 4 cut(s) 28, 520, 1339, 1381
TaiI ACGT 4 cut(s) 690, 1191, 1223, 1315
TaqI TCGA 1 cut(s) 1350
TaqII GACCGA 1 cut(s) 164
TasI AATT 6 cut(s) 313, 423, 554, 596, 1011, 1393
TfiI GAWTC 2 cut(s) 802, 864
Tru1I TTAA 4 cut(s) 281, 344, 599, 632
Tru9I TTAA 4 cut(s) 281, 344, 599, 632
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 3 cut(s) 22, 176, 1259
TseI GCWGC 3 cut(s) 110, 1025, 1169
Tsp45I GTSAC 3 cut(s) 22, 176, 1259
TspDTI ATGAA 5 cut(s) 36, 318, 624, 662, 1271
TspGWI ACGGA 2 cut(s) 94, 1254
TspRI CASTG 1 cut(s) 282
Tth111I GACNNNGTC 1 cut(s) 1379
Vha464I CTTAAG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 1308
VpaK11BI GGWCC 1 cut(s) 1139
XagI CCTNNNNNAGG 1 cut(s) 209
XspI CTAG 4 cut(s) 228, 374, 435, 975
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.